mRNA_P-littoralis_Contig149.127.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig149.127.1
Unique NamemRNA_P-littoralis_Contig149.127.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig149.127.1 vs. uniprot
Match: A0A6H5JW31_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW31_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.470e-10
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   37 RTDFLVRMTSVLLVEDLSFNLFSLHWGQRNGRIVLDEQGTHLFDGQLTFPYNETG 201
              DF V+++ V +V  ++FNLFSLH  QR  RI LD+ G HLF+GQL+F Y++ G
Sbjct:   42 EADFCVQISDVYVVPGITFNLFSLHHTQRRQRITLDDNGVHLFNGQLSFAYSDVG 96
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig149.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JW31_9PHAE1.470e-1050.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig149contigP-littoralis_Contig149:473776..473979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size204
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size177
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.4714518-UTR-P-littoralis_Contig149:473775..4738021680789706.4714518-UTR-P-littoralis_Contig149:473775..473802Pylaiella littoralis U1_48UTRP-littoralis_Contig149 473776..473802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.4848723-CDS-P-littoralis_Contig149:473802..4739791680789706.4848723-CDS-P-littoralis_Contig149:473802..473979Pylaiella littoralis U1_48CDSP-littoralis_Contig149 473803..473979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig149.127.1prot_P-littoralis_Contig149.127.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig149 473803..473979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig149.127.1

>prot_P-littoralis_Contig149.127.1 ID=prot_P-littoralis_Contig149.127.1|Name=mRNA_P-littoralis_Contig149.127.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
MHARTDFLVRMTSVLLVEDLSFNLFSLHWGQRNGRIVLDEQGTHLFDGQL
TFPYNETGS
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mRNA from alignment at P-littoralis_Contig149:473776..473979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig149.127.1 ID=mRNA_P-littoralis_Contig149.127.1|Name=mRNA_P-littoralis_Contig149.127.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig149:473776..473979+ (Pylaiella littoralis U1_48)
GTTGCCTGCGGTGATTTGGATTTGATCATGCATGCACGCACCGATTTTTT
GGTACGGATGACAAGCGTCTTGCTTGTGGAGGATCTCTCCTTCAATCTTT
TTTCTTTGCACTGGGGACAAAGGAACGGTAGGATTGTGCTAGATGAGCAA
GGGACACATTTATTCGACGGTCAACTCACGTTTCCGTACAATGAGACGGG
ATCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig149:473776..473979+

>mRNA_P-littoralis_Contig149.127.1 ID=mRNA_P-littoralis_Contig149.127.1|Name=mRNA_P-littoralis_Contig149.127.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig149:473776..473979+ (Pylaiella littoralis U1_48)
ATGCATGCACGCACCGATTTTTTGGTACGGATGACAAGCGTCTTGCTTGT
GGAGGATCTCTCCTTCAATCTTTTTTCTTTGCACTGGGGACAAAGGAACG
GTAGGATTGTGCTAGATGAGCAAGGGACACATTTATTCGACGGTCAACTC
ACGTTTCCGTACAATGAGACGGGATCT
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