mRNA_P-littoralis_Contig1481.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1481.2.1
Unique NamemRNA_P-littoralis_Contig1481.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1481.2.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.150e-25
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 LVCSVASAPPPQVLAEFFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGDGKQVAVSFYGDLDVILHSTVPGKEDVLITLTNVAVVP 300
            LVCSV S+PP +  ++ FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++GDGK + V F+GDLDVI H +    EDV +TL NV VVP
Sbjct:  645 LVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHCS----EDVRVTLQNVGVVP 738
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BLAST of mRNA_P-littoralis_Contig1481.2.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.910e-25
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 LVCSVASAPPPQVLAEFFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGDGKQVAVSFYGDLDVILHSTVPGKEDVLITLTNVAVVP 300
            LVCSV S+PP +  ++ FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++GDGK + V F+GDLDVI H      EDV +TL NV VVP
Sbjct:  645 LVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHC----PEDVRVTLQNVGVVP 738
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BLAST of mRNA_P-littoralis_Contig1481.2.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.950e-25
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 LVCSVASAPPPQVLAEFFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGDGKQVAVSFYGDLDVILHSTVPGKEDVLITLTNVAVVP 300
            LVCSV S+PP +  ++ FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++GDGK + V F+GDLDVI H      EDV +TL NV VVP
Sbjct:  515 LVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHC----PEDVRVTLQNVGVVP 608
[Close]
BLAST of mRNA_P-littoralis_Contig1481.2.1 vs. uniprot
Match: A0A6H5JXN1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.910e-25
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 LVCSVASAPPPQVLAEFFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGDGKQVAVSFYGDLDVILHSTVPGKEDVLITLTNVAVVP 300
            LVCSV S+PP +  ++ FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++GDGK + V F+GDLDVI H      EDV +TL NV VVP
Sbjct:  428 LVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVICHC----PEDVRVTLQNVGVVP 521
[Close]
BLAST of mRNA_P-littoralis_Contig1481.2.1 vs. uniprot
Match: A0A6H5L646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L646_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.000e-24
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 LVCSVASAPPPQVLAEFFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGDGKQVAVSFYGDLDVILHSTVPGKEDVLITLTNVAVVP 300
            LVCSV S+PP +  ++ FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++GDGK + V F+GDLDVI H      EDV +TL NV V P
Sbjct:  790 LVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHC----PEDVRVTLQNVGVAP 883
[Close]
BLAST of mRNA_P-littoralis_Contig1481.2.1 vs. uniprot
Match: A0A6H5JE07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE07_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.560e-24
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 LVCSVASAPPPQVLAEFFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGDGKQVAVSFYGDLDVILHSTVPGKEDVLITLTNVAVV 297
            LVCSV S+PP +  ++ FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++GDGK + V F+GDLDVI H      EDV +TL NV VV
Sbjct:  185 LVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHC----PEDVRVTLQNVGVV 277
[Close]
BLAST of mRNA_P-littoralis_Contig1481.2.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.620e-23
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 LVCSVASAPPPQVLAEFFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGDGKQVAVSFYGDLDVILHSTVPGKEDVLITLTNVAVVP 300
            LVCSV  +PP +  ++ FP+R PGS VF+GDTGAV+H V SG+ VYNRR P L  E+ L++GDGK + V F+GDLDVI H      EDV +TL NV VVP
Sbjct:  573 LVCSVTPSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVASGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHC----PEDVRVTLQNVGVVP 666
[Close]
BLAST of mRNA_P-littoralis_Contig1481.2.1 vs. uniprot
Match: A0A6H5JN93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN93_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.650e-23
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 LVCSVASAPPPQVLAEFFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGDGKQVAVSFYGDLDVILHSTVPGKEDVLITLTNVAVVP 300
            LVCSV S+PP +  ++ FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++GDG  +   F+GDLDVI H      EDV +TL NV VVP
Sbjct:  259 LVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGTHIPGDFFGDLDVIFHC----PEDVRVTLQNVGVVP 352
[Close]
BLAST of mRNA_P-littoralis_Contig1481.2.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.400e-21
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    4 VCSVASAPPPQVLAEFFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGDGKQVAVSFYGDLDVILHSTVPGKEDVLITLTNVAV 294
            VCS  + PP  V+   FPN RPG+ VFMGD+GAV+H V SG+ VYNR  P    E+ L+VGDG  + VSF+GDLD++LH      EDVL+TL NVAV
Sbjct:   69 VCS--ALPPAHVVTADFPNPRPGATVFMGDSGAVIHAVSSGEKVYNRGEPGPD-ERRLMVGDGACMPVSFFGDLDLLLHC----DEDVLVTLKNVAV 158
[Close]
BLAST of mRNA_P-littoralis_Contig1481.2.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.460e-21
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 LVCSVASAPPPQVLAEFFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGDGKQVAVSFYGDLDVILHSTVPGKEDVLITLTNVAVVP 300
            LVCSV S+PP +  ++ FP+R PGS VF+GDTGAV+H VPSG+ V   R P L  E+ L++GDGK + V F+GDLDVI H      EDV +TL NV VVP
Sbjct:  687 LVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKV---RLP-LPEERLLMLGDGKHIPVEFFGDLDVIFHC----PEDVRVTLQNVGVVP 777
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1481.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JVD9_9PHAE2.150e-2559.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN41_9PHAE2.910e-2559.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC2_9PHAE2.950e-2559.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JXN1_9PHAE3.910e-2559.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L646_9PHAE1.000e-2458.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE07_9PHAE2.560e-2458.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS7_9PHAE1.620e-2357.00CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JN93_9PHAE1.650e-2357.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN01_9PHAE4.400e-2155.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KYB5_9PHAE4.460e-2156.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1481contigP-littoralis_Contig1481:10176..10476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789701.9360375-CDS-P-littoralis_Contig1481:10176..104761680789701.9360375-CDS-P-littoralis_Contig1481:10176..10476Pylaiella littoralis U1_48CDSP-littoralis_Contig1481 10177..10476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1481.2.1prot_P-littoralis_Contig1481.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1481 10177..10476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1481.2.1

>prot_P-littoralis_Contig1481.2.1 ID=prot_P-littoralis_Contig1481.2.1|Name=mRNA_P-littoralis_Contig1481.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
LVCSVASAPPPQVLAEFFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRY
PRLVWEKNLIVGDGKQVAVSFYGDLDVILHSTVPGKEDVLITLTNVAVVP
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mRNA from alignment at P-littoralis_Contig1481:10176..10476-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1481.2.1 ID=mRNA_P-littoralis_Contig1481.2.1|Name=mRNA_P-littoralis_Contig1481.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=301bp|location=Sequence derived from alignment at P-littoralis_Contig1481:10176..10476- (Pylaiella littoralis U1_48)
CTTGTTTGTTCTGTTGCCTCTGCCCCCCCTCCGCAAGTACTTGCCGAATT
TTTCCCGAATCGTCGACCGGGATCCATGGTTTTCATGGGTGACACCGGGG
CCGTGCTCCATGGCGTTCCTTCTGGACAACATGTCTACAACCGGCGGTAC
CCGCGCTTGGTGTGGGAGAAGAATCTCATCGTGGGGGATGGCAAGCAAGT
GGCGGTATCTTTCTATGGAGATCTGGACGTCATTCTCCACAGTACGGTGC
CTGGAAAGGAGGACGTCTTGATCACGCTTACCAACGTCGCCGTGGTCCCT
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig1481:10176..10476-

>mRNA_P-littoralis_Contig1481.2.1 ID=mRNA_P-littoralis_Contig1481.2.1|Name=mRNA_P-littoralis_Contig1481.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig1481:10176..10476- (Pylaiella littoralis U1_48)
CTTGTTTGTTCTGTTGCCTCTGCCCCCCCTCCGCAAGTACTTGCCGAATT
TTTCCCGAATCGTCGACCGGGATCCATGGTTTTCATGGGTGACACCGGGG
CCGTGCTCCATGGCGTTCCTTCTGGACAACATGTCTACAACCGGCGGTAC
CCGCGCTTGGTGTGGGAGAAGAATCTCATCGTGGGGGATGGCAAGCAAGT
GGCGGTATCTTTCTATGGAGATCTGGACGTCATTCTCCACAGTACGGTGC
CTGGAAAGGAGGACGTCTTGATCACGCTTACCAACGTCGCCGTGGTCCCT
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