mRNA_P-littoralis_Contig148.131.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.131.1
Unique NamemRNA_P-littoralis_Contig148.131.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig148.131.1 vs. uniprot
Match: A0A7S3UVZ6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVZ6_HETAK)

HSP 1 Score: 199 bits (507), Expect = 1.480e-55
Identity = 101/241 (41.91%), Postives = 144/241 (59.75%), Query Frame = 1
Query:    1 PRDADIQMQGFLDSGTVPVLSFKASPQRVQASLVRPIQLVRTELMSIATGILDRVAGGWGCVEELVQETRGGKIDRQQAEEFIEEYLRHHNIPGKLQIRWVKSLNSGGKLQEYGRRDKPTARRLRLWISSSFAGVQFSRSMIAFADHEICTHAVRAINDHAQVWVNQRGRYGLRS-GGRERLSTEEGLAALNSLLCYPSQTRHMWSAAMLYYCAVKGNDMKFGELHKHLIKYVRCPAKRYW 720
            P DA   +Q FLD G  P   +  SP  ++  + +P   V+T+L+ IA  ILD+V   WG   E  Q+  G  + +++A  ++E+Y+  + I GK++I+W   LN  GK QE G +++P  RR+ LWI+ + AGV+    + +FADHEICTHA+RA+ND  Q W   R RYGL   G R   S+EEGLA L++ L      R + S A+LYY A KG ++ F  L + L  YVR PA+RYW
Sbjct:   19 PLDAAEHLQKFLDDGVAPRFKYAGSPAELEQYVSKPSNEVKTDLLDIAVQILDKVKDSWGADGEFGQKCLGEALSQEEAVNYLEKYILDNKIQGKIKIKWTSKLNIAGKFQETGTKEEPDKRRIVLWINRANAGVRHRTCLESFADHEICTHALRALNDRRQPWAAHRKRYGLHKLGSRISASSEEGLACLHTCLAREKGLRLLASPALLYYAACKGRELPFRALWEALAAYVRSPAQRYW 259          
BLAST of mRNA_P-littoralis_Contig148.131.1 vs. uniprot
Match: UPI001E1D33F5 (uncharacterized protein KIAA0895-like isoform X2 n=3 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D33F5)

HSP 1 Score: 136 bits (342), Expect = 4.020e-34
Identity = 82/244 (33.61%), Postives = 124/244 (50.82%), Query Frame = 1
Query:    1 PRDADIQMQGFLDSGTVPVLSFKASPQRVQASLVRPIQLVRTELMSIATGILDRVAGGWGCVEELVQETRGGKIDRQQAEEFIEEYLRHHNIPGKLQIRWVKSLNSGGKLQEYGRRDK---PTARRLRLWISSSFAGVQFSRSMI-AFADHEICTHAVRAINDHAQVWVNQRGRYGLRS-GGRERLSTEEGLAALNSLLCYPSQTRHMWSAAMLYYCAVKGNDMKFGELHKHLIKYVRCPAKRY 717
            P + + Q Q FL  G  P    + +   ++    +P   +R E +  A  IL  V   +G  E    E  G +I +++A + I +YL+ +++ G++ I W   L   G++   G   K   P AR+  +WI  S          I   +DHEI TH  R+ ND  Q W  +R R+G+R   G E L TEEGLAA+N++L   +  R++W  A+LYY A K  +M F +L +HL KYV  P  R+
Sbjct:   33 PTNLEDQKQRFLTLGKTPEFQHRGTEDELEEIYSKPRSEIRFEYLGEALHILKMVKAKYGDAENYYTEMYGERISKEEATDIIVDYLKENHLDGQMSIIWCTDLPCSGRMMWQGPHVKYRRPEARKYSMWIKDSKDNNFLREKGIRCLSDHEIGTHFFRSYNDGLQPWFAERTRFGIRGISGLEHLRTEEGLAAVNTIL--NANCRYLWGPALLYYIACKATEMTFKQLFEHLEKYVENPEWRW 274          
BLAST of mRNA_P-littoralis_Contig148.131.1 vs. uniprot
Match: UPI001E1DACFF (uncharacterized protein LOC123552187 isoform X1 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DACFF)

HSP 1 Score: 136 bits (342), Expect = 5.380e-33
Identity = 82/244 (33.61%), Postives = 124/244 (50.82%), Query Frame = 1
Query:    1 PRDADIQMQGFLDSGTVPVLSFKASPQRVQASLVRPIQLVRTELMSIATGILDRVAGGWGCVEELVQETRGGKIDRQQAEEFIEEYLRHHNIPGKLQIRWVKSLNSGGKLQEYGRRDK---PTARRLRLWISSSFAGVQFSRSMI-AFADHEICTHAVRAINDHAQVWVNQRGRYGLRS-GGRERLSTEEGLAALNSLLCYPSQTRHMWSAAMLYYCAVKGNDMKFGELHKHLIKYVRCPAKRY 717
            P + + Q Q FL  G  P    + +   ++    +P   +R E +  A  IL  V   +G  E    E  G +I +++A + I +YL+ +++ G++ I W   L   G++   G   K   P AR+  +WI  S          I   +DHEI TH  R+ ND  Q W  +R R+G+R   G E L TEEGLAA+N++L   +  R++W  A+LYY A K  +M F +L +HL KYV  P  R+
Sbjct:   33 PTNLEDQKQRFLTLGKTPEFQHRGTEDELEEIYSKPRSEIRFEYLGEALHILKMVKAKYGDAENYYTEMYGERISKEEATDIIVDYLKENHLDGQMSIIWCTDLPCSGRMMWQGPHVKYRRPEARKYSMWIKDSKDNNFLREKGIRCLSDHEIGTHFFRSYNDGLQPWFAERTRFGIRGISGLEHLRTEEGLAAVNTIL--NANCRYLWGPALLYYIACKATEMTFKQLFEHLEKYVENPEWRW 274          
BLAST of mRNA_P-littoralis_Contig148.131.1 vs. uniprot
Match: A0A814A4L6_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814A4L6_9BILA)

HSP 1 Score: 120 bits (300), Expect = 1.180e-27
Identity = 76/233 (32.62%), Postives = 120/233 (51.50%), Query Frame = 1
Query:   31 FLDSGTVPVLSFKASPQRVQASLVRPIQLVRTELMSIATGILDRVAGGWGCVEELVQETRGGKIDRQQAEEFIEEYLRHHNIPGKLQIRWVKSLNSGGKLQEYGR-RDKPTARRLRLWISSSFAGVQFSRS--MIAFADHEICTHAVRAINDHAQVWVNQRGRYGLRS-GGRERLSTEEGLAALNSLLCYPSQTRHMWSAAMLYYCAVKGNDMKFGELHKHLIKYVRCPAKRY 717
            F +    P+L FKA  Q V  ++V        E   +A  ILD V   +  +    +   G +I+  Q  + + +YL  + I G L I +   L   G++  Y + ++ P+ R+  +WI+      QF R   +I   DHEI TH  R+ ND  Q W N R ++GLRS    E L TEEGLAAL++L+   +  ++++  A+LYY A   + M F +L+ H+ KY+  P +R+
Sbjct:  113 FFNQKIPPILKFKADEQ-VLKNIVNKHSKTSYEHFFLAKNILDTVKSKYPNLVAYYEANFGERINSIQCVDLVGKYLYENKIAGDLSISFAPGLTCSGRITSYMQNKNDPSTRKFSIWINDGEEN-QFLRKDGIICLCDHEIGTHYYRSFNDGLQTWFNDRKKFGLRSLNSNELLQTEEGLAALHTLMS--ANLKYLFLPALLYYLACMADKMTFEQLYNHIEKYIEIPEERW 341          
BLAST of mRNA_P-littoralis_Contig148.131.1 vs. uniprot
Match: UPI0010696511 (uncharacterized protein KIAA0895-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI0010696511)

HSP 1 Score: 114 bits (286), Expect = 4.630e-26
Identity = 74/210 (35.24%), Postives = 111/210 (52.86%), Query Frame = 1
Query:  103 RPIQLVRTELMSIATGILDRVAGGWGCVEELVQETRGGKIDRQQAEEFIEEYLRHHNIPGKLQIRWVKSLNSGGKLQEYG---RRDKPTARRLRLWISSSFAGVQFSRSMI-AFADHEICTHAVRAINDHAQVWVNQRGRYGLRSGGRERL-STEEGLAALNSLLCYPSQTRHMWSAAMLYYCAVKGNDMKFGELHKHLIKYVRCPAKRY 717
            R    V  E ++ A  ILD V   +   +  + E  G +I + +A +++  YL+   + G L+I W   ++  G++   G     +KP  RR RLW+ ++   V   +  I   ADHEI TH +R +ND  Q W + R  +GLRS   + L +TEEGLAA+N+LL    + R +W  A LYY A     M F EL  HL+ Y+R P +R+
Sbjct:   58 RKTHKVSLEFLTEAKRILDIVNEKYHSGDTYLDEVFGPQISQDEATKYLIHYLQSEGLEGALKIIWSSDIDCCGRIIWTGPCAHLNKPEKRRYRLWLKNTPENVYLRQQGIKGLADHEIGTHYLRTLNDGFQPWFSNRRLFGLRSLNSKHLRTTEEGLAAINTLL--QLKCRLLWWPAFLYYTACMSIQMSFKELFDHLVLYIRDPDQRW 265          
BLAST of mRNA_P-littoralis_Contig148.131.1 vs. uniprot
Match: A0A3M7P575_BRAPC (Uncharacterized protein n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7P575_BRAPC)

HSP 1 Score: 115 bits (287), Expect = 7.430e-26
Identity = 76/233 (32.62%), Postives = 121/233 (51.93%), Query Frame = 1
Query:   31 FLDSGTVPVLSFKASPQRVQASLVRPIQLVRTELMSIATGILDRVAGGWGCVEELVQETRGGKIDRQQAEEFIEEYLRHHNIPGKLQIRWVKSLNSGGKLQEYG-RRDKPTARRLRLWISSSFAGVQFSRS--MIAFADHEICTHAVRAINDHAQVWVNQRGRYGLR-SGGRERLSTEEGLAALNSLLCYPSQTRHMWSAAMLYYCAVKGNDMKFGELHKHLIKYVRCPAKRY 717
            F+D    PVL FKA  + +Q  L +  +    E    A  ILD V   +  +    +   G KI   +  + I +YL  + I G L I +   L   G++  Y   ++ P+ R+  +WI+      QF R   +I+  DHEI TH  R+ ND  Q+W N+R ++GLR +   + L TEEGLAALN+L+   +  ++++  A+LYY A   + M F +L+ H+  Y+  P +R+
Sbjct:  119 FIDHKIPPVLKFKADERSLQNILSKHSK-TNYEHFFKAKNILDTVKLKYPNLINYYEANFGQKITSIKCVDLIGKYLSENKISGDLTISFAPGLTCSGRITSYMVNKNDPSTRKFSIWINDGEEN-QFLRKDGIISLCDHEIGTHYFRSYNDGLQIWFNERKKFGLRPTNSTDLLQTEEGLAALNTLV--NANLKYLFLPALLYYMACMADRMTFEQLYNHMENYIEIPEERW 347          
BLAST of mRNA_P-littoralis_Contig148.131.1 vs. uniprot
Match: A0A0G4FMG6_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FMG6_VITBC)

HSP 1 Score: 92.4 bits (228), Expect = 9.610e-18
Identity = 73/237 (30.80%), Postives = 113/237 (47.68%), Query Frame = 1
Query:   22 MQGFLDSGTV--PVLSFKASPQRVQASLVRP-IQLVRTELMSIATGILDRVAGGWGCVEELVQETRGGKIDR-QQAEEFIEEYLRHHNIPGKLQIRWVKSLNSGGKLQEYGRRDKPTARRLRLWISSSFAGVQFSRSMIA-FADHEICTHAVRAINDHAQVWVNQRGRYGLRSGGRERLSTEEGLAALNSLLCYPSQTRHMWSAAMLYYCAVKGNDMKFGELHKHLIKYVRCPAKRY 717
            M  F D G V  P L +  S + V     +  ++ V   L  IA  ILD+V G +G     +    G +  + +Q  E + +Y+    +  ++++   KSL S   + +    D        L++ ++      ++ M+    DHEI TH +R +N+  Q W   R +Y LR+     L+TEEGLAALNSLL  P     +WS A+ YY   K  ++ F EL   L KY+  P KR+
Sbjct:  146 MSAFFDGGCVNSPTLEYARSTKAVGRDFQKHRVKSVDPFLYDIAVRILDQVKGTYGNTRAYLSALYGEEQAKPEQMREQVIQYIAALALKTRVKVVLAKSLLSVANIFKASPEDP-----FILYLQNA----PLAKGMVLPVCDHEIGTHLLRMMNEERQCWHRNRHKYDLRN----HLTTEEGLAALNSLLSLPILL--LWSPALRYYATAKATELGFAELFHDLEKYLEDPQKRF 367          
BLAST of mRNA_P-littoralis_Contig148.131.1 vs. uniprot
Match: A0A5A9PSE7_9TELE (Uncharacterized protein n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PSE7_9TELE)

HSP 1 Score: 80.5 bits (197), Expect = 9.760e-14
Identity = 60/197 (30.46%), Postives = 96/197 (48.73%), Query Frame = 1
Query:  133 MSIATGILDRVAGGWGCVEELVQETRGGKIDRQQAEEFIEEYLRHHNIPGKLQIRWVKSLNSGGKLQEYGRRDKPTARRLRLWISSSFAGVQFSRSMIAFADHEICTHAVRAINDHAQVWVNQRGR--YGLRSGGRERLSTEEGLAALNSLLCYPSQTRHMWSAAMLYYCAVKGNDMKFGELHKHLIKYVRCPAKRY 717
            +S A GI++ V   +G  E+  + T G  + + Q      +YL      G++ +     L S   +     R +PT     L I+ S A   +   M+    HEI TH +R +N+  Q W    GR  +GL+        TEEGLA+L+S+L    +   +W AA+LYY      +M FG+L +H+ ++V+ PA R+
Sbjct:  244 LSQAVGIMECVLRKYGTYEDFEEVTGGNLLPKSQVWAATRKYLLKEGCVGEVVVCLSDELLSQAVMMV--ERCRPT-----LTINLSGARQHWLEGMLR---HEIGTHYLRGVNNGMQPWATSVGRKQFGLKPAN----PTEEGLASLHSVLL--RKQPFLWRAALLYYTVYHATNMSFGQLFRHIARFVQDPAVRW 424          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7S3UVZ6_HETAK1.480e-5541.91Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI001E1D33F54.020e-3433.61uncharacterized protein KIAA0895-like isoform X2 n... [more]
UPI001E1DACFF5.380e-3333.61uncharacterized protein LOC123552187 isoform X1 n=... [more]
A0A814A4L6_9BILA1.180e-2732.62Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
UPI00106965114.630e-2635.24uncharacterized protein KIAA0895-like n=1 Tax=Dend... [more]
A0A3M7P575_BRAPC7.430e-2632.62Uncharacterized protein n=1 Tax=Brachionus plicati... [more]
A0A0G4FMG6_VITBC9.610e-1830.80Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A5A9PSE7_9TELE9.760e-1430.46Uncharacterized protein n=1 Tax=Triplophysa tibeta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:462961..464029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog10224.XP_006813054.1
PFAMsDUF1704
Model size729
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.6e-31
EggNOG OGs28I6C@1|root,2QQGI@2759|Eukaryota,38MI9@33154|Opisthokonta,3BEES@33208|Metazoa,3CUQ4@33213|Bilateria
DescriptionDUF1704
Cds size708
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789701.5972214-UTR-P-littoralis_Contig148:462960..4629811680789701.5972214-UTR-P-littoralis_Contig148:462960..462981Pylaiella littoralis U1_48UTRP-littoralis_Contig148 462961..462981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789701.6082747-CDS-P-littoralis_Contig148:462981..4634461680789701.6082747-CDS-P-littoralis_Contig148:462981..463446Pylaiella littoralis U1_48CDSP-littoralis_Contig148 462982..463446 +
1680789701.6171682-CDS-P-littoralis_Contig148:463786..4640291680789701.6171682-CDS-P-littoralis_Contig148:463786..464029Pylaiella littoralis U1_48CDSP-littoralis_Contig148 463787..464029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.131.1prot_P-littoralis_Contig148.131.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 462982..464029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.131.1

>prot_P-littoralis_Contig148.131.1 ID=prot_P-littoralis_Contig148.131.1|Name=mRNA_P-littoralis_Contig148.131.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=236bp
MQGFLDSGTVPVLSFKASPQRVQASLVRPIQLVRTELMSIATGILDRVAG
GWGCVEELVQETRGGKIDRQQAEEFIEEYLRHHNIPGKLQIRWVKSLNSG
GKLQEYGRRDKPTARRLRLWISSSFAGVQFSRSMIAFADHEICTHAVRAI
NDHAQVWVNQRGRYGLRSGGRERLSTEEGLAALNSLLCYPSQTRHMWSAA
MLYYCAVKGNDMKFGELHKHLIKYVRCPAKRYWCA*
back to top

mRNA from alignment at P-littoralis_Contig148:462961..464029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.131.1 ID=mRNA_P-littoralis_Contig148.131.1|Name=mRNA_P-littoralis_Contig148.131.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1069bp|location=Sequence derived from alignment at P-littoralis_Contig148:462961..464029+ (Pylaiella littoralis U1_48)
CCGCGAGATGCCGATATTCAGATGCAAGGATTTTTGGACAGTGGGACCGT TCCTGTCCTGTCGTTCAAAGCTAGCCCCCAGAGGGTTCAAGCTTCTTTGG TTCGACCAATACAACTTGTGCGGACAGAGCTGATGAGTATTGCCACGGGT ATACTTGATCGTGTCGCAGGGGGGTGGGGTTGTGTCGAAGAGCTGGTTCA AGAAACCAGAGGAGGCAAAATCGACCGCCAGCAAGCTGAAGAGTTCATCG AGGAGTATCTAAGACACCATAACATTCCCGGAAAGCTTCAAATTCGATGG GTTAAGAGCCTAAACAGTGGCGGAAAACTTCAGGAGTACGGGCGGCGAGA TAAGCCAACGGCACGGCGGCTAAGGCTATGGATTAGCAGTAGCTTCGCTG GTGTGCAATTTTCGAGGAGCATGATCGCATTCGCCGATCACGAAATCTGT ACGCACGCGGTTCGCGCGATCAATGACCACGCGCAGGTGCCGTAGACCCT ACCATACATACGTACGCACATTTATCATTAGGATCAACTGTTGTATGCAA AAGCTCGACATGTATATTTCTCCATGAAATATCCCGTCTACAGATACTTC TGCACGCCCTACAGTAGTGGAGTGGATAAGTCTACTAAACCAACACACCG TTCATGATTTATCCTCCGACCGTACGACACTTCCATGCGCTCCGTGTAGA CGTTTCCCGCTGACGGCGTCTCGCCGCCAATGTCGGGTGTTGGGTGGTGC TGGTAATCTCATTTATCTTATGTACTGAACTTGATTATCTCGACCGTCCA AACATCCTGAAAATTTCACGGCAAAGGTGTGGGTGAATCAACGCGGTCGA TATGGACTGCGCTCGGGGGGGCGGGAGCGTCTAAGCACCGAGGAAGGGCT GGCAGCTCTAAATTCATTGCTTTGTTACCCGAGTCAAACGCGACACATGT GGAGTGCGGCCATGCTGTACTATTGCGCGGTGAAGGGAAACGACATGAAG TTTGGCGAGCTGCACAAGCATCTCATCAAATATGTGCGGTGCCCTGCAAA GCGATACTGGTGCGCGTAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig148:462961..464029+

>mRNA_P-littoralis_Contig148.131.1 ID=mRNA_P-littoralis_Contig148.131.1|Name=mRNA_P-littoralis_Contig148.131.1|organism=Pylaiella littoralis U1_48|type=CDS|length=708bp|location=Sequence derived from alignment at P-littoralis_Contig148:462961..464029+ (Pylaiella littoralis U1_48)
ATGCAAGGATTTTTGGACAGTGGGACCGTTCCTGTCCTGTCGTTCAAAGC
TAGCCCCCAGAGGGTTCAAGCTTCTTTGGTTCGACCAATACAACTTGTGC
GGACAGAGCTGATGAGTATTGCCACGGGTATACTTGATCGTGTCGCAGGG
GGGTGGGGTTGTGTCGAAGAGCTGGTTCAAGAAACCAGAGGAGGCAAAAT
CGACCGCCAGCAAGCTGAAGAGTTCATCGAGGAGTATCTAAGACACCATA
ACATTCCCGGAAAGCTTCAAATTCGATGGGTTAAGAGCCTAAACAGTGGC
GGAAAACTTCAGGAGTACGGGCGGCGAGATAAGCCAACGGCACGGCGGCT
AAGGCTATGGATTAGCAGTAGCTTCGCTGGTGTGCAATTTTCGAGGAGCA
TGATCGCATTCGCCGATCACGAAATCTGTACGCACGCGGTTCGCGCGATC
AATGACCACGCGCAGGTGTGGGTGAATCAACGCGGTCGATATGGACTGCG
CTCGGGGGGGCGGGAGCGTCTAAGCACCGAGGAAGGGCTGGCAGCTCTAA
ATTCATTGCTTTGTTACCCGAGTCAAACGCGACACATGTGGAGTGCGGCC
ATGCTGTACTATTGCGCGGTGAAGGGAAACGACATGAAGTTTGGCGAGCT
GCACAAGCATCTCATCAAATATGTGCGGTGCCCTGCAAAGCGATACTGGT
GCGCGTAA
back to top