mRNA_P-littoralis_Contig1483.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1483.1.1
Unique NamemRNA_P-littoralis_Contig1483.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1483.1.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.410e-31
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    1 EKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFNIDQMQSTMRHMFIDEQSRNGSKGRIAGRGIAMTITTS 225
            EKMGET+SD +F D CVTGFT++YKDVKM+MYRDP FN+D+MQ+TMRHMF+DEQSRNG KG IAGRG AMT TTS
Sbjct:  145 EKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTS 219
[Close]
BLAST of mRNA_P-littoralis_Contig1483.1.1 vs. uniprot
Match: A0A6H5JMT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT8_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.200e-28
Identity = 49/75 (65.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 EKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFNIDQMQSTMRHMFIDEQSRNGSKGRIAGRGIAMTITTS 225
            EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+F++ QMQ+TMR++F+DEQ R  +KG+IAGRG AM   TS
Sbjct:   37 EKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS 111
[Close]
BLAST of mRNA_P-littoralis_Contig1483.1.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.660e-27
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 EKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFNIDQMQSTMRHMFIDEQSRNGSKGRIAGRGIAMTITTS 225
            EKMGE +SDR+FKD+CVTGFT +YK+VKM+M+RDP FN++ MQ+TM HM +DEQSR GSKG IAGRG  M  T S
Sbjct:   30 EKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTAS 104
[Close]
BLAST of mRNA_P-littoralis_Contig1483.1.1 vs. uniprot
Match: A0A6H5JLQ5_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ5_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.250e-27
Identity = 51/75 (68.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 EKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFNIDQMQSTMRHMFIDEQSRNGSKGRIAGRGIAMTITTS 225
            +KMGE +SDR FKDICV GF+D+YKDVK+++ RDPTFN+  MQSTMR++F+DEQSR G KGRIAGRG +M  T S
Sbjct:  100 DKMGEPISDRRFKDICVQGFSDEYKDVKLIVLRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFSMVTTAS 174
[Close]
BLAST of mRNA_P-littoralis_Contig1483.1.1 vs. uniprot
Match: A0A6H5KVX0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX0_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.700e-27
Identity = 51/75 (68.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 EKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFNIDQMQSTMRHMFIDEQSRNGSKGRIAGRGIAMTITTS 225
            +KMGE +SDR FKDICV GF+D+YKDVK++++RDPTFN+  MQSTMR++F+DEQSR G KGRIAGRG A   T S
Sbjct:  167 DKMGEAISDRRFKDICVRGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFATATTAS 241
[Close]
BLAST of mRNA_P-littoralis_Contig1483.1.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.450e-27
Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 EKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFNIDQMQSTMRHMFIDEQSRNGSKGRIAGRGIAMTITTS 225
            +KMGE +SDR FKDICV GF+D+YKDVK++++RDPTFN+  MQSTMR++F+DEQSR G KGRIAGRG AM  T S
Sbjct:  167 DKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTAS 241
[Close]
BLAST of mRNA_P-littoralis_Contig1483.1.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 9.180e-27
Identity = 49/75 (65.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 EKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFNIDQMQSTMRHMFIDEQSRNGSKGRIAGRGIAMTITTS 225
            EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+F++ QMQ+TMR++F+DEQ R  +KG+IAGRG AM   TS
Sbjct:  165 EKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS 239
[Close]
BLAST of mRNA_P-littoralis_Contig1483.1.1 vs. uniprot
Match: A0A6H5K9W5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W5_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.180e-26
Identity = 49/75 (65.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 EKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFNIDQMQSTMRHMFIDEQSRNGSKGRIAGRGIAMTITTS 225
            EKMGET+SDR FKDICV GF++DYKD+KM+++RDP+F++ QMQ+TMR++F+DEQ R  +KG+IAGRG AM   TS
Sbjct:  129 EKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS 203
[Close]
BLAST of mRNA_P-littoralis_Contig1483.1.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.350e-26
Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 EKMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFNIDQMQSTMRHMFIDEQSRNGSKGRIAGRGIAMTITTS 225
            +KMGE +SDR FKDICV GF+D+YKDVK++++RDPTFN+  MQSTMR++F+DEQSR G KGRIAGRG AM  T S
Sbjct:  143 DKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTAS 217
[Close]
BLAST of mRNA_P-littoralis_Contig1483.1.1 vs. uniprot
Match: A0A6H5JQ58_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ58_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.460e-26
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    4 KMGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFNIDQMQSTMRHMFIDEQSRNGSKGRIAGRGIAMTITTS 225
            K+GET+S R FKDICV GF++DYKD+KM+++RDP+F+  QMQSTMR++F+DEQSR G KGRIAGRG AM  T S
Sbjct:   23 KIGETISGRRFKDICVQGFSEDYKDIKMMVFRDPSFDEQQMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTAS 96
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1483.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW66_9PHAE6.410e-3177.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMT8_9PHAE3.200e-2865.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Q1_ECTSI1.660e-2768.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JLQ5_9PHAE2.250e-2768.00CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KVX0_9PHAE4.700e-2768.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JF66_9PHAE5.450e-2769.33CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JXA1_9PHAE9.180e-2765.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9W5_9PHAE1.180e-2665.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KT84_9PHAE3.350e-2669.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ58_9PHAE3.460e-2667.57CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1483contigP-littoralis_Contig1483:1330..1587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size258
Hectar predicted targeting categoryother localisation
Exons1
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789702.0090296-UTR-P-littoralis_Contig1483:1329..13351680789702.0090296-UTR-P-littoralis_Contig1483:1329..1335Pylaiella littoralis U1_48UTRP-littoralis_Contig1483 1330..1335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789702.0200274-CDS-P-littoralis_Contig1483:1335..15871680789702.0200274-CDS-P-littoralis_Contig1483:1335..1587Pylaiella littoralis U1_48CDSP-littoralis_Contig1483 1336..1587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1483.1.1prot_P-littoralis_Contig1483.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1483 1336..1587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1483.1.1

>prot_P-littoralis_Contig1483.1.1 ID=prot_P-littoralis_Contig1483.1.1|Name=mRNA_P-littoralis_Contig1483.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MGETVSDRWFKDICVTGFTDDYKDVKMLMYRDPTFNIDQMQSTMRHMFID
EQSRNGSKGRIAGRGIAMTITTSPASSATSVMSE
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mRNA from alignment at P-littoralis_Contig1483:1330..1587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1483.1.1 ID=mRNA_P-littoralis_Contig1483.1.1|Name=mRNA_P-littoralis_Contig1483.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1483:1330..1587+ (Pylaiella littoralis U1_48)
GAGAAAATGGGGGAAACAGTCTCCGACCGTTGGTTCAAGGACATCTGCGT
CACAGGGTTCACCGACGACTACAAGGACGTCAAAATGCTGATGTACCGTG
ACCCCACTTTCAACATCGACCAGATGCAGTCCACCATGCGTCATATGTTC
ATCGATGAGCAATCACGCAACGGAAGCAAGGGGCGGATCGCTGGCCGTGG
CATCGCCATGACAATTACGACATCTCCGGCTTCATCTGCCACATCTGTAA
TGAGCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1483:1330..1587+

>mRNA_P-littoralis_Contig1483.1.1 ID=mRNA_P-littoralis_Contig1483.1.1|Name=mRNA_P-littoralis_Contig1483.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig1483:1330..1587+ (Pylaiella littoralis U1_48)
ATGGGGGAAACAGTCTCCGACCGTTGGTTCAAGGACATCTGCGTCACAGG
GTTCACCGACGACTACAAGGACGTCAAAATGCTGATGTACCGTGACCCCA
CTTTCAACATCGACCAGATGCAGTCCACCATGCGTCATATGTTCATCGAT
GAGCAATCACGCAACGGAAGCAAGGGGCGGATCGCTGGCCGTGGCATCGC
CATGACAATTACGACATCTCCGGCTTCATCTGCCACATCTGTAATGAGCG
AG
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