mRNA_P-littoralis_Contig149.115.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig149.115.1
Unique NamemRNA_P-littoralis_Contig149.115.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig149.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig149contigP-littoralis_Contig149:384848..388714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1406
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005090.1
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.3735437-UTR-P-littoralis_Contig149:384847..3849231680789706.3735437-UTR-P-littoralis_Contig149:384847..384923Pylaiella littoralis U1_48UTRP-littoralis_Contig149 384848..384923 +
1680789706.4337738-UTR-P-littoralis_Contig149:387675..3887141680789706.4337738-UTR-P-littoralis_Contig149:387675..388714Pylaiella littoralis U1_48UTRP-littoralis_Contig149 387676..388714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.3900094-CDS-P-littoralis_Contig149:384923..3849921680789706.3900094-CDS-P-littoralis_Contig149:384923..384992Pylaiella littoralis U1_48CDSP-littoralis_Contig149 384924..384992 +
1680789706.4018464-CDS-P-littoralis_Contig149:385241..3852981680789706.4018464-CDS-P-littoralis_Contig149:385241..385298Pylaiella littoralis U1_48CDSP-littoralis_Contig149 385242..385298 +
1680789706.4128752-CDS-P-littoralis_Contig149:387510..3876751680789706.4128752-CDS-P-littoralis_Contig149:387510..387675Pylaiella littoralis U1_48CDSP-littoralis_Contig149 387511..387675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig149.115.1prot_P-littoralis_Contig149.115.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig149 384924..387675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig149.115.1

>prot_P-littoralis_Contig149.115.1 ID=prot_P-littoralis_Contig149.115.1|Name=mRNA_P-littoralis_Contig149.115.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
METAKNAVNSVGEAAGNMAQSAQSAVGLGGKQTGDDVPVPEVDTNKAKNA
VAGHGEILGKKGGADAKDAAADGDVKGAAEGVADAAKGVAGSVGTK*
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mRNA from alignment at P-littoralis_Contig149:384848..388714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig149.115.1 ID=mRNA_P-littoralis_Contig149.115.1|Name=mRNA_P-littoralis_Contig149.115.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3867bp|location=Sequence derived from alignment at P-littoralis_Contig149:384848..388714+ (Pylaiella littoralis U1_48)
CACAAACGTCCACCACACTCACCACATCCTACACAACACCAATTATCCCT
CTTGTTTCCACAAAACTGAAATCATCATGGAAACCGCCAAGAACGCAGTG
AACAGCGTGGGAGAGGCGGCAGGAAACATGGCGCAATCGGCGCAGGTGTG
TCTTCTTGTTGTGATGAGCACCTTCAACTGATTTATTTCATGGTTGGGTG
TAACATGTCTTCTCCATCCGAGTGAGTGTGATACACATACATGTCTCCGA
GCATGTCTTTCGAAAAATCCAAAACAGGCTGTTCGTGCTGTGTTGTCTTG
TGTTGTGCTGTGATGATGTGATGAGGCTTACGCTTATTACACGTAATACC
CGGTCCTCGCTCCCTTCCCGAACCCTGATGCGTGCGTGCTACAGTCAGCG
GTCGGCCTTGGCGGGAAGCAGACCGGAGACGACGTCCCTGTACCCGAAGT
GGTGAGTTTTGCTTGTCGCAAGTACACGCCAGAGAGAGGGCGAACAAATC
GGTCAGCTTTACCAGCAGTCGTGACTTTCATGCGTGGGGTGTCGGGTCAT
CTCCAGTCGACAAGACTACGCAGTAGGTCGTGCGGATTTCTCCCCGTCGG
TATTCCTCTTTGTTGTGGGACCCGTGGGCCCGATCGTGTGTACAACCCCC
TCCTCAGATGCAAACACTCCAGCTCGCCCCTGTAAATCTCTGCATGCTTT
CCCGCTTCAACCGCGATACGAAGTACTCCGAGTTTATAGCAGTACAGCAG
TGCCGGCCCGCTCATCATCACAATGAACACCACTTTTGGAGCGAGGCTCA
ACATCTTGGAGCTTATCCCCACCACTAAGCACCAATTGCTTACCACACAC
ACCCTTGTTCTTAGCCAATAATGTATGCATGGTACAAGACTACCATGGTG
GGATTTTCGCGAGGCGCCTGCCGTTGAGCCCAATTTCCCAAATTTCCTAC
TTTTTTTAGTCAGAATTTCTCACCTATTTGTTCACATCTGAGGTCCTTCT
CAGTGGGCCGGGGGTACTCTGTAAACCAAGAAGGCCTGACCTTTCCTGTA
CTAACTTCAACCTGTTTACTTCGAAGTGTTTGTTTTTTGTCAACATCTGT
CTGTCTCGCGCGCGCGATAACTGCTACCCGCTGCTTTCTGCACCAAAGCA
CTTCTTTACTAGCCACGAGTTCAACCTTTCTCTAGAAAAACATGTCAACT
TTGCGTTAACATCCTTCGCCGAGTAAACCTGCGATAAACGCAGGTTTGTT
TCTCGAAGTAACCCAATGGGCGAGCGCACTAAAGGCTGATATCAACTGGC
ACCCTCGGATGCCCACGGGGCACGAATTAATTACTCCAGTCTCCAAAAAA
GGAACAAATAAACGTTGTTGAAGACGGCGGGGGGTGCGTTTTGGAACGTT
TTATGATACACAAAAGAAAGTAGGATTCATTCGTACCGCACATACCTGCA
TATTGAAAAACGTCGCTTTGGAGTCCATGGCTCGGTGGATGATGCAAACC
TCAAACATACTCTGCATTGCTAAAATAATCGAGTTTTTCCTGCTGCTCTA
AATAATACTCCGGAGTATAACCGATTAATCCTACCCAAGCATTGAAAGTG
TGAAATATTGAAATAGTATTACTATCAAGTGGTATTGCCATAGTTTTCTT
TTCTAAATACTCCAATCTGGTGCAGTATTTTCCACATTATTTCCCCTCTC
TCGACAACGGTGAGGCTAGTCGTCCCGAAATATTTTTTTGAGGCGGGTCA
TACCCACGCCATCGACGTGGAGTAGAGGCTCGTGCTATACAATCATGCGG
CTCGAAGACTATCAGGCGCAGACTCTCATCATCTTTCGACGATATCCTCC
ACGATTTGTTTTCTCGATTATTCTACAGTGTGTACGAAAGCATTTACAAG
TGTAAAGCATACAGTATGCGACAGATAAATGTTAAGAAACCCAAGATAAG
AAATCCGGCCCGAGACTTTTGGAAATTTAGTCACGCAGTAATCGCTTTCC
ACTCACGGTTTCGATGAAAAAACAAGAACGACCGGTATTCGAAGACTCGC
GGCCGGCACAAATATTTTGACAAATATTTGGACATTTACCTCGTATGCCA
TTATTATCTGTTCCATCTTTTTTGCACGCGACTAACACGAAGTGCTTGCA
AATTGGATTATTTCGCGCCATAGAGTCGTTCTCCTATTTTCTGACGACAA
ATAAGACAAATCATATTCGGTCGTCATGTCACACAGTAGTGTCTGTTTTA
TGCTCAGAAAAAACGGTTTCATCGACGACCTTTTCGGTGCCGTACTACGA
ATACAACCAGTTTGTTTCATCCTAATTTGAGTTCATTCAGGAGGGAATCT
CCTTGTTTTTTTGTTGTGTTGTGACTTCCTCGTGAATAGCTGTTCTCTTA
TTTTGGTGCCCCGCCTCCCAGACCTGTCACATACAGTTGCTTCTTCCTGC
TGGAAATACGTCCGGCCGCAGCCGTCCCCACGAGCTTGTGTGCTGCTCAC
TGACATGATATGTTGGCATCGAGACTTGTTTCTCACACGCGTGCCTCTCC
GTATCGGGAAGTCTTCCTTTTGCAAAAAACAAGAATTCCTGCTGTGGATG
CTCCGAGCAAAACGTTGTATATAACCGGTTGTTTCTACTCCTCAACATGT
CAATACTTTGCAGGACACGAACAAGGCGAAGAATGCCGTGGCTGGACACG
GCGAGATCCTTGGTAAGAAGGGAGGAGCCGATGCCAAGGATGCGGCCGCC
GACGGCGACGTCAAGGGAGCCGCCGAGGGCGTTGCTGATGCCGCAAAGGG
CGTCGCGGGCAGTGTCGGCACCAAGTAACGGGAGCTTCAACTAGTCAGGC
TTTGGGGGTGGTGTTTATTTCCGCTCCCGCCCGATAGCTGCCTAGACTTG
GTGCAGTTACGAGAGACCTATTCTTCCAGAGCTATAGACACGGCGGTTGG
TGTCGATGTCGTGACTGACGATTACAAAGTAAACTGAATTCGAGAGTTTT
TTTGGGCTATTTTTTTGTTGATTTTTCTGTACGATGAAAGGCTGTTGAGA
GAGTTGAAATAATGGAGGTGGCTTTGCGGTAAAGAATGCAAGATTTTGAT
CGGTTGAGTCTCCTACACATAATGAATGGTCTTCGCGTCGTTGCAGAATA
CAATCACTTGTACAAAAACGCAGAAATTGGGGTAAATATGGCCATCGACT
TTCCTTCGCGCCGTCGGTAAGCGCTGGAGACCTGCTGGTACATGTTAGAC
TTTTTCTTTATTAGAGTTTATTTGATGTCTCGTCATGTGCTGCGTGTGAC
TTTGAGCTGAGCAAATAATAAGACTTGTTTACTGGTGCACAGGTATGGTG
CTAATGGTTTCGGCGGAGGAGGGTCGAGAAAGCTCGACTTGCGCGCAGCT
GTGGTAGCGTTATACGAAGTAAGATAAAACGTGTGAGGAAAACTCCGACC
AGACCCATAATTTTTCAAGCCGTGGACGCTGCTGCTTCATTCATTCGCTG
TGAATGGCGCTATCTGCTCGCGTTTTGTTGGCAACAAGGTTATGGTTTTG
AACGTGCGTGCTGGCGTAGCGACGTTGTTTCCCCTCGCGCGCGAGCGATA
TGACACGCACATACCTGCTGTCGGTGATTGTTGCCTCCGGGCTGCCGAAC
AGCATCTGCCGATTTTTCGCATGCAAATCTTTTTTTCAGTCGTCCCAATT
TTACCTGAAAATTTTGGGTGCTGACTGTAGAGTCCCAAGTAAGCGACGCG
CGCGCACTCACTCGTGGTTCTTCGCACACACAAGAACAAAAGGCGAGACG
CCGAGAGTCTGACCTTTGGCTGCCAGTCCGAAGATGAAGAACTTTCTAAC
GCCGTTCCGAACATGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig149:384848..388714+

>mRNA_P-littoralis_Contig149.115.1 ID=mRNA_P-littoralis_Contig149.115.1|Name=mRNA_P-littoralis_Contig149.115.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig149:384848..388714+ (Pylaiella littoralis U1_48)
ATGGAAACCGCCAAGAACGCAGTGAACAGCGTGGGAGAGGCGGCAGGAAA
CATGGCGCAATCGGCGCAGTCAGCGGTCGGCCTTGGCGGGAAGCAGACCG
GAGACGACGTCCCTGTACCCGAAGTGGACACGAACAAGGCGAAGAATGCC
GTGGCTGGACACGGCGAGATCCTTGGTAAGAAGGGAGGAGCCGATGCCAA
GGATGCGGCCGCCGACGGCGACGTCAAGGGAGCCGCCGAGGGCGTTGCTG
ATGCCGCAAAGGGCGTCGCGGGCAGTGTCGGCACCAAGTAA
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