prot_P-littoralis_Contig148.96.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig148.96.1
Unique Nameprot_P-littoralis_Contig148.96.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length140
Homology
BLAST of mRNA_P-littoralis_Contig148.96.1 vs. uniprot
Match: D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 4.680e-49
Identity = 84/111 (75.68%), Postives = 92/111 (82.88%), Query Frame = 0
Query:    1 MEVIAYDKQVADFEALECVRSQRQRREACEGKEEPPDGGGDSGGAQAAGEAVERYLSNMPAAHQTREAVSACWRALSEHQYFCRLTTPEKLQMINHRPRQPVAVHLMIEDC 111
            MEV+ YD+ VADFEALECVR QR+RREA   K+EPPD G  SGGA AA EA ERYLS MPAA +TREAVSACWRALSEH++FCRLTTPEKLQMINHRP Q VAVHL+ E  
Sbjct:    1 MEVVTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGS-SGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSEQA 110          
BLAST of mRNA_P-littoralis_Contig148.96.1 vs. uniprot
Match: A0A2G5BAV1_COERN (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BAV1_COERN)

HSP 1 Score: 51.6 bits (122), Expect = 1.670e-5
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0
Query:   50 EAVERYLSNMPAAHQTREAVSACWRALSEHQYFCRLTTPEKLQMINHRPRQPVAVHLMIEDCHRRFRDDELVEELIALLET-HLGSAES 137
            EA+E YL+N P + Q+ + + A  + L        LT  E +Q+INHRP+  V +HL++E+C  RF  +EL   +  +LET   G AE+
Sbjct:   48 EALE-YLNNTPCSSQSADQIIALKQQLGGLD----LTKAEIMQIINHRPKSLVELHLIVEECDERFSVEELERIVETILETLPYGEAEN 131          
BLAST of mRNA_P-littoralis_Contig148.96.1 vs. uniprot
Match: A0A068S7F6_9FUNG (DNA-directed RNA polymerase III subunit RPC9 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068S7F6_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 5.910e-5
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 0
Query:   55 YLSNMPAAHQTREAVSACWRALSEHQYFCRLTTPEKLQMINHRPRQPVAVHLMIEDCHRRFRDDEL---VEELIALL 128
            YL++ P + Q    V     A S+++    LT  EKLQ++N RP+ PV ++L+IE+C  RF +++L   ++++I LL
Sbjct:   53 YLNSSPCSTQDVSQVQNFLDAFSQYE----LTVAEKLQILNLRPKSPVDLYLLIEECEERFTEEDLDAMLQQVIELL 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.96.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7U4_ECTSI4.680e-4975.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2G5BAV1_COERN1.670e-538.20DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
A0A068S7F6_9FUNG5.910e-536.36DNA-directed RNA polymerase III subunit RPC9 n=2 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006590RNA polymerase Rpb4/RPC9, coreSMARTSM00657rpol4neu2coord: 1..131
e-value: 2.1E-4
score: 19.5
IPR005574RNA polymerase subunit Rpb4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 12..130
e-value: 3.1E-14
score: 53.3
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 11..130
e-value: 6.2E-18
score: 66.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..52
IPR038846DNA-directed RNA polymerase III subunit RPC9PANTHERPTHR15561CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEINcoord: 10..133
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 12..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:367908..370452 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.96.1mRNA_P-littoralis_Contig148.96.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig148 367815..371385 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig148.96.1 ID=prot_P-littoralis_Contig148.96.1|Name=mRNA_P-littoralis_Contig148.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MEVIAYDKQVADFEALECVRSQRQRREACEGKEEPPDGGGDSGGAQAAGE
AVERYLSNMPAAHQTREAVSACWRALSEHQYFCRLTTPEKLQMINHRPRQ
PVAVHLMIEDCHRRFRDDELVEELIALLETHLGSAESGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006590RNA_pol_Rpb4/RPC9_core
IPR005574Rpb4/RPC9
IPR038324Rpb4/RPC9_sf
IPR038846RPC9
IPR010997HRDC-like_sf