mRNA_P-littoralis_Contig148.99.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.99.1
Unique NamemRNA_P-littoralis_Contig148.99.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig148.99.1 vs. uniprot
Match: D7G7U7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U7_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.730e-42
Identity = 153/180 (85.00%), Postives = 160/180 (88.89%), Query Frame = 1 
Query:    1 MPFSLTENLPFLALPVALITLKITYDVLPLVAFLALVGVAVGCYMFYAGNKSPAAQRTAKKAEATADSLIQELTREEDRAKAEAAKKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEADSKPRSXXXXXXXXXXXXXXXXXXXXXPVXXXXXXXXXX----FLLRMADLERAR 528
            MPFSLTENLPFLALP+ALITLK+TYDVLP +AFLALV VAVGCYMFYAG  SPAAQRTAKKAEATADSLI+ELTREEDRAK EAA+KQ    XXXXXXXXXXXXXXXXXXXXXXXXX     QEA+SKPR+XXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXX    FLLRMADLERAR
Sbjct:    1 MPFSLTENLPFLALPLALITLKVTYDVLPFMAFLALVAVAVGCYMFYAGKSSPAAQRTAKKAEATADSLIRELTREEDRAKEEAARKQAAKDXXXXXXXXXXXXXXXXXXXXXXXXXKALAQQEAESKPRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLLRMADLERAR 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7U7_ECTSI1.730e-4285.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:382418..388475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size531
Hectar predicted targeting categorysignal anchor
Exons6
Ec32 ortholog descriptionNeurotransmitter-gated ion-channel transmembrane domain
Ec32 orthologEc-06_000250.1
Cds size531
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.99.1prot_P-littoralis_Contig148.99.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 382418..388475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789700.466932-CDS-P-littoralis_Contig148:382417..3824831680789700.466932-CDS-P-littoralis_Contig148:382417..382483Pylaiella littoralis U1_48CDSP-littoralis_Contig148 382418..382483 +
1680789700.479307-CDS-P-littoralis_Contig148:382855..3829421680789700.479307-CDS-P-littoralis_Contig148:382855..382942Pylaiella littoralis U1_48CDSP-littoralis_Contig148 382856..382942 +
1680789700.4875636-CDS-P-littoralis_Contig148:386039..3861221680789700.4875636-CDS-P-littoralis_Contig148:386039..386122Pylaiella littoralis U1_48CDSP-littoralis_Contig148 386040..386122 +
1680789700.4981146-CDS-P-littoralis_Contig148:386974..3870441680789700.4981146-CDS-P-littoralis_Contig148:386974..387044Pylaiella littoralis U1_48CDSP-littoralis_Contig148 386975..387044 +
1680789700.5102758-CDS-P-littoralis_Contig148:387423..3875761680789700.5102758-CDS-P-littoralis_Contig148:387423..387576Pylaiella littoralis U1_48CDSP-littoralis_Contig148 387424..387576 +
1680789700.5199022-CDS-P-littoralis_Contig148:388403..3884751680789700.5199022-CDS-P-littoralis_Contig148:388403..388475Pylaiella littoralis U1_48CDSP-littoralis_Contig148 388404..388475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.99.1

>prot_P-littoralis_Contig148.99.1 ID=prot_P-littoralis_Contig148.99.1|Name=mRNA_P-littoralis_Contig148.99.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MPFSLTENLPFLALPVALITLKITYDVLPLVAFLALVGVAVGCYMFYAGN
KSPAAQRTAKKAEATADSLIQELTREEDRAKAEAAKKQAAKDKKAAAKAK
QEAARKAAAAAKEAAAAKALAQQEADSKPRSAAEPPQSASKSKKQSKKSK
KAPVEEEDSDDDDDFLLRMADLERAR*
back to top

mRNA from alignment at P-littoralis_Contig148:382418..388475+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.99.1 ID=mRNA_P-littoralis_Contig148.99.1|Name=mRNA_P-littoralis_Contig148.99.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6058bp|location=Sequence derived from alignment at P-littoralis_Contig148:382418..388475+ (Pylaiella littoralis U1_48)
ATGCCGTTCTCCCTCACAGAGAACCTTCCCTTCCTTGCCCTGCCTGTGGC
TTTGATCACCCTCAAGGTAGGCTCACTGCTTTTGGCCAAACACCACAAAC
GGAGGTTTGGGGCGGACGGATACTCAGTCACACATTGGTTGTTGTCGTGT
AGCGCCTGAGCCGCGTGTTAACTGCTGATAGGCTCTCGTCAACCCTATGA
TGGTGTTATCCCGATTTGTTATACCACGGATGGTGATCTATGTTGGACGT
GTGAGGGGAAATGTAGAAAGCGAGAGCTTACGGCGAAGCGCGCTCATCAC
GTTTACCTGTACTTTGTTCCACAGCCCGAACATCAAATGTACTTGTAGGG
ATGTGTTACGCCCTCTGGAGCACTTCCCGTCATGCCCCTCTCTGACGGTT
ATGCAATGATGGCCCAATTCCTTCCTCCGCCGGTGCAGATCACGTACGAT
GTGCTTCCCCTTGTGGCATTCTTAGCGCTCGTGGGAGTCGCCGTAGGATG
CTACATGTTCTACGCAGGAAACAAGGTGGGTTCTTGTTGGTTTTCGTCTC
GTCGGCGCTCTCCGTGGAAACGCACAAAGTTTGCTCGTCTTTCTTCCTTC
CAGAACGCCCAAAAAGTGACACACCACATCTGTAACACAAGCACGACACA
GCAATACAGAGTGCTGTGGTCCTATCTCATGACTGGTGCACCACCTCGTA
TGTGAGCACGAAGTACAACAAGTGTATGATACAATACCTTCGCACGAAAT
TAAAGAAATCCACACACCGCCAGAGGAACAATCAGCGCTATTTATTAAAC
GAGAGCAAGTTGCATGTAGCAGTAATTCATATCATACGAACAGAAGAAGA
CAACGTGAGCGAGGTTCATCGCTTTTTCCGCCAACCAGGGTTTGATTCGA
CATTTCTACACCCCGTGTACCTGGACTTTTGTATTGTACTCCTGAACGTG
CTACACGCATCGGCGGCGAAAAACCCTCCTAACTCCTTACTACCCGTATG
TGGCACATGATAACACACCAGGTGATAGCATTTTGGAGTTTGAAAATATT
ATCACCGGGTGTGGTATCCTGTGGGGGGTGTGTTATCTTGTGTACCCCGG
TTGATAAAGTGCAGCTCGCAAGGGCCCCTAAGGGGGTGTTATGAAACAGG
GGGTGTGATAGCGCGTCCGAACACCCACAGCGTGTGTTTGGGGGTGTGAT
AATGAGGGGGGGTGAAAGCACGTCCGCACAGCCACAGCGTGTGCCATGGG
GTGTGATAAATGAGGAGGTGTGATACACTGCTTGTAGAGGTGAACCGCTG
CTGCCGCACACTTTAAAGGGTGTGGTATTGCGGAGGCGTGATAGCCTTGC
CTGCACGTACATGTGCAGTGTAGGGACGTACCTAAAGGGGCGTGAATTGC
GGCTGCATTCTGCTCTGCCTGCACGTTCATGTTGTTGGGGGTCTCCATGC
GGGGTGTTTTCCCGCACACAGCTGCCGTGGTTGTGTGTGTGATTGCGCAG
GGCAGGTGCTGTCACCCCGGTGATGAAAAAAAGAAACAAAAAGGAGGGGC
CCCGTGACCATATGCGGCGTAACTAAAAATATCACCGGGGTGTGTTATCT
GATGTACCCCCGGTGATAAATCGATGGTTTGTCAGAAGTGCCCAAAACTA
CCACCGGGGTGTCGTATTCTGTGGGGGGTGTGCTTTCTCATGTAGGTGTG
TTATCTTGTGTCATATACGGTAACTTTCTGGTTGGTTGTTAGTACAGCAG
CACCCAATTACAGCAGTCATCGTGCGGTAGCTGTAGTATACTCACAGCAG
CAGCATTCTAATAGATAACCCGCTGGGCTGTGTGTGTTGTGTTGTCATCC
CTTTCATTGGACGCCACTCTACACATTTCGGGTAGGTAGACGCTCCAACC
GGGGTCACACAGGGGGAAGTCAACACAGGAGTTTTTTTTTTCTCCACTTC
CCTCCGCGGTGCTTGCCTTGTTTGGTCGAGCTTTTATCGCGAGAAAGGGG
ACAGCAATCCCTTTCCCTCGTCGATGGTACGATCGAATTTTGTTTACTCA
CGAATTGATCGCTTTCCACTTTCACGTGCACTGCTGTGAGAAGAAAACCC
AGATCGTGTTACTGCACTGGGATTCGAAGTCACGCGTGAGGGTGGGGCCT
ACGTAATTTTTTGGACTCGAACGTCGAACATCGAACAAGCGGCGAAATCA
TGTGATTGGCCGTGAAAATAAAATAATACTCCGAGTACAAAATATGTTAG
GGTGTTCGAGTTTTTCTACGTCGGATCTTCCAGGGGCGATTCACGCTAAA
ACTCTAACATCTTTCGCAAAAACTCGAAAACCTAACACCGAACCTACAGT
CCTGTGGGCCATTGACGGAATAAATTGGTAACAATGGAAGAAGACCCGCG
TCTATCGCTCGCTCTCACATCACGACAAGAAATAGAGGGCGACCGGGCGA
CCGAGAGAGAGACGACCGCAGAGCATAGCCGCAAAACAAGTGTCTTTGCC
GAGCGACAGCGAGGTTTCGACTGATCCTAGGGCCCCGCGTGCGCAAGCGG
GGCCAGGTGAAACGCAATCACACGGGCGTGGCTTCCTGTCGCAACCACAC
AGCAGCAGCAGCAGCAGCTGCGTCATACCGATATGACAGCCCGGTCTATT
GGGGAGCACTTGCGTGTGTGTGTGCGTGTGGGATTTTTTTACACGCCTTT
TCCGAAATCACACAGGACCCAAAAAGTCAAACATCGAACTATCCGCTTGT
TCGATGTTCGATGTTCGAGTCCACGAAAATTACGTAGGTCCCACCCTGAA
TGTCAGAAGGTTGCGTGGATAACCAACTGAACCACCGGGGCGACTGGGTT
ACGGTCCTCAAGAGGAACATAACAGCAGCTGTTACTGCACTAGTGGCACG
CTCTTTCGTCCACCGCAGCAAGCAGATAATACCTACAGGTATTAGACAGT
AGTGTTACATGCGTTAGTGTTACTACTGCGATAGTGTTACTACTGCGTTA
CTGCCTGTAGAGCTATCTGCCGCGTACAGCAGTCACCCGACAAGAAGTAG
GATGTGGGAACGAGGGAACACGCCTTCCTGCTTTGGACCAACCAGCGGCA
ACGGGTAGTAGCAATCAACAGCGTTCACCGGCTTCACCAGGCCGTGAGGG
GAAAGCCTGTGAAGTGATTCCATAGGTTTCATGGCGTTCGTTGTTGACCC
TTGAATCCACCGGTAACCCCGAACATGGAATGACTGCTTGCGATACTGCT
GCGAACACTTTCTGGTACTTTTCCTATCGTTTCATACGCTGTCAGACTGC
TACTAAACAGAGTTACCGACCCCTGTACAAACACACATCACACACACGCA
CACCTACACACACACACACACACGGCTGCGCCCATGATATGGTGAATCTA
CCAGCACCGTTTCAGTCCTGTGTACAACGCGTGACCTTTTCCATCCAAAT
GAATGAGCGGGGCGACTCCTTCGCGAATAGTAGTCCGTGTTCCTGTGGCA
CTTGACTGCGTGGAATGGCTGGGTGCCTGTTACGGTAGAAGTAACCTATC
ACTCGGCTGTGCTTGCGGCGCCTTAACCGTCCACCCTGCTGTGTGTGGTT
TCCTACGGTGCGGCGGAAGCAGAGCCCGGCGGCGCAGAGGACGGCCAAGA
AGGCCGAGGCCACGGCGGACAGTCTGATCCAAGAGCTCACCCGGGAGGAA
GACAGGTGAGCATGGTGTAGTGTGGAGGACAGAGTCAGGTTTGGGGTCGA
GACGGAGGGCAATTCGAATCAACTCCCACGTCTGTGGACGTCGGGCTGTC
GGGTGCGCAAGTCGATGAGCTGCCCGAGGTCGTTATTCGTCGTTCTTCGC
GGTGTATTTTTCGGGGTATCCCACCGGCGGCTATCGTCACCCAGAGCAAC
TGAGGGTTACACTCGAGCGCCGGGCTAAGGCGAAAGAGCGAACTAGTCTT
TAAACGTCTCCTGGACAAACCGCTGGGTCCGACACTCGCACAACTCGACT
TCAAAGATTCCATCCGGGGTGACCCGCCGGCTACGTCGAGCCACCGACGG
TTACACTCGAGCCTGCTGGGGTGCGCGAAAGCTGTCGACGCACGTCCGCT
CGTATGATACAATCCGATCAAAAATGCGTTGTTGATCACCTGTCCGGCTT
GTTTGCTAGCGTTGGGATTGGTGTCTCGCACAAATCAAGGCGTGTGGGCG
AATGCCGCCATCGCTACGCCTGAGGAGGTAGGTTTCCGGTCGGTGGGCGA
TCACAGACGAGGCCTGTAGACTTTTTCCACAATTCGCGTTGCGGCGACAC
ATGCGCTGCCTTCACTGGTTCTGGTCTGCAGCAGCTTCTGTGCTTGAGTT
GGCCATTGATATGTGTGGGATCATGGTTGACGGCAGTTTGCTTTCACCTA
ATTGGGATGTCCGATGCCACTGAGGTTTGTTTTTGGTGATACATGGTCTT
GCTGTGTGTGCAGCGCAAGGCAAGATTCCGCGGTGATGCTTGCGGCATGC
AACTCACCATCCCTTTTCTGGTGTTTTGGTGGTTGATCGTGTTTGGTGCG
CGCGCAGGGCAAAAGCGGAGGCAGCGAAGAAGCAGGCTGCCAAGGACAAG
AAGGCGGCGGCAAAGGCGAAGCAGGAGGTTCGTTGCTTTTTGTTTCCGTC
GGCGCTCGTACAGACGTGGAAGGCACGTCCTCACTGCTGAGATGAAAACT
CGTTTGATCTGGTTGATCGCGTCCTATCCGCCGGCACGGTATGGGGAAAG
TTGTTGATGCTTTAGCTGTCGTGGATGTGACGTGATAAGACTTATCTACT
CTTCCGGCATCAATGTTGCATGTTATGTGAGCGGCCTGCAGTGTGAAAAA
GTTCTGCAGACGAGTTCTTGTCTTTTTTTCATTGTTCTCTCTCGCTTGCT
CGCCATGAAGGACACCCTCAACTTTTGAAGAATGCCCTGTATTTATTTTG
TTCAATATAAAATGATGGGTTTGTTCATCGTGTACCCTGAATCGCTTGCC
ATGAAGGCTGCCCGCAAGGCTGCGGCAGCCGCCAAGGAGGCGGCTGCTGC
CAAGGCGCTTGCACAGCAGGAGGCGGATAGCAAGCCCCGCTCAGCCGCGG
AGCCGCCTCAGTCTGCCAGCAAGTCGAAGAAACAATCCAAGAAATCCAAG
AAGGCACCGGTAAGATGTATGTTGTACGATACGTAAATGGCGCTTGGCAC
TGTTTGGCTCGCTTGCTCAACGATAGCCATTAGCAGCACAGCAGTCGGGC
GACCGCGAACGAGGGAAAGGATACTACCGAGAGGGGCCCGACTATCGCTG
AAATGAGTTGTATGGAGAAGTGAGGTCGTGCGGACGTTTTGTTGTTCGGC
ATTAGAAGCAGCAGCAGGCGCGACTTGAGCCTGTTGAGATTTTCCATTCT
TGCGTCCATAAGCACACAGCACAACATATGATATGGCATTGGGTCAGCAC
CTGTCGGCTGTAAAGACCTGTCTACCAGGCTGACGTGTCTTGCAGTCAAC
CTTCTTCTTAATTTGAATTCGATGAAAATTGTTCGGGAGCTCTGCGTCCA
TGTATCGATCGGGTGCAGTTCACGAGGTGTACACCCGTCGACGTTAGTTT
CACGTTGCACGCGAGGGGCCCATTCTGCTTATTCCCATGATATTTGCGTC
TTCAAATACCGTAGATTCCTGCGGTAGTACGTAGTCTAAGTGCCAGGCGT
ATTTAATATTCCATCCGAGAGCTGATTTATCCTATCACTTCCCCCTTCCT
CCTGCCTTGCCCCGGCGTGTGCTGTTCTCCCGCTCACTGCTGCTGCTGCT
ATATACGATCGTTGTCGATGATGGCGGATGACCCTGGTTCGTTGACCGTA
TGGACTGGACCGGACCGGGCGGGTGTATGGATGCATTGGATGGATGGATA
AATTGGATGCGATTGGCTGTTCCCTTGGATGGATGATGGATGTACTTGAT
GGGTTGGTCTACCGGTGCGGTTGTCATCACAATCAGGTTGAAGAGGAGGA
CTCGGACGATGACGATGATTTCCTGCTGCGCATGGCGGACCTGGAGCGGG
CGAGGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig148:382418..388475+

>mRNA_P-littoralis_Contig148.99.1 ID=mRNA_P-littoralis_Contig148.99.1|Name=mRNA_P-littoralis_Contig148.99.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig148:382418..388475+ (Pylaiella littoralis U1_48)
ATGCCGTTCTCCCTCACAGAGAACCTTCCCTTCCTTGCCCTGCCTGTGGC
TTTGATCACCCTCAAGATCACGTACGATGTGCTTCCCCTTGTGGCATTCT
TAGCGCTCGTGGGAGTCGCCGTAGGATGCTACATGTTCTACGCAGGAAAC
AAGAGCCCGGCGGCGCAGAGGACGGCCAAGAAGGCCGAGGCCACGGCGGA
CAGTCTGATCCAAGAGCTCACCCGGGAGGAAGACAGGGCAAAAGCGGAGG
CAGCGAAGAAGCAGGCTGCCAAGGACAAGAAGGCGGCGGCAAAGGCGAAG
CAGGAGGCTGCCCGCAAGGCTGCGGCAGCCGCCAAGGAGGCGGCTGCTGC
CAAGGCGCTTGCACAGCAGGAGGCGGATAGCAAGCCCCGCTCAGCCGCGG
AGCCGCCTCAGTCTGCCAGCAAGTCGAAGAAACAATCCAAGAAATCCAAG
AAGGCACCGGTTGAAGAGGAGGACTCGGACGATGACGATGATTTCCTGCT
GCGCATGGCGGACCTGGAGCGGGCGAGGTGA
back to top