mRNA_P-littoralis_Contig149.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig149.20.1
Unique NamemRNA_P-littoralis_Contig149.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig149.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig149contigP-littoralis_Contig149:98426..103297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size211
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789702.2582982-CDS-P-littoralis_Contig149:98425..985921680789702.2582982-CDS-P-littoralis_Contig149:98425..98592Pylaiella littoralis U1_48CDSP-littoralis_Contig149 98426..98592 -
1680789702.2685535-CDS-P-littoralis_Contig149:103254..1032971680789702.2685535-CDS-P-littoralis_Contig149:103254..103297Pylaiella littoralis U1_48CDSP-littoralis_Contig149 103255..103297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig149.20.1prot_P-littoralis_Contig149.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig149 98426..103297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig149.20.1

>prot_P-littoralis_Contig149.20.1 ID=prot_P-littoralis_Contig149.20.1|Name=mRNA_P-littoralis_Contig149.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
LLQVPRFVRAFFSRPVCDNQPLSSFPTPPTGVRYPVCECQGPFAAFQNPC
LSTIGCPRSLKAALCSVKK*
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mRNA from alignment at P-littoralis_Contig149:98426..103297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig149.20.1 ID=mRNA_P-littoralis_Contig149.20.1|Name=mRNA_P-littoralis_Contig149.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4872bp|location=Sequence derived from alignment at P-littoralis_Contig149:98426..103297- (Pylaiella littoralis U1_48)
CTCCTTCAAGTTCCTCGGTTCGTCCGTGCGTTCTTTTCTCGACCTGCCAG
ATACGACCAGGACGAGGAGGACGCCGCTTTAACTTTGACTGAATTCATTA
CATGAGCGCTTAGAAAATAATACTCGACGCGACCGGTGTACAAGATTGTG
TCAAAAACGAGTTGTGAAAACATGCACAGCATGGTACGACCAGGACAATT
TCCGATATTTGTCGCACCTTAACCGCATATCGTACGTGGACTTTTTCGGA
TGGGGTGGGGTTGCCAGGAAATTCATGACACAATAACACCCTTTTTCCAG
GCGAAGAAAGCTGTGGAGAGTTTCTGTTTATCGCCCCCTTTGTCTTCATA
TAACAAAAATGAAAATACAAAAAAAATGTTCGCTTTCGCCTTGGGCGTGT
ACTTCACGGGAAAAAATGTGACACACGGATTTGGACAGCTCTTGGTATTT
GCACGACGGGAATTTCTTTTCAAGAGCGAAAATTGGCGTGGAGTTATTCA
GAAAAAAACGGATTAAGCAGGTTATTTTGTTCGCCTCTGTTTGCGATAAC
CAACCGATTGAGTTTCAATGAGAGTGCGGCAAAAGCTTCCTTCCACCAAC
ACTTCGAGTTCTTGTTTCCTTTTTTTTTCGGAAAAACAAACAAAAACAAA
CTTTCACGAGATATGCTGCATTTTGTGTTGCACTGAGACTGGCTTGAGTG
ATTGATGAACCGGAAATGAAAATTCCGCGGGGAAAGAAGCTCAATGTAGC
CGTCACTACGGCCGTTGTTTGACTTTTCCAAATCTACTCCGGAGCACCTG
GTGTATATTTTCGTGAGATGTAGCGCAAAATGTAAACGGACAACTTGTCC
CGGATAGAGGGCATAAATTATATCTGGGGTACGTTTTGCCCTGTTTCGAT
GAAAACATAAACGCGAGGTGATTTCGGCGTAATATCGTTCGGTCTTGCGG
AATATCTGAGTCATTTCCGGGTAATTTTGGATCAAAATATTGCATTACCC
TCCCCTGAAAAAAACTGATGAAGGCTACCACGGAACTTGATCTCGCGATC
ACGAATACTGTTGTTTCAATTTACAATTGATTTTTTCTCTCGACAATAAC
GGCTGCGGGCAGACTTCGATTACCTACCTCACCATCTTACCGGCAGGTGA
CGTAAATTTCGTCTGTCGAGGGAGGGCCACAGTTAGAAGCCCCGGGGAGC
GGTATACCTTGTGGTTTCCGTGCCATCAAGCGATGTGTGTAGTGTCATCT
CGTTTATTTTGGACGCACACACCGTTCGGTGTAAGTTCGGCGCGCCGGCC
GGGGTTTCACAAAAGAAGGGCCTTCCTCTCGTCGATTTTTCAAGGCGGCC
TTTGTATGCTCGCGAAATAATCGTCGGTTTCAGGAAGTGAAACCCCGACC
GGAAGTCGAACTCGCGACCTAGGTCTCAAAAGGCTTTGACGCTACCAACC
GGACCACTGAGGCGGCCGTGCACTAAAATAAACAACTTGATGTTTTAGCC
CCATGAGCGACGTTGATTTGCCGACTGAACCTCGTCCAGCTTTCAGACAC
CAGATGTCGGCAGCATATGACATCGGCATTTTTCAGGTCGGGTACCACCG
TCTTTTTGCGCGACCCGCTCCGTTTTTTGGGGGGATATTTCCTGAGTCAT
TCGCCCGAAGCCTTTGACACTTCAACTTTCACATAAAACTTGACCAATCA
AGGAAGCCACGTCACGTGGTGCCCAAAATACAGGTAAAAAAATGACATAA
TTCCTAGGCACGTTGTTTGTGTACCTCTCGGCACGTCATCTATGCACCGA
CCAGTTGCTCTTCATACGGAATATGTCCGCGGTTTTACAGCAGTAGTTTT
TGTTCGGCTTTTGTAGCAGCACCAGTTTGCAGCAAGCTGTACCGTGCCGA
TGTCGGTGCATTTCAAACGTGCCGAGAACGTGCCAAGGGGATCTGTAACG
TAGAGCACAGCAGAGCACCACCCTGCAGCAAGCCATACGCCGAAGGGATC
GGTGCATACACAACGTGCTGAGGGGATCTGGATATTTGTGCCTGTATATG
GCACGACGTGATATGGTATTCTTGAAACATTAAGTTTGATGTGTGCAGTC
GAACTGCCAACGGCTCTTGGGCGAGTGGCCTCGGGAATATCCCGCCGCAA
GCTAAAAGACGGTGACAGTCGACCTGAGGACCGCCGATGTCGGTAACTGT
GGACTGCTGGTGTCTTAACAGCGGTACAAGGCTTAGTTGGCCAATCAGCG
TCATGGATGTGACTCAAATGTCCAGGAATTTTTTCATCGCACCGCTGTGT
GGCGCGGACACCAGGCGGTATGGCGGTATACAGAAGTACAGGTTCTGGTG
TGCGTTCTTAACAACCACGAACAAGCTACCGTATGATAGCGTGTTCATTG
TTACCGAGTACAACCGACCACATTGGACTGACTGACAAGCGGTAGAGGCG
CAATCGACCCATCTGCCGCACACGCAGAAAGAAAACAAATGAGGGCTCTT
CAAACAAAAACGCAGAAACACGAACAGCACATTCGGTGGGATACGAAACT
GGAAAACGCGCAAAAAAGAACGACTCGAGTATTAGAGAGGGAAATACATT
ACTGAACCATTCTCGTGATAAAACCATAGACAGTTATCATACCGTAGAGA
AAAAGGAGAAGGAGGGGGGGGGCGGCGTAGTCCTCCTGAGTGACGCGGCT
GTACAATCATGTCGGACCGTAGGTCTCATGAGATACGGCACCCCCCCGGA
CCGATTTTCAAAGGTCGGTTGCTCAACAGCACATAAGTGTTGGTTCCAAA
CACGACAGTATTATAACTGCCTCGTCGCGAGCTTTGTATCGCATCCTTTT
ATGTTGGGGCACCTCTTTGTTGTGGAGTAATCGACTTTTGAAAATCGGTC
AAGGGTGTGTGTTTGAAATTCGGTCAGGGGTTTGGCAATTGCGTGACCTT
CGGTAAGCTAGAGACGTTGGAGGAGAAGACTTCATACACTTGCAGTGAAA
TCGTCCGCCTGTGTCAAGGACGTAGATGCCAATAAGACAAAAATCTCTAA
ACAAGGAAGCACGTGGTTTCTAAAAATTTCAGGTTGCCGCCCCTTATCAA
GGCACCCTAGATAATGTATTCCAATTTTGCCGAATTTTGGAATCCTGCAA
AGAGCGCCCAAAACGTCACGAAACAGGGCCATCAGACCAGTAGAAAGGGT
TGGGGGCCGAAACAACGGCTGGAAGGTGGTCGTTGGGGCGCTATCGCGAC
ACAAATGTTGTGATTCAGAACTCTGTATTAGTTTCGCGAACTCTAAATTC
AAGATGATAAGCTTCCTCAGCTCTAGAGTCAAGACACAACAGTAAACACG
AGAGGGCGCTAAAATAAGACCTGTGGTGTGAACTAAGCCGGGGTCACGGG
ATGATCAGTAGAGACATCATGTAGAACGGACTTTTATGTTGGCTAGCTCA
GATCTTCCGCTGGGGCTGTGCTGTTGGTTGAAATTGTCGTATCATACAGC
AGTCGAGATTCTGTCCGCTTCTCGGCCCGAGATCAACCACCTTGCATAAT
CTTCCAATTGCAATCTTCCACTTCTGTCCTCACCGCCATGGGCCCCAATC
TCCGTAACTTCGGGCCCAAAGCAGTAGCTCATACCACTTGCTGCCTGGGA
CAACGCTCAGTTCAGGCTATTGGGGCCCCATGGCGGCGAGTACAGCAGTG
GAAGATCATGTAAGATGTTTGGTTTCGGGGTGAGATGCGGACGGTTTTTG
GGCTGCTGCACCACATACCTTCGACCACCGATATCACAGCCACAGCACAC
GCTCTGAGATTGCCTGTCGCGTCTATCATACATGATGTCTTCTCTTGATA
TCATTCATAATGTCGGCTTAATTCATACGGGAAGGTCGATTTCTATTTTT
GATAGTTTTTCGTACTGGATAAAGAGTAGATATTTTTTTGAATTTTAGTA
GATTAAGGGTCCAGGGACAAGGGCGGTGAAAAATTCCTTGCAGAAAACCA
TTTTTTTGATCTGAAAGAACATTTTCAGCTTGAATCAAGTCACAAGAGCT
TATTTTGATAAGGCTGAAACATGGGCTGTCGTCTGTGCGTGCGTGATAAC
AAGGATTGAATCAGAAACATCATGTAGTAGCTACATCTGCGTCGGCGCAT
TCAGATCTGCTTCTGGGCCTTAGATATCGAAGTTCGCAGCAGTGGCACAA
GAACTCCGCAGGATCCCTGAAAAACTCCGCGATCCGGACTGACCCTAAAC
GTTTGACGCAGCTGTACTCGCCGCCATCGGCACCAATCTTCTGAACTGCG
GTTTGTCCGAGGTGGCTATTAGCATAGGCTACTGCTATTGACCCGTATTT
TTAGAGGTTAGGGTATGTGGCGTAGACTACAGCAGTGGGAGATGGCACAG
CAGTGGAAGATGATTTTTGGAATCTGTCCATTTTGCGGAGTTTTTGATCC
TCTACTGCGACCATCGACATCTAAGCCCCAGCAGCAGCTCTGAATGCGCC
GACGCAGATTTAGCTACTACCTGATGTCTTCTCCTGATCCAACCCTTGTT
ATCGGGTACGCACAGACGACAGCCCATGCTTAAGCCTTATCAAAATAAGC
TCTTTTGACTTGATTTTAGAGTCGTTAAAAATTTTATCTTGATGTTTATG
TCAGAGATTGGAGGTAGACATGTGATATGCATGTGAAGAGGAGCCCCCGC
CGCACCTGTGTGCGATAACCAACCGCTTTCCTCTTTCCCGACACCCCCTA
CTGGTGTGAGGTACCCAGTGTGTGAGTGTCAGGGCCCGTTCGCTGCTTTT
CAAAATCCGTGCCTCTCGACGATCGGTTGTCCCAGGAGCCTTAAGGCAGC
GCTGTGTTCAGTAAAAAAATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig149:98426..103297-

>mRNA_P-littoralis_Contig149.20.1 ID=mRNA_P-littoralis_Contig149.20.1|Name=mRNA_P-littoralis_Contig149.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig149:98426..103297- (Pylaiella littoralis U1_48)
CTCCTTCAAGTTCCTCGGTTCGTCCGTGCGTTCTTTTCTCGACCTGTGTG
CGATAACCAACCGCTTTCCTCTTTCCCGACACCCCCTACTGGTGTGAGGT
ACCCAGTGTGTGAGTGTCAGGGCCCGTTCGCTGCTTTTCAAAATCCGTGC
CTCTCGACGATCGGTTGTCCCAGGAGCCTTAAGGCAGCGCTGTGTTCAGT
AAAAAAATAA
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