mRNA_P-littoralis_Contig1.54.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.54.1
Unique NamemRNA_P-littoralis_Contig1.54.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:340586..344407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFX6
Model size1732
Max annot lvl2880.D8LFX6|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.66e-05
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size1368
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789307.511021-UTR-P-littoralis_Contig1:340585..3407241680789307.511021-UTR-P-littoralis_Contig1:340585..340724Pylaiella littoralis U1_48UTRP-littoralis_Contig1 340586..340724 -
1680789307.5468075-UTR-P-littoralis_Contig1:344182..3444071680789307.5468075-UTR-P-littoralis_Contig1:344182..344407Pylaiella littoralis U1_48UTRP-littoralis_Contig1 344183..344407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789307.522606-CDS-P-littoralis_Contig1:340724..3407641680789307.522606-CDS-P-littoralis_Contig1:340724..340764Pylaiella littoralis U1_48CDSP-littoralis_Contig1 340725..340764 -
1680789307.5324154-CDS-P-littoralis_Contig1:342854..3441821680789307.5324154-CDS-P-littoralis_Contig1:342854..344182Pylaiella littoralis U1_48CDSP-littoralis_Contig1 342855..344182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.54.1prot_P-littoralis_Contig1.54.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 340725..344182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.54.1

>prot_P-littoralis_Contig1.54.1 ID=prot_P-littoralis_Contig1.54.1|Name=mRNA_P-littoralis_Contig1.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=456bp
MPSRCTHPGCPKQPTFGLNGVKKAKYCAVHAKAGMVNVLSKRCAHRGCIT
RPNYGAPGTKKPEFCVSHAKHGMVNVVNKTCSAEDCAKQPSYGNSGTKVA
EFCSRHARDGMVDVYKKNCAYRGCTVGPSYGAKGGRKREFCAHHAAVGMV
RLTGSISKTKTAASVGASAARVPSKAKVAPAAAAGRAKKSSGTAAVVAPK
ARTHDVGGAASPKRAKASVAAAAAATATATATAAAVSKAKKSGGVSTTTT
TTTVVVSKPKSKTSGGTAVPKAKSSGRTPAAIKSEKSGGAMATCPASAVR
KAKTAGGAAPSAAAPPRARAAAAAAAAAATASASAALKVTTTGCGAGNKR
SRRNSAGSVRMAIDRRTAAEDEMEAASDSSKGRGAKRARRASAVSEVASA
PAPAPAPAPASALASASAPASTPSAGPRTPSKRKWWSPINLWRSTAEKAA
AAAAY*
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mRNA from alignment at P-littoralis_Contig1:340586..344407-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.54.1 ID=mRNA_P-littoralis_Contig1.54.1|Name=mRNA_P-littoralis_Contig1.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3822bp|location=Sequence derived from alignment at P-littoralis_Contig1:340586..344407- (Pylaiella littoralis U1_48)
CACTTGTCGTCCCTGTCTGCTGTGCCTGCCTCTGGATCCACGCAGATTTG
CATCGCTTCGCGATCCCATCTGCCTTCTCTCTCTCTCTCGCAGTCGCCGT
GGAAGTCGAAGCGTGAAGATCGTGATTGCCATTAGAGAGGCAGAGAGAGA
GAAAGAGAGAGAGAAATCCTTCAAGCACCCGGCTCCTAGCCCTCCTCTCA
CCTCACGCACCAACAACCAGCGAAAATGCCGAGTAGGTGCACACATCCAG
GCTGCCCCAAGCAGCCAACGTTCGGCCTGAACGGCGTCAAGAAAGCGAAG
TACTGCGCTGTCCATGCGAAGGCCGGGATGGTGAACGTCCTCAGCAAGCG
ATGCGCCCACCGGGGCTGCATCACGCGGCCGAACTACGGTGCTCCAGGCA
CCAAGAAGCCCGAATTTTGCGTCTCCCACGCGAAGCACGGCATGGTGAAC
GTTGTCAACAAGACATGCAGCGCGGAGGACTGCGCCAAGCAGCCGTCGTA
CGGCAATAGCGGGACCAAGGTGGCTGAGTTCTGTTCCCGGCACGCCCGGG
ACGGTATGGTGGACGTCTACAAGAAGAACTGCGCGTACCGAGGCTGCACC
GTGGGCCCCAGTTACGGCGCGAAGGGAGGGCGCAAGCGCGAGTTCTGCGC
CCATCATGCCGCCGTGGGTATGGTGAGGCTCACCGGTTCTATCTCCAAGA
CCAAGACTGCCGCCAGTGTCGGTGCTTCTGCTGCTCGTGTTCCCTCGAAA
GCAAAGGTGGCTCCCGCTGCCGCCGCTGGTAGGGCAAAGAAATCCAGTGG
CACTGCTGCTGTTGTTGCCCCCAAGGCGAGGACTCACGATGTTGGCGGTG
CCGCTTCTCCTAAAAGGGCGAAGGCTTCCGTCGCTGCTGCTGCTGCTGCT
ACTGCTACTGCTACTGCTACTGCTGCCGCTGTTTCCAAGGCAAAGAAATC
CGGTGGCGTTTCTACTACTACTACTACTACCACGGTTGTTGTTTCCAAGC
CTAAGAGTAAGACATCAGGTGGTACCGCAGTTCCCAAGGCGAAGTCTTCC
GGCCGTACTCCAGCTGCCATCAAGTCGGAAAAATCCGGCGGTGCGATGGC
CACCTGTCCTGCTTCCGCTGTCCGCAAGGCAAAGACTGCCGGTGGTGCTG
CCCCCTCCGCTGCTGCTCCTCCAAGGGCGAGGGCTGCCGCTGCTGCCGCT
GCTGCCGCTGCTACCGCTTCTGCTTCTGCTGCTCTAAAGGTAACGACTAC
CGGCTGTGGGGCGGGCAACAAGCGTTCTCGAAGAAATTCAGCTGGGAGTG
TGAGGATGGCGATCGATCGCCGCACGGCTGCGGAAGACGAGATGGAGGCC
GCCTCGGACAGCTCAAAGGGTCGGGGAGCCAAGCGAGCCCGCCGTGCCTC
TGCCGTCAGCGAAGTGGCCTCGGCCCCAGCCCCAGCCCCAGCCCCGGCCC
CAGCTTCGGCCTTGGCTTCTGCTTCGGCTCCGGCTTCGACTCCTTCTGCG
GGGCCCCGCACTCCTTCGAAGCGCAAGTGGTGGTCGCCGATCAATCTTTG
GAGGTATGTAACGTCCTTGTGGTGCGTGCGTTACAAAACAGCTCGGGTTG
GTTTCCCAGGAAAGGATTACTGATCACCCCGCCTAGCGTGTCAGTCACCT
TGTAGCACTCACCATGAGGATGTCAATGCCGTTATCGCGTTGTACATACA
GCCATGCAAAACGCCCCAGCTGTTCGTAGTTTCCATGTCACGTGCCGTAG
GTGACTGTGGACACCAAACCCCGCGGACTGATTTCGAAATAATTACTCCA
TGGCAAGACGTGTTTCAGTGCCGGTAACGGTGGCCTCACTGAAGATAACC
GTCGGGACCTGTTCGGTTCCGCATATTTGATTTTCGGCACCCTCTTCATG
CCGGAGTAATCGGCCTGTAGAAATGAGCCCACGGGGCGCTGTATCCTCTG
TCACGCACAGAGGGTTTTCATCGCATCATTGCCGATGCCGAAACACGTCG
TTAGTTCTCCGAAAAAGGCATGCTTTCAACACGAAAACGATAAAAAAATA
AATAGTGGTTTATTCCGATGCCGTCGATGTCGGCACTGACGCCTTTCCTA
TCCTTGTGCCTTGGTGCACGGTCGAGCATTGGAAAATGAACGGTGTATCA
TAAACCTTCATTATTTTTTTCTCCAACACATCAATGGTGTGCTCGTGTCT
CTCCAGGCGAGGATTTGGAGTAGATTAGCAACGAACCCGAAGAAGACACA
TCTACCCTGTGTTTCTCCTGGCTGATCAGTAGGAGGTGTTGCGCTGCATG
TCACGTGCAACACGGAAGCCTATACGTACGTGTCATCGTTAATCGTGTGT
TTAAACTCCCGGAGAACGCAGGAATTATGCTCGAAGCGAAGCTTGACTTA
TACTCGAAGTGTATGTTTGATTCCAGCGAGAAGTGTATACATACCTGAAA
GACATGTTTGGTTTCCGGCAAAAATGTGCGGTCGTTCGTTAAAAATACAA
AAAACATGTTTCGAGCTATGTACGTAGCTTGCCAGGGGGGGGGGAGGGGG
GGTCTGGTTTGTGTACCGCACCCCACCACTCTTCTCCGGTAGCCTCGGTT
GTCTGGGCAACCTGAAAAATGCAGTCGACCCCTCGCCAACGGCGAGGCCC
GTTTGGGCCTCATGTGGGTCTGTGTGGGTGTGCGTATGTGCGTGAGTCGG
TGCGCTTGTGTGTTTCTTTGTGTGCGTATTGTCATCCCTTTTCTGGGACG
TCGTTGTCTACAAGTCTTGCGGTACAGCAGTACAAGCAGGGCTCACCGTA
AGGGGTAATACACAAGGGGGAAGGTCTTAACCCAGGAGTTTCTTTTACTT
TTCTTCCCCTCGCCTAGTTTATTAATTATCTAACGCAAGTGGGTTCAGCG
GTCCCTTGTCCCTATTCGACAAACCAGAAATAAGTAGTGCATACCCGACC
AATGTATACTGTACGAGCATCTGTTTAACTACACACCGCGGGTGCATTCC
AAGAACGATCCCCGGAACGATCCACTGCAACTTCGGCAGGCATCACACAT
CTTGCCCGCACGTGCGGCAATGCATTCACCCCGAGTGTAAATCTTCTATC
ATCGTATGATATAAAAGGCGATGATACTGTCCCCACAGCAGTAGGGTTGT
CATGAGTATTACACCTTGCTCTTCTAAACGATACAAAAGGCAGAAAAAGA
CAAGCACCACAGAGGATGGGTGGAGGGGAAAAACAAAAAAACAGGTGTGC
CACTTTCCTTGTTCTGTGTGACCAACTCCGGCTTGTGCACCCACTTGATT
CCGAAAGGTGTGAACCGGTGGGGCCCAGAATAAATGGTATGTTAACACAC
ACCTTACCCTGCTAAATGTTACGAACGTTATTATTCTCCCTTGTTTGATG
TTTGGATCGTCAGGCCACCGCCGGGAATGCTGTCATAAAATTGTTTTCCT
TGCACCACCGACGGTCCTTGGCCGTTCGCTGACGATTCGATCCTGTTTCG
TGCCCGATTGACGATTTTCCTTGTTTTCTTTGGTTTTTTGTAATATCTCT
CTTGCGCGCATGTGTGTGTGTGTGTGTGTGTGTGTGTATCCTTCCTCCTT
CTCCTGGTTCCCTTTCGTCAACCCTTCCATCATCGCCAAACAGGTCAACG
GCCGAAAAGGCTGCGGCGGCGGCAGCATATTAAGTTGAACACAAATATTT
ATCTGAATATTGCATGTAGCGAGATCTGGTACGAGGAGGGGAGCGAGACG
ATGAGCGATCACAGCCGCTGGAGAGTGAAGGGGGGTTGATGCGCCGCAGT
GTTTCGGGTGGACGGAAGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:340586..344407-

>mRNA_P-littoralis_Contig1.54.1 ID=mRNA_P-littoralis_Contig1.54.1|Name=mRNA_P-littoralis_Contig1.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1368bp|location=Sequence derived from alignment at P-littoralis_Contig1:340586..344407- (Pylaiella littoralis U1_48)
ATGCCGAGTAGGTGCACACATCCAGGCTGCCCCAAGCAGCCAACGTTCGG
CCTGAACGGCGTCAAGAAAGCGAAGTACTGCGCTGTCCATGCGAAGGCCG
GGATGGTGAACGTCCTCAGCAAGCGATGCGCCCACCGGGGCTGCATCACG
CGGCCGAACTACGGTGCTCCAGGCACCAAGAAGCCCGAATTTTGCGTCTC
CCACGCGAAGCACGGCATGGTGAACGTTGTCAACAAGACATGCAGCGCGG
AGGACTGCGCCAAGCAGCCGTCGTACGGCAATAGCGGGACCAAGGTGGCT
GAGTTCTGTTCCCGGCACGCCCGGGACGGTATGGTGGACGTCTACAAGAA
GAACTGCGCGTACCGAGGCTGCACCGTGGGCCCCAGTTACGGCGCGAAGG
GAGGGCGCAAGCGCGAGTTCTGCGCCCATCATGCCGCCGTGGGTATGGTG
AGGCTCACCGGTTCTATCTCCAAGACCAAGACTGCCGCCAGTGTCGGTGC
TTCTGCTGCTCGTGTTCCCTCGAAAGCAAAGGTGGCTCCCGCTGCCGCCG
CTGGTAGGGCAAAGAAATCCAGTGGCACTGCTGCTGTTGTTGCCCCCAAG
GCGAGGACTCACGATGTTGGCGGTGCCGCTTCTCCTAAAAGGGCGAAGGC
TTCCGTCGCTGCTGCTGCTGCTGCTACTGCTACTGCTACTGCTACTGCTG
CCGCTGTTTCCAAGGCAAAGAAATCCGGTGGCGTTTCTACTACTACTACT
ACTACCACGGTTGTTGTTTCCAAGCCTAAGAGTAAGACATCAGGTGGTAC
CGCAGTTCCCAAGGCGAAGTCTTCCGGCCGTACTCCAGCTGCCATCAAGT
CGGAAAAATCCGGCGGTGCGATGGCCACCTGTCCTGCTTCCGCTGTCCGC
AAGGCAAAGACTGCCGGTGGTGCTGCCCCCTCCGCTGCTGCTCCTCCAAG
GGCGAGGGCTGCCGCTGCTGCCGCTGCTGCCGCTGCTACCGCTTCTGCTT
CTGCTGCTCTAAAGGTAACGACTACCGGCTGTGGGGCGGGCAACAAGCGT
TCTCGAAGAAATTCAGCTGGGAGTGTGAGGATGGCGATCGATCGCCGCAC
GGCTGCGGAAGACGAGATGGAGGCCGCCTCGGACAGCTCAAAGGGTCGGG
GAGCCAAGCGAGCCCGCCGTGCCTCTGCCGTCAGCGAAGTGGCCTCGGCC
CCAGCCCCAGCCCCAGCCCCGGCCCCAGCTTCGGCCTTGGCTTCTGCTTC
GGCTCCGGCTTCGACTCCTTCTGCGGGGCCCCGCACTCCTTCGAAGCGCA
AGTGGTGGTCGCCGATCAATCTTTGGAGGTCAACGGCCGAAAAGGCTGCG
GCGGCGGCAGCATATTAA
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