mRNA_P-littoralis_Contig149.110.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig149.110.1
Unique NamemRNA_P-littoralis_Contig149.110.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig149.110.1 vs. uniprot
Match: D8LFA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFA3_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.730e-61
Identity = 105/171 (61.40%), Postives = 128/171 (74.85%), Query Frame = 1
Query:    1 YVESIRGIAEKAGIAKIVPRDGWKPGKTSFGPHNEKVTPAKRQEVRNLINSDKLYGDGEKYTIPEYRVMADRAAKEWRDRDPPVQMPRNAPRHEPMEPKKPNTEVRPGTSKSGRQGETEKGGSLRSLEREYWNIVDGGAEEMEVEYANDLNISEFLSGFPLPPKDFVDGSS 513
            Y+ESIR  AE  GIAKIVP  GW P  T   PH+ K+ P K+Q + +L+NSD++Y DG  YT+ +Y+VMADR A++WR RDPP Q PR AP +EPM P   N EVRPG SK  R+ + E+ G LR LEREYWN+VDGG EE+EVEYANDLNIS F SGFP+PPK+F+DGSS
Sbjct:  387 YIESIRPTAESFGIAKIVPPVGWDPPPTPLRPHSRKLVPTKKQALHSLMNSDEVYDDGADYTVVDYKVMADRVAEKWRARDPPAQKPRAAPLYEPMGP---NVEVRPGASKEEREAKMEENGKLRLLEREYWNVVDGGVEELEVEYANDLNISTFWSGFPMPPKNFMDGSS 554          
BLAST of mRNA_P-littoralis_Contig149.110.1 vs. uniprot
Match: A0A7S2XRB0_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRB0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.680e-16
Identity = 61/165 (36.97%), Postives = 85/165 (51.52%), Query Frame = 1
Query:    1 YVESIRGIAEKAGIAKIVPRDGWKPGKTSFGPHNEKVTPAKRQEVRNLINSDKLYGDGEKYTIPEYRVMADRAAKEWRDR---DPPVQMPRNAPRHEPMEPKKPNTE--VRPGTSKSGRQGETEKGGSLRSLEREYWNIVDGGAEEMEVEYANDLNISEFLSGFP 480
            Y+  IR IAEK GI KIVP  GW P      P + K    K Q++  L      +GDGE YT  +Y+ M+ + ++EW D+   +P V  P        + P + +T   V    SK  R   T K     +LER+YW+IV+     + VEY ND++ +EF SGFP
Sbjct:   74 YINKIRHIAEKYGICKIVPPKGWNPP-FCIDPTSTKKFETKEQQIHRL-QEGVSFGDGEDYTAADYQEMSVKRSQEWCDKYYSEPKVVQPEVTSHPNDVLPSESDTVTVVEETESKIDRNLMTPK-----NLERDYWDIVETPVHRVVVEYGNDVDTTEFGSGFP 231          
BLAST of mRNA_P-littoralis_Contig149.110.1 vs. uniprot
Match: A0A7S1YPV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YPV2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.410e-14
Identity = 61/174 (35.06%), Postives = 82/174 (47.13%), Query Frame = 1
Query:    1 YVESIRGIAEKAGIAKIVPRDGWKPGKTSFGPHNEKVTPAKRQEVRNLINSDKLYGDGEKYTIPEYRVMADRAAKEWRDRDPPVQMP-----RNAPRHEPME-------PKKPNTEVRPGTSKSGRQG-ETEKGGSLRSLEREYWNIVDGGAEEMEVEYANDLNISEFLSGFPL 483
            Y+  IR IAEK GI KIVP  GW P        + K    K Q +  L      +GDGE+YT  EY+ MA   A  WRD + P          N P  +P E       P       +P  S    Q  +  +  +  +LER+YW+IV+  +  + VEY ND++ +EF SGFP 
Sbjct:   75 YINKIRPIAEKYGICKIVPPAGWDPP-FCVNMDSPKKFQTKEQLIHRLQEGIS-FGDGEEYTAREYQKMASEQAMRWRDTNYPDHFATQADGENPPVIDPTESHLSSETPVLSEKVAKPDESADSFQHCDDRRQMTAENLERDYWDIVETHSVSLAVEYGNDVDTTEFGSGFPF 246          
BLAST of mRNA_P-littoralis_Contig149.110.1 vs. uniprot
Match: B8BTH4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTH4_THAPS)

HSP 1 Score: 73.9 bits (180), Expect = 3.200e-12
Identity = 61/207 (29.47%), Postives = 89/207 (43.00%), Query Frame = 1
Query:    1 YVESIRGIAEKAGIAKIVPRDGWKPGKTSFGPHNEKVTPAKRQEVRNLINSDKLYGDGEKYTIPEYRVMADRAAKEWRDRDPPVQMPRNAPRHEPMEPKKPNTEVRPG--TSKSGRQGETEKGGSLRS--------------------------------------------LEREYWNIVDGGAEEMEVEYANDLNISEFLSGFPL 483
            Y+E IR IAE+ GI KIVP +GW P         E+ +  K Q +  L      +GDG++YT+ EY+ MA   +KEWR+    V  P +  +  P  P     E+     T  +G       GG + +                                            LER+YW IV+G   E++V+Y ND++ S+F SGFP+
Sbjct:   73 YIEKIRCIAERYGICKIVPPEGWNPPFALNIDCPERFS-TKDQSIHRLQEGIS-FGDGDEYTVKEYQKMASEWSKEWRNSHYIV--PGDEGKKSPSPPPSAAAELDQNNYTGMNGNMPVPSSGGVVAAADATTTTADNAKINPMGNVSSNPNNTAPTTETEFKPKTIMTPECLERDYWEIVEGQCHEIDVDYGNDVDTSDFGSGFPI 275          
BLAST of mRNA_P-littoralis_Contig149.110.1 vs. uniprot
Match: B7G887_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G887_PHATC)

HSP 1 Score: 72.4 bits (176), Expect = 1.070e-11
Identity = 54/161 (33.54%), Postives = 78/161 (48.45%), Query Frame = 1
Query:    1 YVESIRGIAEKAGIAKIVPRDGWKPGKTSFGPHNEKVTPAKRQEVRNLINSDKLYGDGEKYTIPEYRVMADRAAKEWRDRDPPVQMPRNAPRHEPMEPKKPNTEVRPGTSKSGRQGETEKGGSLRSLEREYWNIVDGGAEEMEVEYANDLNISEFLSGFPL 483
            +VE IR +AE+ GI KIVP DGW P       +  K    KRQ +  L      + DG  YT  EY+ MA    +EW+          N P H+ +     + +V    ++  +    E      +LER+YW+IV+     + V+Y ND++  EF SGFPL
Sbjct:   70 FVEKIRPVAERYGICKIVPPDGWNPP-CQVDRNTRKKFQTKRQLLHRLQEGIS-FDDGVDYTPKEYQRMASERTQEWKAL--------NYPDHDLLSR---HADVVQEDAQRAKLFRPE------NLERDYWDIVETHTRPVTVDYGNDVDTEEFGSGFPL 211          
BLAST of mRNA_P-littoralis_Contig149.110.1 vs. uniprot
Match: A0A7S0G863_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G863_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.420e-11
Identity = 56/172 (32.56%), Postives = 80/172 (46.51%), Query Frame = 1
Query:    1 YVESIRGIAEKAGIAKIVPRDGWKPGKTSFGPHNEKVTPAKRQEVRNLINSDKLYGDGEKYTIPEYRVMADRAAKEWRDR-------DPPVQMPRNA----PRHEPMEPKKPNTEVRPGTSKSGRQGETEKGGSLRSLEREYWNIVDGGAEEMEVEYANDLNISEFLSGFPL 483
            Y+ SIR +AEK GI KIVP  GW P        + K    K+Q +   I     + DGE YT  EY  MA   + +W++        DPP      A    PRH  +      ++++  T ++              LER+YW+IV+  +    VEY ND++  E+ SGFPL
Sbjct:   72 YINSIRPLAEKYGICKIVPPKGWDPP-FCVDMKSSKEFQTKKQMLHR-IQEGISFDDGEDYTPAEYEKMASEMSMKWKNAHYSEDIYDPPQTSQTKAVEKKPRHSAVA-----SDIKRMTPEN--------------LERDYWDIVETNSCSHSVEYGNDIDTIEYWSGFPL 222          
BLAST of mRNA_P-littoralis_Contig149.110.1 vs. uniprot
Match: A0A1E7FMP1_9STRA (JmjC-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMP1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.270e-6
Identity = 52/178 (29.21%), Postives = 76/178 (42.70%), Query Frame = 1
Query:    1 YVESIRGIAEKAGIAKIVPRDGWKPGKTSFGPHNEKVTPAK---RQEVRNLINSDKLYGDGEKYTIPEYRVMADRAAKEWRDRDPP-----VQMPRNAPRHEPMEPKKPNTEVRPGTSKSGRQG---------ETEKGGSLRSLEREYWNIVDGGAEEMEVEYANDLNISEFLSGFPL 483
            Y+  IR IA++ GI KIVP  GWK  K  F    E  TP K   + +  + I+    +GDGE+Y    Y+  A +  KE++++  P     VQ                                        E  +     +LE++YW++V+    E  VEY ND++  EF SGFPL
Sbjct:   77 YINKIRPIAQRYGICKIVPPQGWKE-KDFFAAKME--TPPKFSTKLQYLHRIHEGISFGDGEEYNPGSYQRYASKFTKEYKNKQYPDHDLLVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIDEEDHRRFIPENLEQDYWDVVENKTREFRVEYGNDVDTEEFGSGFPL 251          
BLAST of mRNA_P-littoralis_Contig149.110.1 vs. uniprot
Match: F0XYW6_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYW6_AURAN)

HSP 1 Score: 56.2 bits (134), Expect = 3.750e-6
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1
Query:  376 SLEREYWNIVDGGAEEMEVEYANDLNISEFLSGFPLPPKDFVD 504
            +LE +YW+ VD GAE +EVEY ND+++ EF SGFP P  D  D
Sbjct:   37 ALEEDYWDAVDRGAEAVEVEYGNDVDVHEFWSGFPKPDGDRAD 79          
BLAST of mRNA_P-littoralis_Contig149.110.1 vs. uniprot
Match: A0A3R7NBX6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NBX6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.670e-5
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1
Query:  379 LEREYWNIVDGGAEEMEVEYANDLNISEFLSGFPLPPKDFV 501
            +E+EYW IV+ G   +EVEYANDL+I+E  SGFP   K F 
Sbjct:  131 IEQEYWRIVESGGPNVEVEYANDLDITEVGSGFPRSTKRFA 171          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig149.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LFA3_ECTSI1.730e-6161.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XRB0_9STRA5.680e-1636.97Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A7S1YPV2_9STRA3.410e-1435.06Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
B8BTH4_THAPS3.200e-1229.47Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
B7G887_PHATC1.070e-1133.54Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S0G863_9STRA1.420e-1132.56Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7FMP1_9STRA2.270e-629.21JmjC-domain-containing protein n=1 Tax=Fragilariop... [more]
F0XYW6_AURAN3.750e-655.81JmjC domain-containing protein n=1 Tax=Aureococcus... [more]
A0A3R7NBX6_9STRA7.670e-556.10Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig149contigP-littoralis_Contig149:370857..372599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LFA3
PFAMsARID,JmjC,JmjN,zf-C5HC2
Model size515
Max annot lvl2759|Eukaryota
KEGG koko:K11446
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.83e-62
EggNOG OGsCOG0055@1|root,KOG1246@2759|Eukaryota
Descriptionhistone lysine demethylation
Cds size513
COG categoryC
BRITEko00000,ko01000,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789706.2384324-CDS-P-littoralis_Contig149:370856..3709401680789706.2384324-CDS-P-littoralis_Contig149:370856..370940Pylaiella littoralis U1_48CDSP-littoralis_Contig149 370857..370940 -
1680789706.2593439-CDS-P-littoralis_Contig149:371378..3715191680789706.2593439-CDS-P-littoralis_Contig149:371378..371519Pylaiella littoralis U1_48CDSP-littoralis_Contig149 371379..371519 -
1680789706.2706637-CDS-P-littoralis_Contig149:371921..3720591680789706.2706637-CDS-P-littoralis_Contig149:371921..372059Pylaiella littoralis U1_48CDSP-littoralis_Contig149 371922..372059 -
1680789706.2802014-CDS-P-littoralis_Contig149:372449..3725991680789706.2802014-CDS-P-littoralis_Contig149:372449..372599Pylaiella littoralis U1_48CDSP-littoralis_Contig149 372450..372599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig149.110.1prot_P-littoralis_Contig149.110.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig149 370857..372599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig149.110.1

>prot_P-littoralis_Contig149.110.1 ID=prot_P-littoralis_Contig149.110.1|Name=mRNA_P-littoralis_Contig149.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=171bp
YVESIRGIAEKAGIAKIVPRDGWKPGKTSFGPHNEKVTPAKRQEVRNLIN
SDKLYGDGEKYTIPEYRVMADRAAKEWRDRDPPVQMPRNAPRHEPMEPKK
PNTEVRPGTSKSGRQGETEKGGSLRSLEREYWNIVDGGAEEMEVEYANDL
NISEFLSGFPLPPKDFVDGSS
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mRNA from alignment at P-littoralis_Contig149:370857..372599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig149.110.1 ID=mRNA_P-littoralis_Contig149.110.1|Name=mRNA_P-littoralis_Contig149.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1743bp|location=Sequence derived from alignment at P-littoralis_Contig149:370857..372599- (Pylaiella littoralis U1_48)
TACGTCGAGTCGATTCGAGGAATCGCCGAGAAAGCGGGCATAGCCAAGAT CGTACCGCGTGATGGTTGGAAACCGGGGAAAACCTCGTTCGGACCGCATA ACGAAAAGGTTACGCCAGCCAAAAGGCAGGAAGTCCGCAACCTTATCAAT GTGCGTGGAACTGCTGTCTCTGTGTGTGTCTACGTTTTAGCTTTCATTGT GTTCATTCAAGTCAGCATCTGTCATGGTTCTACTAATCGATTGACTGGTG TGAAAGAGTTTGATAAATTTGCGTACGACGTTTTGGTCAGTTTGTCTCTC TGGTTCGCTGTTGTCGTTGCCGTTGCTGCTATTGTTTGTGTGACGGATGG GCGATGACCGAAACCATCTGGGTCTACCTTGGCATTCACGACCGCTTTGT CTCACAGGCCCGTGTCAATTTAGTATCTACATCCAACGCTTGCGGGCGTT GATGCTGTTGTTCAAAACGTCAAAATGATCCTTGAATAGTCTTTTTTGTT TTCAACTCTTTCGTGTATATGTCATGACACACAACAACAGTCGGATAAGC TGTACGGTGACGGTGAGAAGTACACCATCCCGGAGTACAGGGTCATGGCC GACAGGGCGGCGAAGGAGTGGCGCGATCGAGACCCCCCCGTGCAGATGCC GCGCAACGCCCCTCGACACGAGCCAATGGTGGGTCCCATGCCGATGTGCC ATGCCCTACAGTACCTGGTATCTTGCAAAGAATTTAATGATGTGGTGGAA TCTGGTGGGACGTGATGTTGTGATTCTGTACATATAATGATGCGAAATAA ATGTGACGTGATGCGATGCGATGCGATCTGATGTACACGGTTGGGATGAG CGGTTGCATTTGCTCTCTTTTCGCGGCGGGGATTGCCGCCTACGCGACCA CGCACAAGCGTGGCGTGATTTCTCTGTTTTCAGTCCGTCTCTGAAAGATG CGTGGTTGTCATACACCTCTCGACGACTTTCAGGGTAAAAGCAAAGAAAA CTGACTATACGTCACCACATTTCTACCCCCCCCCCCCCCACATTGCTGCA ATGCGCTTGAAAATTGCACGGCATACGTAGGAGCCGAAGAAGCCAAACAC GGAAGTCCGACCGGGCACGAGCAAGTCTGGACGACAAGGAGAGACGGAGA AGGGTGGCAGCTTGCGGTCACTCGAGCGAGAGTACTGGAACATCGTGGAC GGAGGTGCTGAGGAGATGGAAGTGAGTTGCAACAAAATATCCGGACTGCG GGAATTGGGGGGAAGAGGGCGGGGGGGGGCTAATGATGTACTTCTACAGG GGAGCGGGTGGGAGTTAAATGTGTTTTGAGTTGAGGAATAAAACCGTTCC CGTTCTTGATACGACTCGTCACTTCCAGCGGGGGGAGGCGGGAGGGTTAA ACGGGCCCGTTTTTATGCTTTTCTATGCGCCGGCAGGAACGAGGTCAACT TTGTTCGACTCTTGCGTCGACGGCTGTTTCGTTGGCACGGTACAACAGTC AATACGCGCTTTAAGCACAGATACACATATCACGCCGAATCGTCATGCCC AATACTACAACTAGTGCATAACGCCAGCACACACAACCAGCTCAAATCAC GCACAACACAACAGCAACAAACAAGTAAGCCAACAGCAATCCACCCAAAC AAACAACAGGTGGAGTACGCGAACGACCTCAACATCTCCGAGTTTTTGAG CGGCTTCCCCTTGCCGCCGAAAGACTTCGTGGACGGCTCCTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig149:370857..372599-

>mRNA_P-littoralis_Contig149.110.1 ID=mRNA_P-littoralis_Contig149.110.1|Name=mRNA_P-littoralis_Contig149.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=513bp|location=Sequence derived from alignment at P-littoralis_Contig149:370857..372599- (Pylaiella littoralis U1_48)
TACGTCGAGTCGATTCGAGGAATCGCCGAGAAAGCGGGCATAGCCAAGAT
CGTACCGCGTGATGGTTGGAAACCGGGGAAAACCTCGTTCGGACCGCATA
ACGAAAAGGTTACGCCAGCCAAAAGGCAGGAAGTCCGCAACCTTATCAAT
TCGGATAAGCTGTACGGTGACGGTGAGAAGTACACCATCCCGGAGTACAG
GGTCATGGCCGACAGGGCGGCGAAGGAGTGGCGCGATCGAGACCCCCCCG
TGCAGATGCCGCGCAACGCCCCTCGACACGAGCCAATGGAGCCGAAGAAG
CCAAACACGGAAGTCCGACCGGGCACGAGCAAGTCTGGACGACAAGGAGA
GACGGAGAAGGGTGGCAGCTTGCGGTCACTCGAGCGAGAGTACTGGAACA
TCGTGGACGGAGGTGCTGAGGAGATGGAAGTGGAGTACGCGAACGACCTC
AACATCTCCGAGTTTTTGAGCGGCTTCCCCTTGCCGCCGAAAGACTTCGT
GGACGGCTCCTCC
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