mRNA_P-littoralis_Contig149.98.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig149.98.2
Unique NamemRNA_P-littoralis_Contig149.98.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig149.98.2 vs. uniprot
Match: D7FWA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA3_ECTSI)

HSP 1 Score: 501 bits (1289), Expect = 4.990e-157
Identity = 450/944 (47.67%), Postives = 528/944 (55.93%), Query Frame = 1
Query:   64 PRGFVELRGAVMELVEEGAALGLTTVELFLQLGASASSEGIGSRELRKGLASLSVHLTETEIETVMAGAG-CTNGSS---HNNPASGRLL-TLERFLAMVQNPLGRQQTVLPITSAGITVAGAHSAGAGAGAIAPALDMQQPSPPVELGRGIPHSDSNRD---AIEEDDGCVTPDSLAPRMSLSELLVEVREVGGXXXXXXXXXXXXXXXXAAHVEAFGRVAVNVQAMLATAISKSGTEYTGGAGXXXXXXXXXXXXXXXXXXXXXXGNPSRRSRSDGGHKGSQAPTPSNPSSLSMATAAVE---TASKSRL--------EGEGKTSRDDEDKEEKQYGEEEEIAAPTPTSSRVSAPASRSGPVPPTGAIXXXXXXXXXXXXXXXXXXASRERLKAALEGLDLKERLRPTTTVGGNGDNXXXXXXXHTSDTALSVNRRARRGSARARLPAESSGRTAAAVXXXXXXXXXXXXXXXXXXATXXXXXXXXXXXXXPAGQAALYSHRLESVNIGGSAASTSSRSKRVSAIRPHTVAGIDDKGARVRRLSSNRGAGGAGSERRGR--LGEVVDLAAAEGGESVAYDGGADDAPEVIGRLRAKVAELELTGQLLRCELEGARADLTSKARRAEQEAQREKDRAKERERMLQAKMGARLRAAEAEAAAAQKRMVELKTTSAXXXXXXEKSSADYLRRRLREAEATLEAKAARRXXXXXXXXXXXXXXXXXXXXXXXHLTDRRRQAWRRENWGGGGDGTDGEGRDSGSDGGVDGGRGTSNRWARQRARRKIGVLGKLGSAXXDXNGGSDAGAAVVLGLREELGSCRKKLAVVTEEASRLRKE-AAVSGKRMERRRNRDYG-EGEEEEAIEGARKTGGRRGVVRPGKSCVVCGEPSRCVRERQRARERRLEVRMAESEDARIEVEAEAGRLQAFLDEMRGLGPPFGQPWRGG 2826
            PRGF E+R  ++ELVEEG+ LGLT  ELFLQL   A  EGIGSREL+KGLASLSVHLTETE+  VM+GAG C+ G      N     RL+ TLE F A+VQNPL ++Q  +P+T+ G              + A AL+  +     EL     H+ +N D   A E+ DGCVTPDSLAPRMSLSEL V     G                 AAHVEAFGRVA +VQA+LATA+S SGT    G  XXXXX      XXXXXXXXXXXG+ S+  R          PT  +P+S S   AA+E   T S++R+        E EGK                    + TPTSSRVS  ASRS P P TGAI                  ASRERL+AALEGLDLKERLRPTTTVGGN  N        TS  +L   RR+   SA ARLPAE +G  A        XXXXXX       ++              A  A   S RL S  +GG   S++   +R  A R  T  G+D++G+R  RLS +R +G AG E+R +  LGEVVDL AAEG     YDGG++ APEVIG LRAKVAELEL   LLRCEL+GAR+DL S+ RRAE+E++RE  RAKERER+LQ +MGARLRAAEAEAAA  KRM + K    XXXXXX         RRL+EAE  LEAKAARR                         T R  +  R     GG DGTD  G           G G+S+ W ++RARR+I   G  G  XX X             LR+EL SCRKKL V T E SRL+KE +A SG++   RR    G E                +   RPGK+C+VCGE     RERQ+ RERRL  RMAESEDARIEVEAEAGRLQAFLDEMRGLGPP  Q WRGG
Sbjct:  134 PRGFEEVRRVLIELVEEGSFLGLTAAELFLQLDDGAQHEGIGSRELKKGLASLSVHLTETEVAMVMSGAGSCSTGGGIDERNQSGKDRLIMTLEEFSALVQNPLKQRQRAIPVTATG--------------SAARALEANKSPQGAELSNARRHT-NNTDGAAAAEDGDGCVTPDSLAPRMSLSELQVLDDGKGSGGGSAYAGGPATSNSTAAHVEAFGRVAADVQAVLATAVSGSGT----GRSXXXXXGQDGCSXXXXXXXXXXXGSISKDRR----------PTVPSPNS-SAGPAAMEACATDSRNRVGVADRSPGEEEGKXXXXXXXXXXXXXXXXXXSTSQTPTSSRVSTAASRSAPFPRTGAITPPFGPARSPSEPLHPTRASRERLEAALEGLDLKERLRPTTTVGGN--NPDNGSDHPTS--SLGARRRSSHRSAGARLPAEGAGGEARQASSQRRXXXXXXSGRRPGTSSSVAKVAVGTA----ASPATFLSRRLASDVVGGGVGSSN---RRPVAGRRRTATGVDERGSRADRLSGSR-SGAAGPEQRQQQLLGEVVDLTAAEGARKPEYDGGSEGAPEVIGGLRAKVAELELAEHLLRCELDGARSDLVSERRRAEKESRREAARAKERERVLQTRMGARLRAAEAEAAATAKRMADFKXXXXXXXXXXXXXXXXXXXRRLKEAEVVLEAKAARRISSSKRQQQQRQRAYL--------ATGRPHRESR-----GGDDGTDSAGGSXXXXXXXXRGIGSSSGWGQRRARRRIVPPGDAGGGXXXXXXXXXXXXXXAAKLRDELASCRKKLDVATAEVSRLKKEVSAASGRKGGGRRGDCKGAEXXXXXXXXXXXXXXXXKKSARPGKACLVCGERGGSSRERQKQRERRLAARMAESEDARIEVEAEAGRLQAFLDEMRGLGPPIVQYWRGG 1022          
BLAST of mRNA_P-littoralis_Contig149.98.2 vs. uniprot
Match: A0A6H5L9S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9S9_9PHAE)

HSP 1 Score: 368 bits (945), Expect = 5.310e-108
Identity = 383/893 (42.89%), Postives = 467/893 (52.30%), Query Frame = 1
Query:   64 PRGFVELRGAVMELVEEGAALGLTTVELFLQLGASASSEGIGSRELRKGLASLSVHLTETEIETVMAGAG-CTNGSS---HNNPASGRLL-TLERFLAMVQNPLGRQQTVLPITSAGITVAGAHSAGAGAGAIAPALDMQQPSPPVELGRGIPHSDSNRDAIEEDDGCVTPDSLAPRMSLSEL--LVEVREVGGXXXXXXXXXXXXXXXXAAHVEAFGRVAVNVQAMLATAISKSGTEYTGGAGXXXXXXXXXXXXXXXXXXXXXXGNPSRRSRSDGGHKGSQAPTPSNPSSLSMATAAVETASKSRLEGEGKTSRDDEDKEEKQYGEEEEIA---------APTPTSSRVSAPASRSGPVPPTGAIXXXXXXXXXXXXXXXXXXASRERLKAALEGLDLKERLRPTTTVGGNGDNXXXXXXXHTSDTALSVNRRARRGSARARLPAESSGRTAAAVXXXXXXXXXXXXXXXXXXATXXXXXXXXXXXXXPAGQAALYSHRLESVNIGGSAASTSSRSKRVSAIRPHTVAGIDDKGARVRRLSSNRGAGGAGSERRGRLGEVVDLAAAEGGESVAYDGGADDAPEVIGRLRAKVAELELTGQLLRCELEGARADLTSKARRAEQEAQREKDRAKERERMLQAKMGARLRAAEAEAAAAQKRMVELKTTSAXXXXXXEKSSADYLRRRLREAEATLEAKAARRXXXXXXXXXXXXXXXXXXXXXXXHLTDRRRQAWRRENWGGGGDGTDGEGRDSGSDGGVDGGRGTSNRWARQRARRKIGVLGKLGSAXXDXNGGSDAGAAVVLGLREELGSCRKKLAVVTEEASRLRKE-AAVSGKRMERR-----RNRDYGEGEEEEAIEGARKTGGRRGVVRPGKSCVVCGEP--SRCVR 2670
            PRGF E+R  ++ELVEEG+ALGLT  ELFLQL   A  EGIGSREL+KGLASLSVHLTETE+E VM+GAG C+ G      N     RL+ TL+ F A+V NPL + Q  +P+T+ G                  A    Q + P    R   ++DS   A E+ DGCVTPDSLAPRMSLSEL  L + ++ GG                AAHVEAFGRVA +VQA+LATA+S S T  +G                             +R    G +   + P   +P+S S   AA+E  +       G   R+  ++E K+                 + TPTSSRVS  AS S P P  GA+                  ASRERL+AALEGLDLKERLRPTTTVGGN  N        TS  +L   RR+   SA ARLPAE +G  A   XXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXX           +    +G S       ++R  A R     G+D+KG+R  RLS++R +G AG E+R      VDL AAEG  +  YDGG++ APEVIG LRAKVAELEL   LLRCEL+GARADL S+ RRAE+E++RE  RAKERER+LQA+MGARLRAAEAEAAA  K+M + K                      R   A L   A RR                       H   R           GG +GT   G     DG    G  +S+ WA++RARR+I   G  G  XX X             LR+EL SCRKKL V T +  RL+KE +A SGK+   R     R  ++G G        A++ G  +   RPGK+C+VCGE   SRC R
Sbjct:  159 PRGFEEVRRVLIELVEEGSALGLTAAELFLQLDEGAQHEGIGSRELKKGLASLSVHLTETEVEMVMSGAGSCSTGGGIDERNQSGKDRLIMTLQEFSALVHNPLEQPQRAIPVTATGSAACAFE-----------ANKSPQGAEPSNERRHTTNTDSAA-AAEDGDGCVTPDSLAPRMSLSELHALDDGKDSGGGSAYAGGPATSNST--AAHVEAFGRVAADVQAVLATAVSGSVTGRSGSG--------------TVGQDGCSSSTDGKRGGQGGSNSKDRRPPVPSPNS-SAGPAAMEACAADSRNRVGVADRNPGEEEGKRXXXXXXXXXXXXXXXSPSQTPTSSRVSTNASHSSPFPRAGAVTPPFGPARSPSEPLHPTRASRERLEAALEGLDLKERLRPTTTVGGN--NADNGSDDPTS--SLGSRRRSSHRSAGARLPAEGTGGEARQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGGVGSS-------NRRPVAGRRRIATGVDEKGSRTDRLSTSR-SGAAGPEQR-----HVDLTAAEGARNPEYDGGSEGAPEVIGGLRAKVAELELAEHLLRCELDGARADLVSERRRAEEESRREAARAKERERVLQARMGARLRAAEAEAAATAKQMADFK----------------------RWQRACL---ATRRP----------------------HKESR-----------GGDNGTYSAGGSERGDGSAGPGISSSSGWAQRRARRRIVPPGDAGXXXXXXXXXXXXXXXXXAKLRDELASCRKKLDVATADVYRLKKEVSAASGKKGGSRCGDCHRAEEWGGG----GGHVAKEMGEGKKSARPGKACLVCGERGRSRCER 943          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig149.98.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWA3_ECTSI4.990e-15747.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L9S9_9PHAE5.310e-10842.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig149contigP-littoralis_Contig149:347707..352086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3116
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_003930.1
Cds size2841
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig149.98.2prot_P-littoralis_Contig149.98.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig149 347970..352074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789705.955964-UTR-P-littoralis_Contig149:347706..3479691680789705.955964-UTR-P-littoralis_Contig149:347706..347969Pylaiella littoralis U1_48UTRP-littoralis_Contig149 347707..347969 -
1680789706.0123298-UTR-P-littoralis_Contig149:352074..3520861680789706.0123298-UTR-P-littoralis_Contig149:352074..352086Pylaiella littoralis U1_48UTRP-littoralis_Contig149 352075..352086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789705.9653146-CDS-P-littoralis_Contig149:347969..3481561680789705.9653146-CDS-P-littoralis_Contig149:347969..348156Pylaiella littoralis U1_48CDSP-littoralis_Contig149 347970..348156 -
1680789705.9766893-CDS-P-littoralis_Contig149:348377..3490281680789705.9766893-CDS-P-littoralis_Contig149:348377..349028Pylaiella littoralis U1_48CDSP-littoralis_Contig149 348378..349028 -
1680789705.9917257-CDS-P-littoralis_Contig149:349442..3496361680789705.9917257-CDS-P-littoralis_Contig149:349442..349636Pylaiella littoralis U1_48CDSP-littoralis_Contig149 349443..349636 -
1680789706.0030565-CDS-P-littoralis_Contig149:350265..3520741680789706.0030565-CDS-P-littoralis_Contig149:350265..352074Pylaiella littoralis U1_48CDSP-littoralis_Contig149 350266..352074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig149.98.2

>prot_P-littoralis_Contig149.98.2 ID=prot_P-littoralis_Contig149.98.2|Name=mRNA_P-littoralis_Contig149.98.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=947bp
MKERKGSMPILTLAHDAPRGFVELRGAVMELVEEGAALGLTTVELFLQLG
ASASSEGIGSRELRKGLASLSVHLTETEIETVMAGAGCTNGSSHNNPASG
RLLTLERFLAMVQNPLGRQQTVLPITSAGITVAGAHSAGAGAGAIAPALD
MQQPSPPVELGRGIPHSDSNRDAIEEDDGCVTPDSLAPRMSLSELLVEVR
EVGGGGGGDDGDGPGTSSSAAAHVEAFGRVAVNVQAMLATAISKSGTEYT
GGAGDGGDGGDGSGGGRQGEQSSSVSGNPSRRSRSDGGHKGSQAPTPSNP
SSLSMATAAVETASKSRLEGEGKTSRDDEDKEEKQYGEEEEIAAPTPTSS
RVSAPASRSGPVPPTGAITPPFGPARSPSEPLHPTRASRERLKAALEGLD
LKERLRPTTTVGGNGDNDGDDDNDHTSDTALSVNRRARRGSARARLPAES
SGRTAAAVEASRRCASSSEGSHRRRSATAATAAPAAAAAATPAGQAALYS
HRLESVNIGGSAASTSSRSKRVSAIRPHTVAGIDDKGARVRRLSSNRGAG
GAGSERRGRLGEVVDLAAAEGGESVAYDGGADDAPEVIGRLRAKVAELEL
TGQLLRCELEGARADLTSKARRAEQEAQREKDRAKERERMLQAKMGARLR
AAEAEAAAAQKRMVELKTTSAAEAAAREKSSADYLRRRLREAEATLEAKA
ARRASLLSKQQQQQQQQQQQQRQQQAHLTDRRRQAWRRENWGGGGDGTDG
EGRDSGSDGGVDGGRGTSNRWARQRARRKIGVLGKLGSAGADGNGGSDAG
AAVVLGLREELGSCRKKLAVVTEEASRLRKEAAVSGKRMERRRNRDYGEG
EEEEAIEGARKTGGRRGVVRPGKSCVVCGEPSRCVRERQRARERRLEVRM
AESEDARIEVEAEAGRLQAFLDEMRGLGPPFGQPWRGGGGGEMAAE*
back to top

mRNA from alignment at P-littoralis_Contig149:347707..352086-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig149.98.2 ID=mRNA_P-littoralis_Contig149.98.2|Name=mRNA_P-littoralis_Contig149.98.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4380bp|location=Sequence derived from alignment at P-littoralis_Contig149:347707..352086- (Pylaiella littoralis U1_48)
GACGAAACCAAAATGAAAGAGAGAAAGGGGTCCATGCCAATCCTAACTCT CGCGCATGACGCGCCACGCGGGTTCGTGGAGCTTCGCGGCGCTGTGATGG AACTCGTCGAAGAGGGTGCTGCTCTCGGGTTGACGACGGTCGAGCTATTT CTCCAGCTCGGCGCTAGTGCTTCTTCAGAGGGGATCGGCAGCCGCGAGCT ACGAAAAGGTCTGGCCTCCTTGAGCGTTCATCTGACGGAAACCGAGATCG AGACAGTGATGGCGGGGGCGGGTTGCACCAACGGCAGCAGCCACAACAAC CCGGCTTCCGGTCGACTTCTAACCTTGGAGAGGTTTCTGGCCATGGTTCA GAATCCGCTCGGACGGCAGCAAACGGTGCTGCCGATCACTTCAGCGGGTA TCACGGTTGCTGGTGCTCATAGTGCTGGTGCTGGTGCTGGCGCTATTGCG CCTGCGCTCGACATGCAGCAGCCTTCTCCGCCTGTAGAACTCGGTCGCGG TATACCGCACAGCGACAGCAACAGAGATGCGATAGAAGAAGATGACGGGT GCGTGACCCCCGACAGCCTGGCGCCGAGGATGTCCTTGTCGGAGCTACTG GTGGAAGTCCGGGAGGTTGGCGGTGGCGGCGGTGGTGATGATGGTGACGG GCCCGGCACCTCTAGCTCCGCCGCGGCACATGTGGAGGCGTTCGGGCGGG TGGCCGTGAATGTGCAAGCGATGCTCGCCACTGCCATCTCTAAAAGCGGG ACGGAATACACCGGCGGCGCCGGCGATGGGGGCGATGGGGGCGACGGTAG TGGCGGCGGCAGGCAGGGCGAACAATCCTCAAGCGTTAGCGGTAATCCTA GTCGGCGAAGTAGATCCGACGGCGGTCATAAGGGGTCCCAAGCGCCTACT CCGTCGAACCCATCATCACTCTCGATGGCCACGGCTGCTGTTGAAACTGC TAGCAAAAGCCGACTCGAGGGGGAGGGGAAGACCAGCCGCGACGATGAGG ACAAGGAGGAGAAGCAATACGGAGAGGAGGAAGAAATTGCCGCACCGACG CCGACGAGCAGCAGAGTGTCTGCCCCCGCATCGCGATCTGGCCCGGTCCC TCCCACGGGTGCGATTACGCCCCCGTTTGGGCCCGCCCGATCACCCTCAG AGCCCCTCCACCCCACCCGTGCTTCTCGAGAACGGCTGAAGGCTGCCCTA GAGGGCCTGGACCTAAAGGAACGCTTGAGGCCCACCACCACTGTTGGGGG AAACGGCGACAACGACGGCGATGACGATAATGATCATACCTCTGACACTG CTCTGAGCGTGAACAGGAGGGCTCGTCGCGGAAGCGCTCGGGCACGCCTG CCTGCTGAGAGTAGCGGCAGAACAGCAGCAGCAGTAGAAGCGTCGCGGCG GTGTGCGTCGAGCTCCGAGGGCAGTCATCGGAGACGATCCGCCACCGCCG CCACCGCCGCCCCTGCTGCCGCCGCTGCCGCCACCCCCGCCGGCCAAGCA GCACTCTACTCCCACCGATTGGAGTCAGTTAATATTGGTGGTAGTGCGGC CAGCACCAGCAGCAGGAGCAAGCGAGTCTCGGCGATTAGACCACATACGG TGGCGGGTATTGACGATAAAGGTGCGCGGGTCCGTCGTTTATCGAGCAAC AGAGGTGCCGGCGGTGCAGGGTCGGAACGGCGCGGGCGCCTGGGAGAAGT GGTAGACTTGGCTGCGGCAGAAGGGGGGGAAAGCGTCGCGTACGACGGTG GGGCGGACGACGCGCCGGAGGTGATAGGACGTCTTCGGGCTAAAGTTGCT GAGCTGGAGCTTACGGGGCAGGTGAGTTTTGGTTACTTGAGAGGGGTTGA GGTGTTCACCCCCTTGAAAATTAAGCGGACCGAGACTGTATGGTACTATT TTTCATCAGTTGCTGAAAAGGGACTTTGGCTCGAAATCGTTATATTGGTA CATACCAAGCTTAATCTCTTCTTGCAGCCTCAACATGAGACCCCACTTTG TATGTACTCATTTTGCCTCCTCTCTTGTACATTAACGTTGTGCACCAACG CTTTAGTTATTTGACCATGCGCGGCACATGTCGCAATTGCTTGCAACGAC GCGTTTTTCCCTTCCGTTTGTGTTTGATTGTTGCATGAAGCTGCTTTTCG CCCGGTTCATCGCCAGTCTCCACTTTAGCGCCGACCGCTCACCCTTTAAC TTATTTGGAGGCTTGTCAAGATAAAACAGATTTGCCCCCACGCGTGGGCA TTGGAATTCAATAGCCCTTGTTTCGTACGCCAAGTGGCACGCATCTGACC TCTACGAAATCGCGCCAGTTGGTGCGACTCAACGGCGTGATTGGTGTGTT GTCCTACGCACGGTGTCCACTCGCAAAGTGCGGCCGACTAAACGCAGAAG ACAAAAATGCCTTGTGATGTATCTTTCCGCTTCTTCGTGTCCGCACCTAG CTCCTCCGGTGCGAGCTAGAGGGAGCGCGCGCAGACCTTACGTCGAAAGC CCGGCGAGCCGAACAGGAGGCGCAGCGAGAGAAGGACAGGGCCAAGGAGC GGGAGCGGATGCTGCAGGCAAAGATGGGGGCACGGCTGAGGGCGGCCGAG GCCGAGGCAGCTGCAGCACAAAAAAGGATGGTGGAACTTAAGACGTGAGC GGCTCTTTGTTTCCACATCAGGGCGGCAGCGGGAGGGGGGGGGGTGTTGG AAAGTGCTCCCTGCCTGGATGGTAGACATCAGGCCCCCCAGCCAAATGTG TTGGTGAAATTTACGTATCCTCGCGGGGTTGTCGACAAAGAGTTCAGACC AGCGAGTAGGCAGGCGGCAATATCGGAAACACTACACTTACAACCAAACG ATGAACAATTATAATCTTGGAACGGCACGAAACAGCACGCAGTGGGGCGA CAAAAAGACGTCTACTGAACGGTTCTAGTAGCTAATTAGCAAGCAGGGTA CGTGGGAGCAAAAATGGGTCGATTTAAAAATAATCATGAAATGAAACGCC ACCTCGAAGTACGTCATCGCAAGAGAACCCCTCCCCCCCCGTCCCTCCCC TCTGCCAGAACCTCGGCGGCAGAGGCCGCCGCCCGAGAAAAGTCCTCGGC GGACTACCTCCGACGGAGGCTCAGAGAAGCGGAAGCGACTCTCGAGGCAA AGGCAGCGCGCCGAGCTTCCTTGTTGTCAAAACAGCAGCAGCAGCAGCAG CAGCAGCAACAACAACAACGACAACAGCAAGCACATTTGACCGACAGGCG GCGGCAAGCATGGCGGAGGGAGAACTGGGGGGGTGGGGGGGACGGCACCG ATGGCGAAGGCAGGGACAGTGGGAGTGATGGGGGTGTGGACGGCGGCCGG GGTACCAGCAACAGGTGGGCGCGGCAGCGAGCGAGGAGGAAAATCGGAGT GCTAGGCAAGTTAGGAAGTGCCGGTGCTGACGGCAATGGGGGCAGTGACG CGGGTGCGGCGGTGGTGTTAGGGCTTCGCGAGGAACTGGGATCTTGCCGC AAGAAGCTCGCCGTTGTTACCGAGGAGGCGTCTAGGCTGCGAAAAGAGGC TGCGGTTTCGGGGAAGAGGATGGAGAGACGTCGCAACAGAGATTATGGGG AGGGGGAGGAGGAGGAGGCGATAGAAGGCGCGAGGAAGACGGGAGGAAGG AGGGGAGTGGTCCGGCCAGGCAAATCTTGCGTTGTTTGCGGAGAACCTAG CAGGTGTGTGTCCCTGTGGTGGTTTTCGCCCATGCTGCGCCCCCCTGTTG CTTGGGTGTTGCGTTGTGGTGCCATTTCCATGCCAACGTAAAATAAACAA AAAAACACCAACAACCTATAATCACTGGTGAAATCGAAGGCTGCTACAAC TTGCCCTTCTGCCCCCCCCCCCCTCCGCTTTATCTTCCTGATCGAACGAA CCCTCTGTCTCTCGAAATCAACCCCACCAGCCGCGAGAGACAGAGAGCGA GAGAGCGAAGGCTCGAGGTCCGGATGGCAGAAAGCGAAGACGCGCGCATC GAGGTGGAGGCAGAGGCCGGCAGGTTGCAGGCGTTTCTCGACGAGATGAG GGGGCTCGGGCCACCTTTTGGGCAGCCTTGGCGAGGTGGTGGTGGTGGGG AGATGGCAGCCGAGTGAAACATTATTAGTGGTTGAAACGAGACAGACGGG GGGCGGTTTGTGGCCAAGGAATATATTTAAATCGTTCAGCGCGCCCCTGT AAGCACGAGAGAGGGCCAGTATGGGAGTCAGGGTTTACTGCTTGTCCAGG CTGGCTTGCCTATTACAACGGTATTGTAAAGAGTAAGGTGACAGAAAAGT ATTGAGCCACGGCTTTTGATTGCTTTTTTCACGCATTTTAACATGGTACA GGTCACCCCGGTGGGTCAGTTCACACTTTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig149:347707..352086-

>mRNA_P-littoralis_Contig149.98.2 ID=mRNA_P-littoralis_Contig149.98.2|Name=mRNA_P-littoralis_Contig149.98.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2841bp|location=Sequence derived from alignment at P-littoralis_Contig149:347707..352086- (Pylaiella littoralis U1_48)
ATGAAAGAGAGAAAGGGGTCCATGCCAATCCTAACTCTCGCGCATGACGC
GCCACGCGGGTTCGTGGAGCTTCGCGGCGCTGTGATGGAACTCGTCGAAG
AGGGTGCTGCTCTCGGGTTGACGACGGTCGAGCTATTTCTCCAGCTCGGC
GCTAGTGCTTCTTCAGAGGGGATCGGCAGCCGCGAGCTACGAAAAGGTCT
GGCCTCCTTGAGCGTTCATCTGACGGAAACCGAGATCGAGACAGTGATGG
CGGGGGCGGGTTGCACCAACGGCAGCAGCCACAACAACCCGGCTTCCGGT
CGACTTCTAACCTTGGAGAGGTTTCTGGCCATGGTTCAGAATCCGCTCGG
ACGGCAGCAAACGGTGCTGCCGATCACTTCAGCGGGTATCACGGTTGCTG
GTGCTCATAGTGCTGGTGCTGGTGCTGGCGCTATTGCGCCTGCGCTCGAC
ATGCAGCAGCCTTCTCCGCCTGTAGAACTCGGTCGCGGTATACCGCACAG
CGACAGCAACAGAGATGCGATAGAAGAAGATGACGGGTGCGTGACCCCCG
ACAGCCTGGCGCCGAGGATGTCCTTGTCGGAGCTACTGGTGGAAGTCCGG
GAGGTTGGCGGTGGCGGCGGTGGTGATGATGGTGACGGGCCCGGCACCTC
TAGCTCCGCCGCGGCACATGTGGAGGCGTTCGGGCGGGTGGCCGTGAATG
TGCAAGCGATGCTCGCCACTGCCATCTCTAAAAGCGGGACGGAATACACC
GGCGGCGCCGGCGATGGGGGCGATGGGGGCGACGGTAGTGGCGGCGGCAG
GCAGGGCGAACAATCCTCAAGCGTTAGCGGTAATCCTAGTCGGCGAAGTA
GATCCGACGGCGGTCATAAGGGGTCCCAAGCGCCTACTCCGTCGAACCCA
TCATCACTCTCGATGGCCACGGCTGCTGTTGAAACTGCTAGCAAAAGCCG
ACTCGAGGGGGAGGGGAAGACCAGCCGCGACGATGAGGACAAGGAGGAGA
AGCAATACGGAGAGGAGGAAGAAATTGCCGCACCGACGCCGACGAGCAGC
AGAGTGTCTGCCCCCGCATCGCGATCTGGCCCGGTCCCTCCCACGGGTGC
GATTACGCCCCCGTTTGGGCCCGCCCGATCACCCTCAGAGCCCCTCCACC
CCACCCGTGCTTCTCGAGAACGGCTGAAGGCTGCCCTAGAGGGCCTGGAC
CTAAAGGAACGCTTGAGGCCCACCACCACTGTTGGGGGAAACGGCGACAA
CGACGGCGATGACGATAATGATCATACCTCTGACACTGCTCTGAGCGTGA
ACAGGAGGGCTCGTCGCGGAAGCGCTCGGGCACGCCTGCCTGCTGAGAGT
AGCGGCAGAACAGCAGCAGCAGTAGAAGCGTCGCGGCGGTGTGCGTCGAG
CTCCGAGGGCAGTCATCGGAGACGATCCGCCACCGCCGCCACCGCCGCCC
CTGCTGCCGCCGCTGCCGCCACCCCCGCCGGCCAAGCAGCACTCTACTCC
CACCGATTGGAGTCAGTTAATATTGGTGGTAGTGCGGCCAGCACCAGCAG
CAGGAGCAAGCGAGTCTCGGCGATTAGACCACATACGGTGGCGGGTATTG
ACGATAAAGGTGCGCGGGTCCGTCGTTTATCGAGCAACAGAGGTGCCGGC
GGTGCAGGGTCGGAACGGCGCGGGCGCCTGGGAGAAGTGGTAGACTTGGC
TGCGGCAGAAGGGGGGGAAAGCGTCGCGTACGACGGTGGGGCGGACGACG
CGCCGGAGGTGATAGGACGTCTTCGGGCTAAAGTTGCTGAGCTGGAGCTT
ACGGGGCAGCTCCTCCGGTGCGAGCTAGAGGGAGCGCGCGCAGACCTTAC
GTCGAAAGCCCGGCGAGCCGAACAGGAGGCGCAGCGAGAGAAGGACAGGG
CCAAGGAGCGGGAGCGGATGCTGCAGGCAAAGATGGGGGCACGGCTGAGG
GCGGCCGAGGCCGAGGCAGCTGCAGCACAAAAAAGGATGGTGGAACTTAA
GACAACCTCGGCGGCAGAGGCCGCCGCCCGAGAAAAGTCCTCGGCGGACT
ACCTCCGACGGAGGCTCAGAGAAGCGGAAGCGACTCTCGAGGCAAAGGCA
GCGCGCCGAGCTTCCTTGTTGTCAAAACAGCAGCAGCAGCAGCAGCAGCA
GCAACAACAACAACGACAACAGCAAGCACATTTGACCGACAGGCGGCGGC
AAGCATGGCGGAGGGAGAACTGGGGGGGTGGGGGGGACGGCACCGATGGC
GAAGGCAGGGACAGTGGGAGTGATGGGGGTGTGGACGGCGGCCGGGGTAC
CAGCAACAGGTGGGCGCGGCAGCGAGCGAGGAGGAAAATCGGAGTGCTAG
GCAAGTTAGGAAGTGCCGGTGCTGACGGCAATGGGGGCAGTGACGCGGGT
GCGGCGGTGGTGTTAGGGCTTCGCGAGGAACTGGGATCTTGCCGCAAGAA
GCTCGCCGTTGTTACCGAGGAGGCGTCTAGGCTGCGAAAAGAGGCTGCGG
TTTCGGGGAAGAGGATGGAGAGACGTCGCAACAGAGATTATGGGGAGGGG
GAGGAGGAGGAGGCGATAGAAGGCGCGAGGAAGACGGGAGGAAGGAGGGG
AGTGGTCCGGCCAGGCAAATCTTGCGTTGTTTGCGGAGAACCTAGCAGGT
GTGTCCGCGAGAGACAGAGAGCGAGAGAGCGAAGGCTCGAGGTCCGGATG
GCAGAAAGCGAAGACGCGCGCATCGAGGTGGAGGCAGAGGCCGGCAGGTT
GCAGGCGTTTCTCGACGAGATGAGGGGGCTCGGGCCACCTTTTGGGCAGC
CTTGGCGAGGTGGTGGTGGTGGGGAGATGGCAGCCGAGTGA
back to top