mRNA_P-littoralis_Contig148.90.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.90.1
Unique NamemRNA_P-littoralis_Contig148.90.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig148.90.1 vs. uniprot
Match: D7G7U1_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U1_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 9.840e-124
Identity = 183/300 (61.00%), Postives = 220/300 (73.33%), Query Frame = 1 
Query:  241 IREISNTSDMKRLTRVLDHRKVNTCCRETFAVALRDGNPAVVDIWLRHGKEHRGASFLEAFRSWGNTGVVA--GGVGVRSAPFSLPLHLSCHAGSPEIVSVLLKFMAESYSSKDNKAMVNARDLNGRTALHLASWSPRVQCPGKRNDIVRNLLANGAXXXXXXXXXXXXXXXACRAADCPAVEILMTGGASPLEEDHRSHTPLETATTRRNRYLLNAVFRKQLSTRQYLRVCARIAAKSTVSRIMRRFEPVCEACRMRPAETCHAQKRNNYAAWVYKHQRWPKAGVGKWKDVRPSCVEKK 1134
            IREIS  SD++RL RVLDHRK+NT CRETFA A+RD NPA V++WL HGKEH+GA FL+AFR+WG        GG G   +P S+PLHLSCHAG+PEIVSVLL+FM ESYS  D  AMVNARDLNGRTALHL+SWSPR +CPG RN IVR LL++GA               ACRAAD  AVE                    ETAT +R+  LL+A+FRK LSTR+YL +CAR+ AK++VSRIMRRF P+C+ C++RPAE C+ QKR+++AAWV+KH RWPKAG GKW++VRPSCVEKK
Sbjct:    2 IREISKASDLQRLARVLDHRKINTSCRETFAAAVRDANPAAVEMWLHHGKEHKGAYFLDAFRAWGEAAAAGHVGGRGGNRSPPSIPLHLSCHAGAPEIVSVLLRFMTESYSCDDRIAMVNARDLNGRTALHLSSWSPRARCPGTRNAIVRELLSHGANVKAEDNHGRTALHEACRAADHFAVETXXXXXXXXXXXXXXXXXXXETATAKRHWRLLDALFRKNLSTRRYLHLCARVTAKTSVSRIMRRFVPLCDTCQVRPAEACNTQKRDDFAAWVFKHHRWPKAGEGKWREVRPSCVEKK 301
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7U1_ECTSI9.840e-12461.00Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:354155..357380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G7U1
PFAMsAnk,Ank_2,Ank_4,DUF3447,VPS9,WW
Model size1140
Max annot lvl2759|Eukaryota
KEGG koko:K20175
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.61e-124
EggNOG OGsCOG0666@1|root,KOG2319@2759|Eukaryota
Descriptionguanyl-nucleotide exchange factor activity
Cds size1140
COG categoryGM
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789699.980018-CDS-P-littoralis_Contig148:354154..3548371680789699.980018-CDS-P-littoralis_Contig148:354154..354837Pylaiella littoralis U1_48CDSP-littoralis_Contig148 354155..354837 +
1680789699.9960432-CDS-P-littoralis_Contig148:355738..3558381680789699.9960432-CDS-P-littoralis_Contig148:355738..355838Pylaiella littoralis U1_48CDSP-littoralis_Contig148 355739..355838 +
1680789700.0091968-CDS-P-littoralis_Contig148:356393..3564791680789700.0091968-CDS-P-littoralis_Contig148:356393..356479Pylaiella littoralis U1_48CDSP-littoralis_Contig148 356394..356479 +
1680789700.0257332-CDS-P-littoralis_Contig148:357109..3573801680789700.0257332-CDS-P-littoralis_Contig148:357109..357380Pylaiella littoralis U1_48CDSP-littoralis_Contig148 357110..357380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.90.1prot_P-littoralis_Contig148.90.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 354155..357380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.90.1

>prot_P-littoralis_Contig148.90.1 ID=prot_P-littoralis_Contig148.90.1|Name=mRNA_P-littoralis_Contig148.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=380bp
MPSAKPSHHRIFWQEESTSASLWEGANQAVEGAQEAEDSKKKTSSPKPGD
QKQLCVPSSSAATGHEGQNKKNKRLSPAATIREISNTSDMKRLTRVLDHR
KVNTCCRETFAVALRDGNPAVVDIWLRHGKEHRGASFLEAFRSWGNTGVV
AGGVGVRSAPFSLPLHLSCHAGSPEIVSVLLKFMAESYSSKDNKAMVNAR
DLNGRTALHLASWSPRVQCPGKRNDIVRNLLANGASVKAKDYNGRTALHV
ACRAADCPAVEILMTGGASPLEEDHRSHTPLETATTRRNRYLLNAVFRKQ
LSTRQYLRVCARIAAKSTVSRIMRRFEPVCEACRMRPAETCHAQKRNNYA
AWVYKHQRWPKAGVGKWKDVRPSCVEKKTK
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mRNA from alignment at P-littoralis_Contig148:354155..357380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.90.1 ID=mRNA_P-littoralis_Contig148.90.1|Name=mRNA_P-littoralis_Contig148.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3226bp|location=Sequence derived from alignment at P-littoralis_Contig148:354155..357380+ (Pylaiella littoralis U1_48)
ATGCCTAGTGCGAAGCCATCGCATCACCGCATCTTCTGGCAAGAAGAGAG
TACGTCCGCGTCGCTATGGGAAGGCGCGAATCAAGCGGTAGAAGGCGCAC
AAGAAGCAGAGGACAGCAAGAAGAAAACATCCTCACCTAAACCTGGCGAC
CAAAAACAGCTTTGCGTGCCGTCATCCTCAGCAGCAACAGGCCATGAGGG
CCAAAACAAGAAGAACAAGCGGCTAAGCCCCGCTGCCACAATTCGAGAGA
TATCCAACACTTCGGATATGAAGCGGCTGACTCGAGTGCTCGACCATCGC
AAAGTCAACACGTGTTGTAGGGAGACGTTTGCAGTGGCATTGCGAGATGG
GAATCCGGCCGTTGTTGACATATGGCTGCGCCACGGCAAAGAGCATCGGG
GGGCTTCTTTTTTGGAAGCCTTTCGTTCCTGGGGAAACACCGGTGTTGTT
GCTGGCGGTGTTGGCGTTCGGTCTGCTCCGTTTAGTCTTCCATTGCATCT
ATCGTGCCATGCGGGATCACCTGAGATCGTGTCGGTGCTGCTAAAATTCA
TGGCGGAGTCATACTCCAGCAAGGACAACAAGGCTATGGTGAATGCCAGA
GATCTGAATGGACGCACTGCGCTGCACCTAGCAAGCTGGTCGCCGAGAGT
TCAATGCCCGGGGAAAAGAAACGACATTGTCAGGTAGGCTTTCCATGTGT
TGCCCCCATACTCAGTCTCTCGGAGGGATATCGTCTCCCCCAAACCAAAA
ACTAATCCCCTCGTACTAATCAATTATACTATCATAAGAAGAAGAACCAA
CAGCCTCCAAATTGTCTCTTTATTTCAGATTGGTTCTTCAAGGGGGTGGT
GTGTTTCAACAGTTCTACCGAGAAATTTGACTATTCCAGGGGATGGTATG
TTTCACCAGCTCAAGTCGAGTGCATGTGCCCAAGTAACGACAATCGATGT
CGGCTGAAAGTGAAAGTACAATACCAGGACATAACACGGGTTGAGGGTAT
ACTGAGAGCGAGCCCCCTGCCCATGAAACATGCTTGTTGTACGCGATAAT
AGGTAGGAAGGTTTGCTTCGGCAAAATACCAACAAGTAATTGTAGGGCTT
TGTTGGAAGAATGTGGGTGTATCAAATGTCCCACGTATTCCCGGCGATAT
CTCGAATCAGAGGAACGAGTTCGCCTGGTGTGTTCTCAAGATATTTGTTG
AGTAGCCCTACACTCGTTATTTATCGCATACGAAGTATATCTGTAGTCTC
GTACTTATACTTGGTTATTGTTCTTAATAAAAGCTGCAGGCGCTATCCGA
CAACGTAGAGCAGCATAAACTCAAAACGAAGAGCACAAACTGGAGAAAAT
GAACACACTCATTAAAGCCAACTAGTGCAGTAGTACAACAACAACCGCAC
AAATCGCACGTGCGTAAGCATAAACTCGGGCTTTGAAGCGAAGAGCTGGC
TATCGGTACTCTCGAAGCCGTGTTGTTGATGATGTTGGCGTTACCTTGTA
TAAAACCGTTCCGACCTCTATCGAAAAGTGGTTTCACACTCAATACGCGG
ACAAAAAGCTCTTAACTTTGTTGAATCTTCGAAGGAATTTGCTGGCAAAC
GGTGCAAGTGTCAAGGCCAAAGACTACAATGGTCGGACGGCGCTTCATGT
GGCTTGCCGCGCGGCCGACTGCCCTGCCGTAGAGGTAAGTGAGAGTTGTG
GTCGACCATTACGAAATAATAGAAAGAACTTCGATTTTCGTCGTTTCTGT
TTTGATCAAAGCGGTAGAGTCGTGGGACACGTGTGGCGAAGGAGACGGGC
GGGACGGTGTGCATCACATTGCTCGCCGTTCAGTCTCTATCGCCAAGTGT
CGCACCGTATCGGGCATCTTTATACACGGGCGAGCGTTGTTAGGTGCCGG
TCGGGGGGCAGAGCGACCAAAGGGGGAGATCTAAGTTCCCTCTACGATGA
CACCACACAATTTTCGTCCTTTTTATAGCGGCCTTGGAACAAAGTTGAGC
AGATCGAAGAACCGCGCTGGAAAGGTCAGACTGGCGCTTCACGCGTGAAA
ATCCTGGAAACCATGTTGCCATATGCGCTTACCAATACCTCCGGCCGTAA
GCACGAAATAGTATAGTTTATGAAATTGTAAATTTGTAGTTGAAGACTTG
TGAATGTCGCAAACAGAGTGTGTTTGAGCAGTTCCAATTCTTGTGTAGGT
GAACAATTTTCCCCACTTCTGTTGTGCGATGTATGGCAGATTCTCATGAC
AGGCGGTGCAAGCCCTCTGGAGGAGGACCATCGCAGCCATACCCCACTTG
AGACAGCCACCACTCGGAGAAATCGGTGAGAAGAGCATATACGTACGTTG
TTGAATCCACAGCAGGCCGGCGCTACACTGCACGCATCATTCGTAGATTT
GTTCGTACTCGATACCGTTCGGAGAGTGAGGTAAAGTTCATTCGTTCATA
TTGCAAAGTATTGAAGCACAACTTTCCCATCCGAGGGAGCGGGGTTTCAT
ATCACTCAGGTCGTAAGTTCCTGTCATACACCAACTATTTTGTATTAGGA
GGGAGGGAGAATGCAACAGGAGAGGATGAGGGGGGGGGGTGTCATTGATG
TGTTGCTTGCCAGACTGTGCATCACGCCCCATGCATCCAGGTGAAACGGA
GCGGTGGTAGGGGGGGGGGGTGTCATCAAAGTAATAAACTGCGGACAAGG
CCCGGACCGTCAAGCGGTATTCATCTCCTTAAAAGCCCCGCCCCTTTATC
CGCGGCAAAGGTCCGGGCCTTAATAGGTATGTACTCCTATTATGACTGCG
ATACTCTCTTCCCCCGTGAGCCTCTTCCGAACCCCTCTCCTTCCGTATGT
CATACGAAGTTGGTTGTCAAGTCATTGCTTTATTTACTTGTCACCCATTT
TGATGTCTCCGCCACCCCATTCTACGCTTGGCACCGTCACCCCACCTCCC
GCAAGCTATCTCCTGAATGCAGTTTTTCGGAAGCAGCTCTCGACAAGACA
ATATCTTCGCGTGTGCGCAAGAATCGCCGCAAAGTCCACTGTTTCGAGAA
TCATGCGGCGGTTCGAGCCAGTGTGTGAAGCTTGTCGGATGCGGCCGGCC
GAAACTTGTCATGCCCAGAAGAGAAACAACTACGCGGCCTGGGTTTACAA
GCACCAGCGGTGGCCGAAGGCCGGGGTAGGGAAGTGGAAGGATGTGCGAC
CGTCATGCGTGGAGAAAAAGACCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:354155..357380+

>mRNA_P-littoralis_Contig148.90.1 ID=mRNA_P-littoralis_Contig148.90.1|Name=mRNA_P-littoralis_Contig148.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1140bp|location=Sequence derived from alignment at P-littoralis_Contig148:354155..357380+ (Pylaiella littoralis U1_48)
ATGCCTAGTGCGAAGCCATCGCATCACCGCATCTTCTGGCAAGAAGAGAG
TACGTCCGCGTCGCTATGGGAAGGCGCGAATCAAGCGGTAGAAGGCGCAC
AAGAAGCAGAGGACAGCAAGAAGAAAACATCCTCACCTAAACCTGGCGAC
CAAAAACAGCTTTGCGTGCCGTCATCCTCAGCAGCAACAGGCCATGAGGG
CCAAAACAAGAAGAACAAGCGGCTAAGCCCCGCTGCCACAATTCGAGAGA
TATCCAACACTTCGGATATGAAGCGGCTGACTCGAGTGCTCGACCATCGC
AAAGTCAACACGTGTTGTAGGGAGACGTTTGCAGTGGCATTGCGAGATGG
GAATCCGGCCGTTGTTGACATATGGCTGCGCCACGGCAAAGAGCATCGGG
GGGCTTCTTTTTTGGAAGCCTTTCGTTCCTGGGGAAACACCGGTGTTGTT
GCTGGCGGTGTTGGCGTTCGGTCTGCTCCGTTTAGTCTTCCATTGCATCT
ATCGTGCCATGCGGGATCACCTGAGATCGTGTCGGTGCTGCTAAAATTCA
TGGCGGAGTCATACTCCAGCAAGGACAACAAGGCTATGGTGAATGCCAGA
GATCTGAATGGACGCACTGCGCTGCACCTAGCAAGCTGGTCGCCGAGAGT
TCAATGCCCGGGGAAAAGAAACGACATTGTCAGGAATTTGCTGGCAAACG
GTGCAAGTGTCAAGGCCAAAGACTACAATGGTCGGACGGCGCTTCATGTG
GCTTGCCGCGCGGCCGACTGCCCTGCCGTAGAGATTCTCATGACAGGCGG
TGCAAGCCCTCTGGAGGAGGACCATCGCAGCCATACCCCACTTGAGACAG
CCACCACTCGGAGAAATCGCTATCTCCTGAATGCAGTTTTTCGGAAGCAG
CTCTCGACAAGACAATATCTTCGCGTGTGCGCAAGAATCGCCGCAAAGTC
CACTGTTTCGAGAATCATGCGGCGGTTCGAGCCAGTGTGTGAAGCTTGTC
GGATGCGGCCGGCCGAAACTTGTCATGCCCAGAAGAGAAACAACTACGCG
GCCTGGGTTTACAAGCACCAGCGGTGGCCGAAGGCCGGGGTAGGGAAGTG
GAAGGATGTGCGACCGTCATGCGTGGAGAAAAAGACCAAG
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