mRNA_P-littoralis_Contig148.76.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig148.76.3 vs. uniprot
Match: D7G7T5_ECTSI (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T5_ECTSI) HSP 1 Score: 185 bits (470), Expect = 4.150e-51 Identity = 88/94 (93.62%), Postives = 89/94 (94.68%), Query Frame = 2
Query: 872 RHVILPKDLAKGLPKSRVLTEQEWRALGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPTLEAEAKNAYQEELAGKMDPGTNVAPMAM 1153
RHVILPKDLAKGLPKSRVLTEQEWR LGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDP LE EAK AYQ+ELA KMDPGTNVAPMAM
Sbjct: 19 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQELADKMDPGTNVAPMAM 112
BLAST of mRNA_P-littoralis_Contig148.76.3 vs. uniprot
Match: A0A7S2BBH9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBH9_9STRA) HSP 1 Score: 142 bits (359), Expect = 6.470e-36 Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 2
Query: 872 RHVILPKDLAKGLPKSRVLTEQEWRALGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPTLEAEAKNAYQEELAGKMDPGTNVAPM 1147
RHVILPK+LAK LPK+R+L+EQEWR +GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GK+DP LE EAK+AYQ L N APM
Sbjct: 37 RHVILPKELAKNLPKARLLSEQEWRGIGVQQSRGWAHYAIHRPEPHILLFRRPLGTDPVTGKIDPALEREAKDAYQNNLE------LNQAPM 122
BLAST of mRNA_P-littoralis_Contig148.76.3 vs. uniprot
Match: A0A7S2BWV6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWV6_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.020e-33 Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 2
Query: 872 RHVILPKDLAKGLPKSRVLTEQEWRALGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPTLEAEAKNAYQEELA 1111
RHVILPK+LAK LPK+R+L EQEWR +GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GKVD LE +AK+AY LA
Sbjct: 38 RHVILPKELAKNLPKARLLGEQEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDVELERDAKDAYNASLA 117
BLAST of mRNA_P-littoralis_Contig148.76.3 vs. uniprot
Match: A0A7S3MEH0_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEH0_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.470e-33 Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 2
Query: 872 RHVILPKDLAKGLPKSRVLTEQEWRALGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPTLEAEAKNAYQEELA 1111
RHVILPKD A+ LPK+R LTE EWR +GVQQSRGW HYA H+PEPHILLF+RPLGTDPVSG+VDP LE EA+ YQ+ELA
Sbjct: 20 RHVILPKDSARNLPKNRTLTELEWRNIGVQQSRGWEHYACHKPEPHILLFRRPLGTDPVSGEVDPELEREAREKYQQELA 99
BLAST of mRNA_P-littoralis_Contig148.76.3 vs. uniprot
Match: A0A6S9ANL1_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ANL1_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.470e-33 Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 2
Query: 872 RHVILPKDLAKGLPKSRVLTEQEWRALGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPTLEAEAKNAYQEEL 1108
RHVILPKDLAK LPK+R+L+E EWR +GVQQSRGWMHYAIHRPEPHILLF+RPLGTDP SG+VDP LE EA+ Y+ +
Sbjct: 21 RHVILPKDLAKTLPKNRLLSESEWRGIGVQQSRGWMHYAIHRPEPHILLFRRPLGTDPQSGQVDPELEREAREEYKNQF 99
BLAST of mRNA_P-littoralis_Contig148.76.3 vs. uniprot
Match: A0A835YHQ2_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ2_9STRA) HSP 1 Score: 133 bits (335), Expect = 4.940e-33 Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 2
Query: 872 RHVILPKDLAKGLPKSRVLTEQEWRALGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPTLEAEAKNAYQEEL 1108
RHVILPK+LA+GLP +R+L E+EWR LGVQQSRGW+HYAIHRPEPHILLF RPLGTDP+SG+VDP E EAK Y E L
Sbjct: 19 RHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHL 97
BLAST of mRNA_P-littoralis_Contig148.76.3 vs. uniprot
Match: W7T145_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T145_9STRA) HSP 1 Score: 133 bits (334), Expect = 6.950e-33 Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 2
Query: 872 RHVILPKDLAKGLPKSRVLTEQEWRALGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPTLEAEAKNAYQEELAG 1114
RHVILPK++A+ LPK R+LTE EWR +GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GKV+ LE EAK Y E + G
Sbjct: 19 RHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNG 99
BLAST of mRNA_P-littoralis_Contig148.76.3 vs. uniprot
Match: A0A6H5L2I6_9PHAE (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2I6_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.220e-32 Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 2
Query: 872 RHVILPKDLAKGLPKSRVLTEQEWRALGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPTLEAEAKNAYQEELA 1111
RHVILPK+ AK LP+SR+LTE EWR LGVQQSRGW HYA+H PEPHILLF+RPLGT+PV+G+VDP LE EAK Y EEL+
Sbjct: 18 RHVILPKETAKILPQSRLLTEDEWRHLGVQQSRGWQHYAVHTPEPHILLFRRPLGTNPVTGRVDPELEREAKEKYAEELS 97
BLAST of mRNA_P-littoralis_Contig148.76.3 vs. uniprot
Match: A0A7S2VEK7_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEK7_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.560e-32 Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 2
Query: 872 RHVILPKDLAKGLPKSRVLTEQEWRALGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPTLEAEAKNAYQEEL 1108
RHVILPK+LAK LPKSR+LTE EWR +GVQQSRGW HYAIHRPEPHILLF+RPLGTDP SG+VDP LE A++ Y+ +
Sbjct: 37 RHVILPKELAKTLPKSRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPELERAARDEYKNQF 115
BLAST of mRNA_P-littoralis_Contig148.76.3 vs. uniprot
Match: A0A7S0UH58_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UH58_9STRA) HSP 1 Score: 131 bits (330), Expect = 5.740e-32 Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 2
Query: 872 RHVILPKDLAKGLPKSRVLTEQEWRALGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPTLEAEAKNAYQEELAGK 1117
RHVILPK+LAK LPKSR+L+E EWR +GVQQSRGW HYAIHRPEPHILLF+RPLGTDP SG+VDP +E +A++ Y+ + K
Sbjct: 51 RHVILPKELAKTLPKSRLLSESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKARDEYRSQYQRK 132 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.76.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig148.76.3 >prot_P-littoralis_Contig148.76.3 ID=prot_P-littoralis_Contig148.76.3|Name=mRNA_P-littoralis_Contig148.76.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp MVGASFGPLIQRRASPLSCERVCSCVLFSPSPVFLPRHVILPKDLAKGLPback to top mRNA from alignment at P-littoralis_Contig148:316839..321521+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig148.76.3 ID=mRNA_P-littoralis_Contig148.76.3|Name=mRNA_P-littoralis_Contig148.76.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4683bp|location=Sequence derived from alignment at P-littoralis_Contig148:316839..321521+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig148:316839..321521+ >mRNA_P-littoralis_Contig148.76.3 ID=mRNA_P-littoralis_Contig148.76.3|Name=mRNA_P-littoralis_Contig148.76.3|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig148:316839..321521+ (Pylaiella littoralis U1_48)back to top |