prot_P-littoralis_Contig149.19.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig149.19.1
Unique Nameprot_P-littoralis_Contig149.19.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length1481
Homology
BLAST of mRNA_P-littoralis_Contig149.19.1 vs. uniprot
Match: A0A6H5L398_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L398_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 2.370e-121
Identity = 377/762 (49.48%), Postives = 431/762 (56.56%), Query Frame = 0
Query:    1 MAAMLFSGGRGKDGSVWTDNSASPNGGNQDSSTGEATAPSPSGSEGNPSGSGIPAAGVSTTCHACTTGRISRSVTCQGCHKTFHWTCMGFYEHKYQRPGPNWRCKDCKIVEPPSPAAAGGGAASPAE-PVQEVPSPESGNSIDVGEETPVSTTPPKMVPPVAAVQSETARVVTAVRE--ALTAVGTVTGSAPAPTGPPAGTTALAAAVPSPMGEHICPICRKGVGRFRNVECSVCRMPSHAGCVNVRGAETPKSWVCRDCKPDAHATAGTIPKDATAAVTSRPSVAAQTRPLGPALSSQPMDLLGQLIHQRPRSLQIQSASPAVYTAASAYRRNEAFSSDVNGSGSTGVLGEDLSDYEGSGEETDSDEGRASPRSSAA-KVAQIEAKSLDTTARLQSLMAQRDVVMNGASPSAAPPWAGGERAEEKVGTETNDGCEW-------DSDMDMAMEDLQESFPPPKRSNRQSVGRQKPPPASSAKPQRTPPAAHPPAPASPQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAVSLPPSTGTELLIPEESAGDLAV----VPALLAPQAPQLSATPTQSSSHAPLTSMVPAVTGAEPFSPSAEGWSLAPEGEQPPLPLSAPPLPXXXXXXXXXXXXXXX--AGAATRISSASNAEMEFIPLGRSSSGGGGKASPERGRAARAGAKVAGTGKKSFLYSDEEQKAMGGASRRAGQA-KGKSGDLPAVRTKVKGRKLGAGAKPKVATLFTDEGQAVAKKR 744
            MAAMLFS   GK+G++W DNSA+ NGG      G           G+P+G+G+PAAG   TCHACTT R+SRSVTCQGC KTFHWTCMGFYEHKYQRPGPNWRCKDCK  E     A GG AASPA    Q V   ESG +IDV +      TPP+ V  VAAV + T     AV    A     T      APT P          VPS  GEH+CP+C+KG+GR R ++CS+CR PSHAGCVNVRGAETPKSWVCRDCKP A ATAG  P D   A  +   VAAQT                             S SP V TA  A RR+E+ S   +GS S GV GEDL D+EGSGEETDSD+ R SPRSSAA KVA+  AK L  TA+L++LM+QRD VM G   + A   A G+   E+ G+ +    E        D   D   E ++ S P P RS R+                        P P  P  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       PS G  + + +   GD  +                S   T SS     +S    V GAEPFSPSAEGWSL   G QPPL        XXXXXXXXXXXXXXX   G     + ASNAEME IPLGRSSS                  K  GTG+KSFL+SDEEQ+AM   S   G+A KGK   + A R KVK +KLGAG KPKVAT+FTDEGQA A ++
Sbjct:    1 MAAMLFSDAGGKEGNMWGDNSANSNGGVCSEKNGA----------GSPTGNGVPAAGAFATCHACTTARVSRSVTCQGCEKTFHWTCMGFYEHKYQRPGPNWRCKDCKTAE-----AGGGEAASPAALATQAVQLRESGEAIDVDDSL---ATPPETVRLVAAVPTATVTSSAAVASPSAXXXAATPPVELAAPTTP---------TVPSSTGEHMCPVCKKGLGRKRTMDCSMCRTPSHAGCVNVRGAETPKSWVCRDCKPRAQATAGGYPGDGAQAKAATLLVAAQT-----------------------------SISPIVSTATLASRRDESASRGASGSDSVGVPGEDLPDFEGSGEETDSDQDRRSPRSSAAAKVAETAAKELVATAKLEALMSQRDKVMGGMGVATAA--ASGKEGRERGGSTSAGSGEAAERGEGEDHGRDAPAEGVEGSSPSPSRSQRKGAAXX----XXXXXXXXXXXXXXXPVPXLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-----PSAGPPVSVKQHVVGDAGLEXXXXXXXXXXXXXXXSTASTPSSHGVQFSSTASTVPGAEPFSPSAEGWSLGRTGAQPPLXXXXXXXXXXXXXXXXXXXXXXXRSTGGIGWAAGASNAEMELIPLGRSSSSXXXXXXXXXXXXXXXXXKAVGTGRKSFLFSDEEQRAMEDVSGGGGKAAKGKPTTILAARKKVK-KKLGAGIKPKVATVFTDEGQAAAARK 694          
BLAST of mRNA_P-littoralis_Contig149.19.1 vs. uniprot
Match: A0A6H5L1S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1S6_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.700e-35
Identity = 115/276 (41.67%), Postives = 151/276 (54.71%), Query Frame = 0
Query: 1127 DIEKDVMRARRKVSGGGAWSPETPSRRQDERRRTASPAAGPAASKPSPGGGASLTPMXXXXXXXXXXXXXXGDGSAARARGAQSQPPPLAGNALSSAYDHLPMPTSSLEFHPSMGGDDFFPSLEDQLSDPVMRGSFTSVASPLRRSSRSSSVTSPTRANLVASPTKCGGVGGASGATDKAASAVAP--PSASARTSVFSASEAASSTKTDRPETVKAAGMFDGGNGLAPIDGSKTRWEKEQENSDLSCATEDKRKASPSARS---LPPPPHPPHLL 1397
            DI++DVMRARRK SG    SPE   RRQD RRR  +PA+G   SKPSP G AS TP+               DGSA+R RG +   P  A N + + +D +P+P S    +  MGGDDF  SLED LSD  M G+F SV SP+RRSSRSSS+TSP+RAN V SP    G G A+      A+   P  P A A T  F +S    +T ++ P+ + A+G    G  +AP++G   + E+ Q  +D    T      +P + +   LPP P  P  +
Sbjct:   77 DIDEDVMRARRKYSGAEVRSPEATLRRQDARRRPETPASGSTKSKPSPRGRASFTPLKSTGSSTDHHLEGASDGSASRGRGTKGHQPVHAPNTICAQFDQVPLPPSI--GYNGMGGDDFISSLEDPLSDSFMSGAFPSVGSPVRRSSRSSSITSPSRANHVPSPAITAGGGDAAAMASPDAATPGPNIPGAPAPTPPFRSSGPGPTTASNEPKAIAASGKSSCGRDIAPMEGGVIQRERGQVCNDAMTTTNHDNHGAPYSSAISCLPPAPEEPSAV 350          
BLAST of mRNA_P-littoralis_Contig149.19.1 vs. uniprot
Match: D7FW82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW82_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 8.050e-32
Identity = 113/276 (40.94%), Postives = 145/276 (52.54%), Query Frame = 0
Query: 1127 DIEKDVMRARRKVSGGGAWSPETPSRRQDERRRTASPAAGPAASKPSPGGGASLTPMXXXXXXXXXXXXXXGDGSAARARGAQSQPPPLAGNALSSAYDHLPMPTSSLEFHPSMGGDDFFPSLEDQLSDPVMRGSFTSVASPLRRSSRSSSVTSPTRANLVASP--TKCGGVGGASGATDKAASAVAPPSASARTSVFSASEAASSTKTDRPETVKAAGMFDGGNGLAPIDGSKTRWEKEQENSDLSCATEDKRKASPSARSL---PPPPHPPHLL 1397
            DI++DVMRARRK SGG   SPE   RRQD RRR  +PAAG   SKPSP G ASLTP+               DGSA+R RG +   P  A N + + +D +P+P S    +  MGGDDF  SLED LSD  M G+F +V SP+RRSSRSSS+TSP+RAN V+SP  T  GG   A  + D A                             P+   A+G    G  +AP++G   + E+EQ  +D    T+D    +P + +L   PP P  P  +
Sbjct:   77 DIDEDVMRARRKYSGGEVRSPEATPRRQDARRRPETPAAGSTKSKPSPRGRASLTPLKSAGSSTDHHLEGATDGSASRGRGTKGHQPVHAPNTICAQFDQVPLPPSI--GYNGMGGDDFISSLEDPLSDSFMCGAFPNVGSPVRRSSRSSSITSPSRANHVSSPAITVGGGDAAAMASPDAATPXXXXXXXXXXXXXXXXXXXXXXXXXXEPKATAASGKSGCGRDIAPMEGGVIQREREQVCNDAMTTTKDDMHGAPYSSALSCLPPAPEEPSAV 350          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig149.19.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L398_9PHAE2.370e-12149.48PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L1S6_9PHAE3.700e-3541.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW82_ECTSI8.050e-3240.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 213..258
e-value: 0.0017
score: 27.6
coord: 61..108
e-value: 1.0E-4
score: 31.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 206..259
e-value: 1.9E-5
score: 26.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 49..112
e-value: 1.6E-5
score: 26.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 450..464
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1357..1382
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 560..577
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1313..1336
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 735..1403
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 469..489
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1113..1137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 604..631
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1257..1287
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 402..723
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 883..954
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 339..375
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 492..530
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1060..1096
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 955..1007
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 775..814
NoneNo IPR availablePANTHERPTHR13491:SF0ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 10coord: 60..1076
NoneNo IPR availableCDDcd15489PHD_SFcoord: 213..257
e-value: 2.04906E-6
score: 44.2302
NoneNo IPR availableCDDcd15489PHD_SFcoord: 61..107
e-value: 2.54326E-6
score: 43.845
IPR039715Zinc finger CCHC domain-containing protein 10PANTHERPTHR13491ZCCHC10 PROTEINcoord: 60..1076
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 62..107
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 59..110
score: 8.688999
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 206..260
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 59..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig149contigP-littoralis_Contig149:103395..108901 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig149.19.1mRNA_P-littoralis_Contig149.19.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig149 103252..121175 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig149.19.1 ID=prot_P-littoralis_Contig149.19.1|Name=mRNA_P-littoralis_Contig149.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1481bp
MAAMLFSGGRGKDGSVWTDNSASPNGGNQDSSTGEATAPSPSGSEGNPSG
SGIPAAGVSTTCHACTTGRISRSVTCQGCHKTFHWTCMGFYEHKYQRPGP
NWRCKDCKIVEPPSPAAAGGGAASPAEPVQEVPSPESGNSIDVGEETPVS
TTPPKMVPPVAAVQSETARVVTAVREALTAVGTVTGSAPAPTGPPAGTTA
LAAAVPSPMGEHICPICRKGVGRFRNVECSVCRMPSHAGCVNVRGAETPK
SWVCRDCKPDAHATAGTIPKDATAAVTSRPSVAAQTRPLGPALSSQPMDL
LGQLIHQRPRSLQIQSASPAVYTAASAYRRNEAFSSDVNGSGSTGVLGED
LSDYEGSGEETDSDEGRASPRSSAAKVAQIEAKSLDTTARLQSLMAQRDV
VMNGASPSAAPPWAGGERAEEKVGTETNDGCEWDSDMDMAMEDLQESFPP
PKRSNRQSVGRQKPPPASSAKPQRTPPAAHPPAPASPQKPATAPKANATT
APEGNTTTAPEDNATTATEANATMARAVSLPPSTGTELLIPEESAGDLAV
VPALLAPQAPQLSATPTQSSSHAPLTSMVPAVTGAEPFSPSAEGWSLAPE
GEQPPLPLSAPPLPPPPLPPPPPPPPPPSAGAATRISSASNAEMEFIPLG
RSSSGGGGKASPERGRAARAGAKVAGTGKKSFLYSDEEQKAMGGASRRAG
QAKGKSGDLPAVRTKVKGRKLGAGAKPKVATLFTDEGQAVAKKRPVSPSG
PRDDTVVNMSEVLAMIHDRKLQQEMSSRGSAQPPHSPRPSNSLPVSTPVT
GPRTKRQSTRWAPPRSGSADVKSGVQAPPASAVEATAGRKTPKGGQKTPR
GKPAKPGGNHSSSPRNGGKSPNVGKSKGHRRRSTSSSSTASSSSSSNSSS
SSSSSSSNSSSTSSTSGTSGSNSSYSSSRSRSGTQGRSRSSSSHSNNRSR
SNNRRGEYQTSRREERGGARSCGRGTSREYHERSSSYGSGRGREERGRID
TRNYDSSRGDWSGKGGGYRLSSGSRGRGGEHGINHGGRGGIRPHGEGKGA
YVFGNRAESTKLRFYEKDPREEASAGRGRAGPGRSKDYEESDSYGRDSRS
SGGGGSGGGSRDRNRSKSTERRGRGRDIEKDVMRARRKVSGGGAWSPETP
SRRQDERRRTASPAAGPAASKPSPGGGASLTPMAGPGHVTEQPSGGAGDG
SAARARGAQSQPPPLAGNALSSAYDHLPMPTSSLEFHPSMGGDDFFPSLE
DQLSDPVMRGSFTSVASPLRRSSRSSSVTSPTRANLVASPTKCGGVGGAS
GATDKAASAVAPPSASARTSVFSASEAASSTKTDRPETVKAAGMFDGGNG
LAPIDGSKTRWEKEQENSDLSCATEDKRKASPSARSLPPPPHPPHLLQTK
RPFRRRIRNPWRWKMLNRLLLRGKPPHGDKSMALRARRYSPCPPRIVALS
TTRQKKSMFQLWPLQRLPLKRAQSVRLATA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR039715ZCCHC10
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD