mRNA_P-littoralis_Contig1012.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1012.4.1
Unique NamemRNA_P-littoralis_Contig1012.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1012.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1012contigP-littoralis_Contig1012:14646..16298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size255
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789354.1991928-UTR-P-littoralis_Contig1012:14645..147251680789354.1991928-UTR-P-littoralis_Contig1012:14645..14725Pylaiella littoralis U1_48UTRP-littoralis_Contig1012 14646..14725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789354.2104602-CDS-P-littoralis_Contig1012:14725..147281680789354.2104602-CDS-P-littoralis_Contig1012:14725..14728Pylaiella littoralis U1_48CDSP-littoralis_Contig1012 14726..14728 +
1680789354.2220228-CDS-P-littoralis_Contig1012:16127..162981680789354.2220228-CDS-P-littoralis_Contig1012:16127..16298Pylaiella littoralis U1_48CDSP-littoralis_Contig1012 16128..16298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1012.4.1prot_P-littoralis_Contig1012.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1012 14726..16298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1012.4.1

>prot_P-littoralis_Contig1012.4.1 ID=prot_P-littoralis_Contig1012.4.1|Name=mRNA_P-littoralis_Contig1012.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MVFFFLNLPTHQCVRLSPDKDLEQILQRTQRVKYVYQCFYTQQPVYRCSS
PEGIRLNK
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mRNA from alignment at P-littoralis_Contig1012:14646..16298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1012.4.1 ID=mRNA_P-littoralis_Contig1012.4.1|Name=mRNA_P-littoralis_Contig1012.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1653bp|location=Sequence derived from alignment at P-littoralis_Contig1012:14646..16298+ (Pylaiella littoralis U1_48)
TATATTTCAAATTGATCCTATCGGCAACCGCTTTCGTTCAAGCCGCTCCT
CGGTAGGTTTTGTGGAATACCCACCGAGATATGGCATGTCGCAATTTTAC
GGCAAAGTCGCCTCTCACTCTCAATGAAATAGTTCGCTCTCAATCTGGCG
AATACTCTGTTTTAACCTTTTACCCGATGGCTGAGCAGTCTTCTCCTTCA
CACTATACTGTAGTGTTTGTTTTCAGGTTTGTTGGTCTTTATTTTCATGT
AATAACACGGGATTCTGAAAAATGGGATCGAATTTCAAAAATGGGAACCA
GCTTTTTTTTTTCTGTTTGAATCCTCCACAAGGTATCACCCTCTAGGTAC
CTTCGAAGGCCATCTATGCCCAAGTAGCATTGCTGCCCGAGTTGTTGTCG
AGGTGGCTTCACGAGGATTTACTGCGTACCTGTGTGGGACCCATCACAAC
GTCTATTAGTGCCATCAACTCTGAAAATGATACATAGCAGTAAGTATTTA
TTTCCAGCAGAAAAGTGACGGCCATCCTTGACTTCACGATCCTTCAAAGG
TAAATGATTTTTGAGGTACACAAATTTGAAATCAAAGTCAAGGATGGTTG
TCACTTTTCAAGTTGACTGGAAAATAATACTGCTATCATTTTCAGAGTTA
ATGGCACTAATAGACGCTGTGATGGGTCCAACACAGGTACGCAGTAAATC
CTATTGACGCCACCTCGACAACTACTCGGGCAGCAATCAATGCTACTTGG
GCATAATAGATGGCCTTCGAAGGTGCCTAGAGGGTGAGGGTGGCTCTTGT
CAAATTGGTGACCGTATTCAAAATCAAAAACAAACTTGGATTTTGATTCT
GATTCCGTGTTGGGTCCGATCTGCTGCAGCTTTCGTTTGTCCAAAATCAA
AAGCGGATAAAAAAAAGAGGGGTCACAGACAGACAGGTGGTGTGTGATAT
GAGCATGCCGTGTCTCGATTCTAAGACAAGTGCGGGAGCTGTCGTGCCTC
AAACGAAGAGCACGATGGTGCCCCACGTCGCCCTGATTCAGGCGCGTTGG
TAGTTCTTTGTTTGGGATCGATAACCGAAAAACTCGGCAAGAGATGAGTA
AGTATACGTGTTGCATATCTGCCATTTTTTGGAGGTAGCGGCTGTGTCAG
CCACGCAAACAAACAGCAGTTGAGCAACAAACTTCCTGCACACTTCTACA
CACACACTTGAGTGCTGCTCTCCGAATTCTGGTCGGAATTCGCTCAAACA
AAGTGATCTGTATTCTGCGTAATACCAGCTTTCTCCGGAGCTAGCACATG
TGCACAGCCTGGGTCTACACGTTGTGCTGTGGCCAGCTAAGCAAACGTAC
GGAGTGTGCACCATGTGCTCCCGGAATGCACAGCAAACACCTCTCTGTCT
CATATTCTAGGTCTCTTCGTTTTTGAGCCAGCCGCGTTTTTGATCTATTG
GCGGGAAGAAACGTGTTTTTACTTTCCTTCCCGTTTTTTTTTTTTTAAAC
TTACCAACACATCAATGTGTTCGTCTCTCTCCAGACAAGGATCTCGAGCA
GATATTGCAACGAACACAAAGAGTGAAATACGTCTACCAGTGTTTCTATA
CTCAACAACCAGTGTACCGTTGCAGCTCCCCTGAGGGTATCAGGCTCAAC
AAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1012:14646..16298+

>mRNA_P-littoralis_Contig1012.4.1 ID=mRNA_P-littoralis_Contig1012.4.1|Name=mRNA_P-littoralis_Contig1012.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig1012:14646..16298+ (Pylaiella littoralis U1_48)
ATGGTTTTTTTTTTTTTAAACTTACCAACACATCAATGTGTTCGTCTCTC
TCCAGACAAGGATCTCGAGCAGATATTGCAACGAACACAAAGAGTGAAAT
ACGTCTACCAGTGTTTCTATACTCAACAACCAGTGTACCGTTGCAGCTCC
CCTGAGGGTATCAGGCTCAACAAG
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