mRNA_P-littoralis_Contig1486.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1486.4.1
Unique NamemRNA_P-littoralis_Contig1486.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1486.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1486contigP-littoralis_Contig1486:14287..15168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size403
Hectar predicted targeting categoryother localisation
Exons2
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789702.1651628-UTR-P-littoralis_Contig1486:14286..144471680789702.1651628-UTR-P-littoralis_Contig1486:14286..14447Pylaiella littoralis U1_48UTRP-littoralis_Contig1486 14287..14447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789702.1775637-CDS-P-littoralis_Contig1486:14447..145621680789702.1775637-CDS-P-littoralis_Contig1486:14447..14562Pylaiella littoralis U1_48CDSP-littoralis_Contig1486 14448..14562 +
1680789702.189011-CDS-P-littoralis_Contig1486:15043..151681680789702.189011-CDS-P-littoralis_Contig1486:15043..15168Pylaiella littoralis U1_48CDSP-littoralis_Contig1486 15044..15168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1486.4.1prot_P-littoralis_Contig1486.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1486 14448..15168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1486.4.1

>prot_P-littoralis_Contig1486.4.1 ID=prot_P-littoralis_Contig1486.4.1|Name=mRNA_P-littoralis_Contig1486.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
MRGASPEVGQATPQPDDNLRGTLTISQETTRAEDNSSIGRAGSPKGEGGK
YDSPCSHDPQQLHHEAAKLIGCTGMGNQCK
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mRNA from alignment at P-littoralis_Contig1486:14287..15168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1486.4.1 ID=mRNA_P-littoralis_Contig1486.4.1|Name=mRNA_P-littoralis_Contig1486.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=882bp|location=Sequence derived from alignment at P-littoralis_Contig1486:14287..15168+ (Pylaiella littoralis U1_48)
GACGAGCTGGTGACGCTTCTCGGCACCCCTCCTTCGACTGACTACAGCAG
GACTCCAAAGCTTTGGCGGCCGCGATGTTGGAGTAGGCAACAAACTTTAA
ACGACCCACACATCTGCAACTGACGAGAACAGCAAGTATCCGAGGCTGCA
GGAGAGTGCGAATGCGAGGTGCCTCTCCCGAGGTGGGACAAGCAACACCC
CAACCGGACGACAACTTGCGTGGTACACTTACGATATCACAAGAGACAAC
ACGAGCTGAAGACAACAGCAGCATCGGTATTTGAACTAGGCTCTCTGCCT
TTCACGAGTCATCCTGTTATCATACGTACCCGCTTCATAGATAGTCGAAG
AAAAACTGCTCACCGAAAGCCACATGTGCCATCACACCAAAAATGCCTGC
TGTACAGGGGTTGCTGGACACATAAACTACACGAACAGCGGACGATCTGT
AGTAGTATCGAGCAGCATATTTGGTGATGTTGTTGCCGATGCTCGTTGGT
AGTCTAGTACGAAGTATTTAAACATGATGCCATCAACGAAGTTATCGAAA
TTGACGCTGACATAAAATCACACAAATATAGCAGTTAGTAGCACTCGAAA
ACATCGCTCGGGTGTGTTTGGGGTCTCGTAGTTCCAAGAGGCTGTTGGAG
TTTATTTTATGTCTCGATGTTTCTTCGGCTACTGAACATGCTCAGTATGC
TCAGTGAATAAAACACACACCCCCACCCTCGCGTCCCCGAAACGCATGAC
CTGACAGGGCGTGCTGGATCGCCAAAAGGAGAGGGAGGGAAATACGACAG
TCCTTGCTCGCACGATCCGCAGCAATTGCACCACGAGGCGGCGAAATTGA
TCGGGTGTACGGGCATGGGTAACCAGTGCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1486:14287..15168+

>mRNA_P-littoralis_Contig1486.4.1 ID=mRNA_P-littoralis_Contig1486.4.1|Name=mRNA_P-littoralis_Contig1486.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig1486:14287..15168+ (Pylaiella littoralis U1_48)
ATGCGAGGTGCCTCTCCCGAGGTGGGACAAGCAACACCCCAACCGGACGA
CAACTTGCGTGGTACACTTACGATATCACAAGAGACAACACGAGCTGAAG
ACAACAGCAGCATCGGGCGTGCTGGATCGCCAAAAGGAGAGGGAGGGAAA
TACGACAGTCCTTGCTCGCACGATCCGCAGCAATTGCACCACGAGGCGGC
GAAATTGATCGGGTGTACGGGCATGGGTAACCAGTGCAAG
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