mRNA_P-littoralis_Contig148.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.96.1
Unique NamemRNA_P-littoralis_Contig148.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig148.96.1 vs. uniprot
Match: D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.250e-45
Identity = 84/111 (75.68%), Postives = 92/111 (82.88%), Query Frame = 1 
Query:   94 MEVIAYDKQVADFEALECVRSQRQRREACEGKEEPPDGGGDSGGAQAAGEAVERYLSNMPAAHQTREAVSACWRALSEHQYFCRLTTPEKLQMINHRPRQPVAVHLMIEDC 426
            MEV+ YD+ VADFEALECVR QR+RREA   K+EPPD G  SGGA AA EA ERYLS MPAA +TREAVSACWRALSEH++FCRLTTPEKLQMINHRP Q VAVHL+ E  
Sbjct:    1 MEVVTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGS-SGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSEQA 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7U4_ECTSI2.250e-4575.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:367815..371385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog10160.XP_004630615.1
Preferred nameCRCP
PFAMsRNA_pol_Rpb4
Model size1446
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001635,GO:0001653,GO:0001669,GO:0003674,GO:0003824,GO:0003899,GO:0004888,GO:0004930,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007186,GO:0007218,GO:0007568,GO:0008150,GO:0008152,GO:0008277,GO:0008528,GO:0009058,GO:0009059,GO:0009360,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0023051,GO:0023052,GO:0023056,GO:0030141,GO:0030424,GO:0030425,GO:0030880,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032502,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0036477,GO:0038023,GO:0042575,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0045745,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060089,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071944,GO:0090304,GO:0097223,GO:0097447,GO:0097458,GO:0097642,GO:0097659,GO:0097708,GO:0097747,GO:0099503,GO:0120025,GO:0120038,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons5
Evalue4.66e-09
EggNOG OGsKOG4168@1|root,KOG4168@2759|Eukaryota,3A8AJ@33154|Opisthokonta,3BU6M@33208|Metazoa,3DAMV@33213|Bilateria,48CID@7711|Chordata,499MU@7742|Vertebrata,3JGJP@40674|Mammalia,35PPZ@314146|Euarchontoglires,4Q594@9989|Rodentia
Ec32 ortholog descriptionRNA polymerase II, Rpb4
Ec32 orthologEc-06_000280.1
DescriptionDNA-directed RNA polymerase III subunit
Cds size420
COG categoryK
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.96.1prot_P-littoralis_Contig148.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 367908..370452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789700.2245328-UTR-P-littoralis_Contig148:367814..3679071680789700.2245328-UTR-P-littoralis_Contig148:367814..367907Pylaiella littoralis U1_48UTRP-littoralis_Contig148 367815..367907 +
1680789700.2948568-UTR-P-littoralis_Contig148:370452..3713851680789700.2948568-UTR-P-littoralis_Contig148:370452..371385Pylaiella littoralis U1_48UTRP-littoralis_Contig148 370453..371385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789700.2348182-CDS-P-littoralis_Contig148:367907..3679151680789700.2348182-CDS-P-littoralis_Contig148:367907..367915Pylaiella littoralis U1_48CDSP-littoralis_Contig148 367908..367915 +
1680789700.2431579-CDS-P-littoralis_Contig148:368123..3683191680789700.2431579-CDS-P-littoralis_Contig148:368123..368319Pylaiella littoralis U1_48CDSP-littoralis_Contig148 368124..368319 +
1680789700.2597806-CDS-P-littoralis_Contig148:368730..3688441680789700.2597806-CDS-P-littoralis_Contig148:368730..368844Pylaiella littoralis U1_48CDSP-littoralis_Contig148 368731..368844 +
1680789700.2707438-CDS-P-littoralis_Contig148:369808..3698831680789700.2707438-CDS-P-littoralis_Contig148:369808..369883Pylaiella littoralis U1_48CDSP-littoralis_Contig148 369809..369883 +
1680789700.2817175-CDS-P-littoralis_Contig148:370425..3704521680789700.2817175-CDS-P-littoralis_Contig148:370425..370452Pylaiella littoralis U1_48CDSP-littoralis_Contig148 370426..370452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.96.1

>prot_P-littoralis_Contig148.96.1 ID=prot_P-littoralis_Contig148.96.1|Name=mRNA_P-littoralis_Contig148.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MEVIAYDKQVADFEALECVRSQRQRREACEGKEEPPDGGGDSGGAQAAGE
AVERYLSNMPAAHQTREAVSACWRALSEHQYFCRLTTPEKLQMINHRPRQ
PVAVHLMIEDCHRRFRDDELVEELIALLETHLGSAESGG*
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mRNA from alignment at P-littoralis_Contig148:367815..371385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.96.1 ID=mRNA_P-littoralis_Contig148.96.1|Name=mRNA_P-littoralis_Contig148.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3571bp|location=Sequence derived from alignment at P-littoralis_Contig148:367815..371385+ (Pylaiella littoralis U1_48)
CGCAGCTGCTGCCGCTGCCATACAACCCGAGCTTGTATATCTCTTAACGC
TCATTGTCCTTGAACTGCAGGTCCAAGCCTCTGAGGGTCCTCAATGGAAG
TGTGAGTATCTTTTTGTCGGTGCAGGCTGGCTCTGCATACCTCAGGGCAG
CCTGATGCAAGAGCGAAAGCTTGAAAGCTTGGTACGCTCCACGATACACA
ATCTGGTTGTCCTCGAGACGCACCAACTCCATTCCAACACCGCTGTGAAA
CTCTGCTCTGCGGCGCGTCTGCTACGTACGTGATGCGGGTTGCTGATGTG
TGCTGCCAGGATCGCGTACGACAAGCAGGTTGCAGATTTTGAGGCGCTGG
AATGTGTCCGTAGCCAACGTCAACGGCGAGAAGCATGTGAGGGAAAGGAA
GAGCCCCCTGACGGGGGCGGTGACAGCGGCGGAGCTCAGGCAGCCGGGGA
AGCAGTGGAGCGATACCTGTCCAATATGCCAGCCGCACACCAGACAAGAG
AGGCGGTGAGCGATGGGATGGGAGAAAGGGAAGATGGTATGCTTGTCCGT
TACTGTGTTATGCCTCGCTGTTGCTGGCGGCTTGGTAGCTGTACGTACTT
CTATTATTGTACGAAGACTATGAAAGTGCTTCGTATGATATGCGTATCAT
ATGGTATGATCTCTTCCCTCGTGGAGTGCAAACAAAACACGAGGTGATCG
TCTCATGGTATATTGCTCTAGTATTCTTGGGTTGATCCCAGTTGGGACAA
CGTCTCGGATACGTCTTCCTGCCATGGGACCTGTCTTGCCAACAACCTGC
TACAGAATTCGCCGAACTCATCGTGGCTGTACTTGAGTGGAATCTGCGAT
GCCTTTCGGATCCCAACACACCACGTGTCTGTACGGCGGTGAACGCGCGT
CATGTCGACTTTTAAGGTCTCCGCGTGCTGGCGAGCGCTTTCGGAACACC
AGTATTTCTGCAGGCTAACCACGCCAGAAAAACTTCAGATGATCAACCAC
CGCCCGCGTCAGCCGGTAGCAGTGCACTTGGTGAGTGAGCAAGGCTGCCG
TAGCTTGTACCTTGACCACGTAGACGAAGTGCGTAGAGTCGCGTACTGCA
CAGCAGACCTGTTACAGACAGCAGTAGTCGAATTACAGGTATGATGCCGC
AACAGGTTATCTCCCGGTTGTCCGTTGTCCGCATTGTCTGCATTTCTCTC
TCCCTCCGTTCCTACTGGTGGTATCTTTCACTTTCGCGATACTGCTGCCC
TTCGCAAACCAATTGCCTCTCATCTATTCCACGTACGGGTACCGTCCTGA
GATGTGATCACATGTGTTAGACCATCACGTTATGTGATGAGGGTTGGGGC
TGATGACGTCGTGCGTGTACCCAAGTGCAAGCACGCCCGACTGTTGTTTC
ATACTCGTGTGCATAGACGGCACGGTTTCAAATACTTGCCGCGGTGAATT
TCAATATTACACAGTTCTTGCTCCAGCAACCCTGCACTTTCGTACACGTG
CCTATCTTTGGCTATCCCGCGCGGGCTGATGATCAGAGCCGGGGAAACTC
ATGAACTTCGTCTGTGTTGGTGCGTAGGTCGATACACATTTTTGGCTGTT
TCTGTTATTGTTACACCTGGTATGTGGTGTGCTGAACATTGTAGGACAGA
GGGCCGTCATATTTGGAGATGACACACGCGCAGCGCATGCTCTTCGGCAC
TAAGAACAACGAACACACGACGGCTTACTACAGCAGCTTTGTGTGCTTGT
GATGTGTTGTGGACGTTCATGTATGGGTTGTTGTGTGTTACACGGAGAGG
AAAAAGGATCCCCACAAGGAAAACTGAACTGACCGCTAGGGAAAGCGTGA
GCGCCTCCGCAACTCCAGGACGGTGTTCAGACCACTTTTACTCAGAAAAC
CTAAGACAGAGCAGTCTCGGCTTCGCCGCTCCGATGATCATTGTGACACT
GACTGCAGTGTTATTATTTCCGATATCGCTATGATACATGACAGATGATC
GAGGACTGCCATCGAAGATTCCGTGACGACGAGCTCGTGGAGGAACTCAT
TGCACTCTTGGAAACGCACGTGAGCGCTCGTTGAGAGGAAAGACACGTAG
TACGTAGTTCAAGCGTTTTCACGCGTAGATCTCTGCTCAAAGTCTCTCCG
ACCTTCTCTGTCAGTTTTCTCGAAAATCATGGTGCACCACACACGAGGTA
CCTCAGCCTTGCGTGCAGTGTGGGTTGTCCGCACGTCGTGGAAAGTTCTC
CCGGCATCAAAGTAACCCACTCTTCCGGTGCATCCCACCACGAGCTATCG
AAGTCACCACCGTGGTCTTCTGTCCGTTTCAACAGCAGCACATGACAGGA
ATATATTGCCGATCAATACCGGAAGTAGAACGCGCTGTGCTTTCTTACGT
GTCGCCGATCAGCGCAACAGCAGCAGTCAAATGTGCTATGCTGTGTTGTG
AACGATCCAACTTGACGACGAGTATGCATTGTCCTTGGAGGTAGAACAGG
ACAGATCGCTTCGTAGCTTGCCCAACTACCACTGCCGTGCTGGTGCAGAC
TCAAACCCAAATCACCGACCACCCTCACGTCCGGACCTGCTGCCACCGTC
GTTGTTTCCAGCTGGGTTCTGCAGAGAGCGGCGGGTGACACAGCAGTCTT
GGGCGACGCCAGGGTCGGCCACCTGCGTGGTGCAGCTTCACTGGCCTGGT
GGAAACTGCGTGCCACTCCTTGCCGATGCCGCTGCTGTCTGTCCCCGAAA
AGTGAAAAGCAGCCGCTACTTTGCTACTCTGGGTATTTTTTGCGTGTGTC
TGCTTTTCGAGCAACGACATCAACGTGTAGGCGACTTTCATGTTGTGTGC
ATCTGAGGGTCGGTGTTGCATCCCGATGCAAGCAGTCGTGGCTCTATGGT
GTAATGCCGCCGGGTGCTCCCCAAGCGTGGGGCCGGGAGTGATCGGAGAA
GAAGCAAGACCAGAGCTAGATTGCCAGTACAAGCATACGGAGACGTTCGT
CTATATCTTGGCGTCGCCGTTAACAGAGTTGGCATCGTGACCGAATATCA
AACGGCGCACTAAAGGAGAAAATACCGATCCTGATTTCGTCAAGGACAGC
AAGCCAATCGACGACAACCCGGGCGTCGCCCTATCGCGACCAAAAATCCT
TGCTCAAGGAAGCAAGCGGTTCAAGTCCTGCCTGGTGTGCGGTTGCTTGG
CCTGGACTTCCTCGATAGGGAACTCTGACTTGTCGAAGTAACTCATCGTG
AGGTTGTGCCACGGTTGTTACGCTCGTTCACGTTAATACCTGGCGCTCCC
CTTGACCTAACTGGTGTATACCTGGTATGCCATGTACGTTTTGTCCTATC
GAGGGTAGAACCAGGTGAACACTTCATGGCGCTAGCAGCGTCGCGCTCAG
GGGCTATCAACGACTCCGCAGCATCGCCATTTGTGGAGCAATGGTTGGGG
CAAGTAAGGGCAGAGCAACACGGTGACCGCCTGCGGAATGAATGCAACGT
GGATACACACCGCCTAAAACGCGTCGGAGTTGTGCCGTATTGAAGAAATA
AGAGGTCCGACGAATTGTCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:367815..371385+

>mRNA_P-littoralis_Contig148.96.1 ID=mRNA_P-littoralis_Contig148.96.1|Name=mRNA_P-littoralis_Contig148.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig148:367815..371385+ (Pylaiella littoralis U1_48)
ATGGAAGTGATCGCGTACGACAAGCAGGTTGCAGATTTTGAGGCGCTGGA
ATGTGTCCGTAGCCAACGTCAACGGCGAGAAGCATGTGAGGGAAAGGAAG
AGCCCCCTGACGGGGGCGGTGACAGCGGCGGAGCTCAGGCAGCCGGGGAA
GCAGTGGAGCGATACCTGTCCAATATGCCAGCCGCACACCAGACAAGAGA
GGCGGTCTCCGCGTGCTGGCGAGCGCTTTCGGAACACCAGTATTTCTGCA
GGCTAACCACGCCAGAAAAACTTCAGATGATCAACCACCGCCCGCGTCAG
CCGGTAGCAGTGCACTTGATGATCGAGGACTGCCATCGAAGATTCCGTGA
CGACGAGCTCGTGGAGGAACTCATTGCACTCTTGGAAACGCACCTGGGTT
CTGCAGAGAGCGGCGGGTGA
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