mRNA_P-littoralis_Contig149.112.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig149.112.1
Unique NamemRNA_P-littoralis_Contig149.112.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig149.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig149contigP-littoralis_Contig149:372634..372975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LFA3
PFAMsARID,JmjC,JmjN,zf-C5HC2
Model size343
Max annot lvl2759|Eukaryota
KEGG koko:K11446
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.36e-05
EggNOG OGsCOG0055@1|root,KOG1246@2759|Eukaryota
Descriptionhistone lysine demethylation
Cds size159
COG categoryC
BRITEko00000,ko01000,ko01009,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.3182225-UTR-P-littoralis_Contig149:372633..3728161680789706.3182225-UTR-P-littoralis_Contig149:372633..372816Pylaiella littoralis U1_48UTRP-littoralis_Contig149 372634..372816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.3316092-CDS-P-littoralis_Contig149:372816..3729751680789706.3316092-CDS-P-littoralis_Contig149:372816..372975Pylaiella littoralis U1_48CDSP-littoralis_Contig149 372817..372975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig149.112.1prot_P-littoralis_Contig149.112.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig149 372817..372975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig149.112.1

>prot_P-littoralis_Contig149.112.1 ID=prot_P-littoralis_Contig149.112.1|Name=mRNA_P-littoralis_Contig149.112.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
LPANPVDCRIREAPTFWPTEEDFRDPLACVFLGLIVVIACHSGGGGWLWY
CC*
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mRNA from alignment at P-littoralis_Contig149:372634..372975-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig149.112.1 ID=mRNA_P-littoralis_Contig149.112.1|Name=mRNA_P-littoralis_Contig149.112.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig149:372634..372975- (Pylaiella littoralis U1_48)
CTGCCTGCGAACCCGGTAGATTGCCGCATTCGCGAGGCACCTACCTTTTG
GCCGACCGAGGAAGACTTCAGGGACCCCCTCGCGTGCGTATTTCTGGGGC
TTATTGTTGTAATTGCTTGTCATTCTGGAGGTGGTGGCTGGTTGTGGTAT
TGCTGCTGATGATGGATCTGATCAAAACATGCGTATACGCGCGGCATTGC
CGTGGTTGTAGCGTTGCCGTTACCCGGAGCTTCCTTGCCATGTAGAGGAT
ATGTACTTGGGCGCCGTGGTAAATGTGGAAGCAGAGAGACGCGAACTCTA
ATTTCAAGCATTTCGTGTCTGTGACTTGCCCCTTCTTCGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig149:372634..372975-

>mRNA_P-littoralis_Contig149.112.1 ID=mRNA_P-littoralis_Contig149.112.1|Name=mRNA_P-littoralis_Contig149.112.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig149:372634..372975- (Pylaiella littoralis U1_48)
CTGCCTGCGAACCCGGTAGATTGCCGCATTCGCGAGGCACCTACCTTTTG
GCCGACCGAGGAAGACTTCAGGGACCCCCTCGCGTGCGTATTTCTGGGGC
TTATTGTTGTAATTGCTTGTCATTCTGGAGGTGGTGGCTGGTTGTGGTAT
TGCTGCTGA
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