mRNA_P-littoralis_Contig1485.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1485.2.1
Unique NamemRNA_P-littoralis_Contig1485.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1485.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1485contigP-littoralis_Contig1485:9467..9660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size184
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789702.046951-UTR-P-littoralis_Contig1485:9466..95431680789702.046951-UTR-P-littoralis_Contig1485:9466..9543Pylaiella littoralis U1_48UTRP-littoralis_Contig1485 9467..9543 -
1680789702.0850072-UTR-P-littoralis_Contig1485:9658..96601680789702.0850072-UTR-P-littoralis_Contig1485:9658..9660Pylaiella littoralis U1_48UTRP-littoralis_Contig1485 9659..9660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789702.0677261-CDS-P-littoralis_Contig1485:9543..95471680789702.0677261-CDS-P-littoralis_Contig1485:9543..9547Pylaiella littoralis U1_48CDSP-littoralis_Contig1485 9544..9547 -
1680789702.0768993-CDS-P-littoralis_Contig1485:9557..96581680789702.0768993-CDS-P-littoralis_Contig1485:9557..9658Pylaiella littoralis U1_48CDSP-littoralis_Contig1485 9558..9658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1485.2.1prot_P-littoralis_Contig1485.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1485 9544..9658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1485.2.1

>prot_P-littoralis_Contig1485.2.1 ID=prot_P-littoralis_Contig1485.2.1|Name=mRNA_P-littoralis_Contig1485.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=35bp
MSIWFCFNCASFQGWCHLVHKFGMMAFMGWATRT*
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mRNA from alignment at P-littoralis_Contig1485:9467..9660-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1485.2.1 ID=mRNA_P-littoralis_Contig1485.2.1|Name=mRNA_P-littoralis_Contig1485.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=194bp|location=Sequence derived from alignment at P-littoralis_Contig1485:9467..9660- (Pylaiella littoralis U1_48)
AGATGAGTATTTGGTTTTGTTTCAATTGTGCCTCGTTCCAGGGGTGGTGC
CATCTAGTGCACAAGTTTGGCATGATGGCGTTCATGGGTTGGGCGACGCG
GACGCGGCGCCAGTTGAAATAGTATGAGACCACGCGGAGTATTGAGTCGT
TGGAACATGGTCTCAGTCGTGCGTCGTACGACATGCGGCACTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1485:9467..9660-

>mRNA_P-littoralis_Contig1485.2.1 ID=mRNA_P-littoralis_Contig1485.2.1|Name=mRNA_P-littoralis_Contig1485.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=105bp|location=Sequence derived from alignment at P-littoralis_Contig1485:9467..9660- (Pylaiella littoralis U1_48)
ATGAGTATTTGGTTTTGTTTCAATTGTGCCTCGTTCCAGGGGTGGTGCCA
TCTAGTGCACAAGTTTGGCATGATGGCGTTCATGGGTTGGGCGACGCGGA
CTTGA
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