mRNA_P-littoralis_Contig149.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig149.14.1
Unique NamemRNA_P-littoralis_Contig149.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig149.14.1 vs. uniprot
Match: V5BN05_TRYCR (Ribonuclease inhibitor n=1 Tax=Trypanosoma cruzi Dm28c TaxID=1416333 RepID=V5BN05_TRYCR)

HSP 1 Score: 51.6 bits (122), Expect = 5.910e-5
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 2 
Query:   89 SLSELNLSAHKIGPGAAEALARALRESLSITSVNCSLNPALGDEGARLLVPALRTDGTGVSTVRVLSLMRCGIGHVGAAALAQGLRRNSVLERLNLTGNSLGD 397
            +L EL+L+ +++ P   +A+A+ALR S  + S++ S NP  G E   +  P L T G+G++    LSL  C +      A+   L  N  +  LNL+ N +GD
Sbjct:  264 ALKELDLAFNRLEPSGIDAIAKALRASPQLQSLDLSGNP--GVEPPSMRAPLLVTKGSGIAR---LSLRSCKLHFALFGAMNAELMSNGDIVELNLSANPIGD 361
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BLAST of mRNA_P-littoralis_Contig149.14.1 vs. uniprot
Match: Q4CNN5_TRYCC (Ribonuclease inhibitor, putative (Fragment) n=2 Tax=Trypanosoma cruzi TaxID=5693 RepID=Q4CNN5_TRYCC)

HSP 1 Score: 51.2 bits (121), Expect = 8.320e-5
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 2 
Query:   89 SLSELNLSAHKIGPGAAEALARALRESLSITSVNCSLNPALGDEGARLLVPALRTDGTGVSTVRVLSLMRCGIGHVGAAALAQGLRRNSVLERLNLTGNSLGD 397
            +L EL+L+ +++ P   +A+A+ALR S  + S++ S NP  G E   +  P L T G+G++    LSL  C +      A+   L  N  +  LNL+ N +GD
Sbjct:  458 ALKELDLAFNRLEPSGIDAIAKALRASPQLQSLDLSGNP--GVEPPSMRAPLLVTKGSGIAR---LSLRSCKLHFALFGAMNAELLSNGDIVELNLSANPIGD 555
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig149.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
V5BN05_TRYCR5.910e-533.98Ribonuclease inhibitor n=1 Tax=Trypanosoma cruzi D... [more]
Q4CNN5_TRYCC8.320e-533.98Ribonuclease inhibitor, putative (Fragment) n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig149contigP-littoralis_Contig149:44316..47070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5691.EAN80312
PFAMsLRR_6
Model size401
Max annot lvl5653|Kinetoplastida
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.13e-06
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota,3XSVJ@5653|Kinetoplastida
DescriptionLeucine Rich repeat
Cds size381
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789703.1703978-CDS-P-littoralis_Contig149:44315..443981680789703.1703978-CDS-P-littoralis_Contig149:44315..44398Pylaiella littoralis U1_48CDSP-littoralis_Contig149 44316..44398 -
1680789703.1846828-CDS-P-littoralis_Contig149:45584..458601680789703.1846828-CDS-P-littoralis_Contig149:45584..45860Pylaiella littoralis U1_48CDSP-littoralis_Contig149 45585..45860 -
1680789703.196671-CDS-P-littoralis_Contig149:47029..470511680789703.196671-CDS-P-littoralis_Contig149:47029..47051Pylaiella littoralis U1_48CDSP-littoralis_Contig149 47030..47051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789703.211549-UTR-P-littoralis_Contig149:47051..470701680789703.211549-UTR-P-littoralis_Contig149:47051..47070Pylaiella littoralis U1_48UTRP-littoralis_Contig149 47052..47070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig149.14.1prot_P-littoralis_Contig149.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig149 44316..47051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig149.14.1

>prot_P-littoralis_Contig149.14.1 ID=prot_P-littoralis_Contig149.14.1|Name=mRNA_P-littoralis_Contig149.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
MVPDGQYGDSGVREQAQLWGKDESLSELNLSAHKIGPGAAEALARALRES
LSITSVNCSLNPALGDEGARLLVPALRTDGTGVSTVRVLSLMRCGIGHVG
AAALAQGLRRNSVLERLNLTGNSLGDA
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mRNA from alignment at P-littoralis_Contig149:44316..47070-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig149.14.1 ID=mRNA_P-littoralis_Contig149.14.1|Name=mRNA_P-littoralis_Contig149.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2755bp|location=Sequence derived from alignment at P-littoralis_Contig149:44316..47070- (Pylaiella littoralis U1_48)
CGCACCTTCGCGCGTCGGGATGGTACCCGATGGACAATATGGTACGTGGT
TGATAACGTTAAGTACGTGGTTAATATTACACAGATTGCTCGCGTGCGGA
GTGCTCTACAAACGTTTTGCATCACGTGACTGGTGAAGACTGATGTCCTG
TCTTCTCTACAACTGTGTACGGCAGGCATAAAAAGATGTCTTGTATTTGG
ATCCAGATTTTCCTCGTATGTACAGCACCGATCGCCCCGGTGGTCAAGTG
GTTCCCTCGTTAACCTACTAGTCGTAAGGTTGTAGGTCGATTCTCCCTAA
GAGCGTTCCTTGCGACTTTACAGTGGAAAGCGAATTACTCGTCAGTAAAC
AGAGGGAAGAGATTGCTATGTACCCGAACCAAAGGCACGTACCGCAGGAG
GGGAAGGTGCGTGTGGGGAATAAAACAAAATAAATTCAAAAAAGCTCGTG
TGTGACCTTCCTTCTGTATGACCCCGGCTGATCCACCCACTTCACACCGA
AAGGTGAAGACTGGTGCCCAGAATTAATGGGATGACAACACAGCAGTAGA
TCGAGTTTGAATCCCAGGGGGTTCGGGGTTTTCCCCTTTCCCAAAAATCA
AGATGGTCAAACCCTTCTCGCTGCAAAAATCAAGACACAGGCACCGCAGA
AGGAAGGCGGAGAAATAAAGCTCCTGTGTGTTGATCTTCCTCCTGGGTGA
CCCCCGGCTGGTGCACATAACTTGGTATCAAATTGACTGCTGCTGTGCGT
CCAAAATATGAGACGACAACACACGCGCACACACTGAGTGACCCTCTGCT
GCAATGACCCCGTCTGATGCTCCCACCTGTACTGTACCAAAATGTGTTAC
TGGTAAGGCGTAGACAGACGTCCAGAACAGACGGGATGACATCAACTCAC
GCATACCTGGTACTTTTGAGACGTGATACATCATAAAATAAACTTATTTA
GGCAGGTAGATCGTTGTATGATGTACGTGTGTGTGTAGCTAACCATTAAA
GGCAGCATTGCGTAGCCCCAAGTTCGAAAAATCCGTGAACAAGAAGAAAG
AAACACCCACCTGAAAAGGAGAGTCAGTTGGGGTCATCTTGTCCTGACCA
ACCAGGAAACTGTGTCTTTCTTTGCAGTGAACTGCGTGAATGATTGCATA
CATGCACCTCTTACACTAAACTGTATATCCTCAAAGCTAGTTCGCCAAAT
CACCTTACAGGCGATAGCGGCGTGCGAGAGCAAGCACAGCTGTGGGGTAA
AGACGAGAGCCTTTCCGAACTCAACCTCTCGGCGCACAAAATTGGACCCG
GTGCAGCGGAGGCACTGGCACGTGCGCTGAGAGAAAGCTTGTCGATAACG
TCGGTGAACTGCTCCCTGAACCCTGCGCTTGGGGATGAGGGAGCTAGGCT
CCTTGTGCCGGCCCTGCGTACCGACGGCACGGGCGTATCGACGGTTCGGG
TATTAAGCCTCATGCGATGCGGAATCGGACATGTAGGTGAGGAAGTGCCA
TGTTGAAGCAAGTGCGCGCACGACGTGGGGCTAGCTGTGCTTTCGTGTAC
GAATGGGTGCTTGTTTACAAAGGAAATTCTCCCTCCGGTGCGTTACCGAG
AACCTCAAAGTCGATTTTTTCGTTGGTCTTCTGGCACACTCTGGCTGATT
TGTTTCATTGGTGTACATAAACAATTGAGTCAACTGATATGGTGTACGTT
CGCGACACTCCATGATTTACGCTTCTCGTATATATCTCAAAGAAAAACGG
ACGTGGTGTCCTCTTAGCTGCATCTGTACAGAATGGGGTATGTCTGTGTT
CTGCAGGGAACGACCAAAGTTCTGGGCCGTACGGTGTCAACCGCCAAGCG
ACAAAAACTTCAAATCATACTTCGAAGTATGGCGTGGTGTGACACGTAAG
ACGGCCACAAAAACGTCGAGTGAGTCTCATATCCACTGCTGTTGCTACTA
TCAGAGGAGATGCAGCTTTATAGATTCAGAAAAACAAGAATGTAGACAAC
GCTTTGTGTTCACTGCAACAGGTGTCTCTGGATTTTCGTCCGAAGCAAAG
GTGAATACGTTCATGTATGCAGGACAAATACAATAAGTAATACGGAAACA
CACAACTAGCCGGAGCACGCACAATTTGCGGTACACCTTTCCAGCAACAC
AGCTTAATCTGCCTCTTTCTCACTGATCTAACCAAGAGAAGAGAGATGCT
ACTAGCTGTACTCCTAGGGAGGTGAACCTATCGTACTAAAGATCCGTTGT
AGACCATCAAACAAATGGTCCTTGCGCGCACACTTGCCATTAACGTGGGT
TCGTGCCGTTGTACGTGGCGGTGCGAGCCGCCGACACTCTGCGACACGTC
GAGTATTTGCTCATGGGCGTTCTGAACGAAATGCTTAGAGGAACACAAGA
TAACTCGAGCATAGACGCCGAAACGAAAGTTCCTGGTGCATGAAGTCTCT
CGCGCCACGCAAGGTAACTGAATCGTCCTCATCGCACTTCAGAGCACTGT
CATTTGATTTCACAGAAGGCGACAACGTGTAAGGTGTGCCTTGTGGGTGC
AGCTTCGTTCACGTCTTTCCTCCTTCAAGAAAAAGAAGCAGTTTCACGAT
TGTTGCCATCGTATGATAACCACTTCGAAGTATATCTTTGTGGGCTTGAC
ATTCTTCCATCACGTGCACCAGGCGCGGCTGCTCTAGCCCAAGGACTTCG
CAGGAATTCAGTCTTGGAGCGACTCAACCTCACCGGTAACTCTCTAGGGG
ATGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig149:44316..47070-

>mRNA_P-littoralis_Contig149.14.1 ID=mRNA_P-littoralis_Contig149.14.1|Name=mRNA_P-littoralis_Contig149.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig149:44316..47070- (Pylaiella littoralis U1_48)
ATGGTACCCGATGGACAATATGGCGATAGCGGCGTGCGAGAGCAAGCACA
GCTGTGGGGTAAAGACGAGAGCCTTTCCGAACTCAACCTCTCGGCGCACA
AAATTGGACCCGGTGCAGCGGAGGCACTGGCACGTGCGCTGAGAGAAAGC
TTGTCGATAACGTCGGTGAACTGCTCCCTGAACCCTGCGCTTGGGGATGA
GGGAGCTAGGCTCCTTGTGCCGGCCCTGCGTACCGACGGCACGGGCGTAT
CGACGGTTCGGGTATTAAGCCTCATGCGATGCGGAATCGGACATGTAGGC
GCGGCTGCTCTAGCCCAAGGACTTCGCAGGAATTCAGTCTTGGAGCGACT
CAACCTCACCGGTAACTCTCTAGGGGATGCC
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