mRNA_P-littoralis_Contig149.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig149.45.1
Unique NamemRNA_P-littoralis_Contig149.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig149.45.1 vs. uniprot
Match: D7FW89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW89_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 4.900e-30
Identity = 91/175 (52.00%), Postives = 104/175 (59.43%), Query Frame = 3 
Query:  435 MNLPRSSLLGRLEAFLPEIEKANQTTEKLAQEGTLEVLDKNLEVAGTDQQREEA-GTDXXXXXXXXXXQAPEGEALGIGA--APRRTVQLVSAGNQVDFALGDFDDTPIAKMERDKEEANQAEGAESGATGGMAEEEGGVEGESGVAGLVRVVPQTEVDAVAPREKSRKPLIEEL 950
            MNLP SSLLGRLEAFLPE+EKANQ TEKLAQEG LEVL        +D+Q E A GTD          +   G+  G     A  RTVQL       DFALGDFDDTPIAKME++KE A +A G ++GATGG+ EEEG  EG   V           V   A  +K  +PLIEEL
Sbjct:    1 MNLPPSSLLGRLEAFLPEMEKANQKTEKLAQEGKLEVLXXXXXXXXSDKQTEGAEGTDDEAGDSEVEEEEEGGQVEGAAGVVAAGRTVQL-------DFALGDFDDTPIAKMEQEKEAAREAGGVDAGATGGVEEEEGVEEGGDVV-----------VPGAAHPKKPSQPLIEEL 157
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BLAST of mRNA_P-littoralis_Contig149.45.1 vs. uniprot
Match: A0A836CNZ4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNZ4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.700e-8
Identity = 43/116 (37.07%), Postives = 62/116 (53.45%), Query Frame = 3 
Query:  435 MNLPRSSLLGRLEAFLPEIEKANQTTEKLAQEGTLEVLDKNLEVAGTDQQREEAGTDXXXXXXXXXXQAPEGEALGIGAAPRRTVQ----LVSAGN--QVDFALGDFDDTPIAKME 764
            M LP SSLLG+LEAFLP++ +AN+  ++   EG  E +D +L +   D   EE+ +              EG+    GA+ R   +    +   G   Q+ FALGDFDDTP+A+ E
Sbjct:    1 MELPPSSLLGKLEAFLPKLAQANRDLQQQTLEGQAETIDAHLALDAADGNDEESESSDG-----------EGDVAVAGASARAINEGAGDMQGGGKVVQLSFALGDFDDTPVAQFE 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig149.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW89_ECTSI4.900e-3052.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CNZ4_9STRA1.700e-837.07Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig149contigP-littoralis_Contig149:172783..175619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1767
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_003810.1
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789704.2488642-UTR-P-littoralis_Contig149:172782..1735961680789704.2488642-UTR-P-littoralis_Contig149:172782..173596Pylaiella littoralis U1_48UTRP-littoralis_Contig149 172783..173596 -
1680789704.2827628-UTR-P-littoralis_Contig149:174644..1746741680789704.2827628-UTR-P-littoralis_Contig149:174644..174674Pylaiella littoralis U1_48UTRP-littoralis_Contig149 174645..174674 -
1680789704.2912433-UTR-P-littoralis_Contig149:175215..1756191680789704.2912433-UTR-P-littoralis_Contig149:175215..175619Pylaiella littoralis U1_48UTRP-littoralis_Contig149 175216..175619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789704.2609382-CDS-P-littoralis_Contig149:173596..1738331680789704.2609382-CDS-P-littoralis_Contig149:173596..173833Pylaiella littoralis U1_48CDSP-littoralis_Contig149 173597..173833 -
1680789704.2727711-CDS-P-littoralis_Contig149:174362..1746441680789704.2727711-CDS-P-littoralis_Contig149:174362..174644Pylaiella littoralis U1_48CDSP-littoralis_Contig149 174363..174644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig149.45.1prot_P-littoralis_Contig149.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig149 173597..174644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig149.45.1

>prot_P-littoralis_Contig149.45.1 ID=prot_P-littoralis_Contig149.45.1|Name=mRNA_P-littoralis_Contig149.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=173bp
MNLPRSSLLGRLEAFLPEIEKANQTTEKLAQEGTLEVLDKNLEVAGTDQQ
REEAGTDEEEGEEEEQEQAPEGEALGIGAAPRRTVQLVSAGNQVDFALGD
FDDTPIAKMERDKEEANQAEGAESGATGGMAEEEGGVEGESGVAGLVRVV
PQTEVDAVAPREKSRKPLIEEL*
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mRNA from alignment at P-littoralis_Contig149:172783..175619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig149.45.1 ID=mRNA_P-littoralis_Contig149.45.1|Name=mRNA_P-littoralis_Contig149.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2837bp|location=Sequence derived from alignment at P-littoralis_Contig149:172783..175619- (Pylaiella littoralis U1_48)
ATACTTTGTATGTGTTCTTCGTATGCGTCAGTGATACAGCTGATACAAAT
CCTCTCTTGTTATGCCCTAGTTTGGGCGAGGGCGTGGTCGTCGTCGTAGT
CCTCCTGCAGTGAAGAAGCGAAGCGTGGTTGGCGTGGCATTTATGTTCCC
TCGATCCATGGCAAAAAGTCGGAAAGATGTGCCTAAACAGCATAATTTGT
GGCTCGACTCACAGGCACGAAAGTTGAAGTCGGACGGGTTTTGGTATTGC
GCGAGGTAGGCTTTGTGTTCCCCAACATGGACCAGACTGCTGTAATTGTG
TTAATGACCGATCATGGAATTTATCGCTCGCTGCCCTTGTTACGTATTTA
TGTTCAGCACAGCGCCAGCAGTTGGGGCGCTCGTTCGATGCACAGGCACG
AAAGGTGAAGTCGGACGGGGTTTGGTGTTGTACGAAGTAGGCTTTTAGCT
CCCCAACATTGACCAGCTGCTGTAGTTGTGTAAATGACCGATCATGAGAT
TTTTTTACGCTGCCCTTGTTGTTATGTACTTATATTCAGCACAGCGCTAG
CAGTCGGGGCGCTCGTCCTCGTTTGTTCGCCGCATGCCTATTGTCGCCTT
TTATCATTGTGTATTGTGTTTCACGGCATTTTATTCCTTTTTTTTTTCCT
GGGGGCGAAAAATTCCCGGCATTTCTCCAACTTCCCATGTTTACTTTTTT
TTTCCCGCACACATCGTTTACTGTTTGAGTGCATGTTCATATGTATTTTC
GGCGTCAAATTGTTGCGCCACTTGCCGCGTGGGCATTCATCTAATTCTTT
ACAAATATTCGGCGGTGTACCCATCAAGATATTGTTTCATCTGTGCATGC
ACACGGAGTTGTTCGCCATGGTGAGTTCTTGCATGCAGCAGACTTCCCCC
TCTTCATCTCTCAACCAACACGTACAAATGGGTGCCGCAATTCAGACAGG
GAATAACGTACGCAACGGCAAGACCATGAACCTTCCCCGGAGTTCCTTGC
TGGGGCGGCTGGAGGCATTCTTGCCGGAGATTGAGAAAGCCAACCAAACC
ACAGAAAAGCTAGCCCAGGAGGGAACGCTGGAGGTTCTCGACAAAAACCT
CGAGGTTGCGGGAACAGACCAACAGAGGGAAGAGGCAGGAACTGACGAGG
AGGAGGGAGAGGAGGAAGAACAAGAGCAGGCGCCGGAAGGGGAAGCGTTG
GGGATAGGGGCGGCACCTCGCAGGACAGTGCAGCTAGTGAGTGCTGGGAA
TCAGGTGGTAAGGGAGGGAGGCAGAGTACAGAGGGTCCGAGGTTCGTTCC
CATATGAAGGACAAAACTAGTTCGACAGGTGGTGTTAGCATTTAGGTGAA
AAAAAAATGTGCACGGTATCAAGAGGTAGAACAATGCCTCTTGACACTAC
GGTCCCAACCCACGTTGCTGACTTCACGGGTTCCGGTCAGCGGCGCAGTA
CTCAAACCAGCTTCGATGATGTGCCCGTTTCCTTCCTTCTCATGGTTATC
ATGGGAAGACCGGGACGGCGTTCGGGTATCTTGCTGCGACAACACTTGCA
TTGCAGCCAATACCGCGTTCACGAGACAATCGAAGCTCGCCTCTACCTGG
CTCGTTGACGAGCACATGGCAGTCTCCCTCATGCCAAATTTGGGCTGTGG
AAGTCGACTCTATTTTTTGCTTTTATTGCGCATTTTGATTGCAAAATAGC
ATCCGCCTGGTGCGACACAGCACGAACCACACTAGCTCACGCCTCACCGC
ATGTACGACACGTGTGATGATGTGTGCCTTGGTCAGGACTTTGCTCTTGG
TGACTTCGACGACACCCCGATAGCCAAAATGGAACGAGACAAGGAAGAAG
CCAATCAAGCCGAGGGAGCAGAGTCCGGCGCCACGGGTGGCATGGCAGAA
GAAGAGGGGGGGGTGGAGGGAGAAAGTGGGGTGGCCGGCTTAGTACGTGT
TGTGCCTCAGACGGAGGTCGACGCTGTGGCACCGCGAGAAAAATCGCGTA
AACCTTTGATAGAGGAGTTGTAGGAAACAGATCAGTTGCGTTCCACCCGA
CGCCCTCCTCAAGTCGCACGCACGTTTTTGTGCTTTATCGTGAGAAAGGA
GAATTATTCCCGATTATTTGCATGTGTGGTGTCACAAGAACCGCATGCAA
TTTGTCGAGGGGAGGTACGGACTGTAGCTCAGTTGTGCTTCTCCGCATGT
GGAAGACGGGGTAGAAGGTTCAGGCCGAGTCTTGATACAAAATCAACTCC
CAACTCCGAGTCTGAATCAGGCGAGAAGTCTGGAGAACCCCAACACCACA
TCCTGCGGTTGGTAAGGGAATCGGTTCGGTAAGGTAACCTCCCGCCCCGC
GACAGACCGCGGTTCCACACGATCTGTAATACTTACTTCGAAGTTGGGTT
TCTATGCCAAGTTTGGATTTGAAATCGAATGCCGAAGACGTTGCTAGTCC
AAGATGCTAATTTTTTTGCAATGAGGCATTTCGTGAACACGAAAGTGTCT
TTACCTGGTTGTCATGCAGCCTTAAGAGGAGAGGAGAGAGAAAATGAGAA
GATATGAAAATATGCAGAAAATAATACGAAAATGGACTTTTGGGAAGATT
ATTTGTGTTTGATCACATTCCAAGTTGGCAGAACGGAACCAATATTTTTG
TTACAAATGTGCGTTCTTGGTTCACTAGGTGGTCTTGGGCAGGTGTCGGT
GACTGTTTTTGCTGTCTCAGAGCTAGCTGGATTTGCTGCTGTTTAAAAGT
TGCAAGAAGCGTAGACTGCACGCACGCACACCGACCAACGTTCGTTACAA
CCAATATAAATGCTTTCATTATGTCATCACAAGCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig149:172783..175619-

>mRNA_P-littoralis_Contig149.45.1 ID=mRNA_P-littoralis_Contig149.45.1|Name=mRNA_P-littoralis_Contig149.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig149:172783..175619- (Pylaiella littoralis U1_48)
ATGAACCTTCCCCGGAGTTCCTTGCTGGGGCGGCTGGAGGCATTCTTGCC
GGAGATTGAGAAAGCCAACCAAACCACAGAAAAGCTAGCCCAGGAGGGAA
CGCTGGAGGTTCTCGACAAAAACCTCGAGGTTGCGGGAACAGACCAACAG
AGGGAAGAGGCAGGAACTGACGAGGAGGAGGGAGAGGAGGAAGAACAAGA
GCAGGCGCCGGAAGGGGAAGCGTTGGGGATAGGGGCGGCACCTCGCAGGA
CAGTGCAGCTAGTGAGTGCTGGGAATCAGGTGGACTTTGCTCTTGGTGAC
TTCGACGACACCCCGATAGCCAAAATGGAACGAGACAAGGAAGAAGCCAA
TCAAGCCGAGGGAGCAGAGTCCGGCGCCACGGGTGGCATGGCAGAAGAAG
AGGGGGGGGTGGAGGGAGAAAGTGGGGTGGCCGGCTTAGTACGTGTTGTG
CCTCAGACGGAGGTCGACGCTGTGGCACCGCGAGAAAAATCGCGTAAACC
TTTGATAGAGGAGTTGTAG
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