mRNA_P-littoralis_Contig148.70.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.70.1
Unique NamemRNA_P-littoralis_Contig148.70.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig148.70.1 vs. uniprot
Match: D7G7T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T2_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.580e-64
Identity = 121/184 (65.76%), Postives = 135/184 (73.37%), Query Frame = 3 
Query:   66 MLPTGQRMAVRASQSHALLLLLLL--LQQHDLCPAFSVGMGIAGGQKSKLKMFKARYPLEGGPPLVKLHVAIIVQYTRGEGKDDKRVKSEQGD----LVLFDFLPAEPTAVPTTFRLLAGQDVPGNLRERDLRFLPPGSVYVGQSDATLEDMRGFVTAYPDRLSLISNNCVSFVDAFIARHRLE 599
            M+  GQR A  A   HA LLLLLL  L+Q   C A    +G+A   +S  KMFKARYPLEGGPP VKLH+AIIV+ +R  G+   R  SE  D    LVLFDFLP EPTA  TT RLL G DVPGNLRER+LRFLPPGSVYVG+SDAT+ DMRGFV  YPDRLSL+SNNC SFVDAF+ARHRLE
Sbjct:    1 MVILGQRAAALAGPWHAALLLLLLSSLRQLGFCSAL---LGVAPPHRSNFKMFKARYPLEGGPPQVKLHIAIIVEDSRSTGEKGGRPNSEDRDTGRRLVLFDFLPKEPTAFETTLRLLTGNDVPGNLRERELRFLPPGSVYVGESDATIGDMRGFVAKYPDRLSLVSNNCFSFVDAFVARHRLE 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7T2_ECTSI1.580e-6465.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:293332..295812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog554065.XP_005851067.1
Model size2481
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.17e-05
EggNOG OGs28WFN@1|root,2R37Q@2759|Eukaryota,38477@33090|Viridiplantae,34NSM@3041|Chlorophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_000390.1
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789699.0793636-UTR-P-littoralis_Contig148:293331..2951741680789699.0793636-UTR-P-littoralis_Contig148:293331..295174Pylaiella littoralis U1_48UTRP-littoralis_Contig148 293332..295174 -
1680789699.0993683-UTR-P-littoralis_Contig148:295747..2958121680789699.0993683-UTR-P-littoralis_Contig148:295747..295812Pylaiella littoralis U1_48UTRP-littoralis_Contig148 295748..295812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789699.089484-CDS-P-littoralis_Contig148:295174..2957471680789699.089484-CDS-P-littoralis_Contig148:295174..295747Pylaiella littoralis U1_48CDSP-littoralis_Contig148 295175..295747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.70.1prot_P-littoralis_Contig148.70.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 295175..295747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.70.1

>prot_P-littoralis_Contig148.70.1 ID=prot_P-littoralis_Contig148.70.1|Name=mRNA_P-littoralis_Contig148.70.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=191bp
MLPTGQRMAVRASQSHALLLLLLLLQQHDLCPAFSVGMGIAGGQKSKLKM
FKARYPLEGGPPLVKLHVAIIVQYTRGEGKDDKRVKSEQGDLVLFDFLPA
EPTAVPTTFRLLAGQDVPGNLRERDLRFLPPGSVYVGQSDATLEDMRGFV
TAYPDRLSLISNNCVSFVDAFIARHRLEEEEEQAQEERGR*
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mRNA from alignment at P-littoralis_Contig148:293332..295812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.70.1 ID=mRNA_P-littoralis_Contig148.70.1|Name=mRNA_P-littoralis_Contig148.70.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2481bp|location=Sequence derived from alignment at P-littoralis_Contig148:293332..295812- (Pylaiella littoralis U1_48)
CCGTCGTCAACAAGAAGACACATAGAGTTTGGTGAGGAGAGTCTGCTGTC
CTTAGTGAATGAAAGATGCTGCCGACTGGGCAAAGGATGGCCGTGAGGGC
GTCTCAATCGCATGCGTTGTTGCTTCTGCTTCTCCTCCTTCAACAGCATG
ATCTCTGTCCTGCTTTCTCCGTCGGAATGGGCATAGCTGGAGGCCAGAAG
AGCAAATTAAAGATGTTCAAGGCCAGATACCCGCTCGAAGGGGGACCGCC
GCTAGTCAAGCTGCACGTCGCGATCATTGTGCAATATACGAGGGGCGAAG
GCAAGGACGACAAGCGAGTAAAAAGCGAGCAGGGTGACCTGGTGCTCTTC
GATTTCCTTCCCGCGGAACCCACGGCAGTGCCAACTACATTTCGGCTCCT
CGCTGGGCAAGACGTTCCAGGGAACCTGCGAGAGCGGGATCTTCGATTTC
TTCCTCCTGGGTCGGTGTACGTGGGGCAGAGCGATGCGACTTTGGAGGAC
ATGCGGGGTTTTGTTACAGCGTATCCCGATCGATTGTCCTTGATTTCGAA
CAACTGCGTTTCATTTGTCGATGCGTTCATCGCGAGGCATCGCCTCGAGG
AGGAGGAGGAGCAGGCGCAGGAGGAGCGGGGGCGGTAGGAGTGCGCGTAG
TGTGGCGTGGATTACAGGTATACATAAAATGTACATCTGCTGGAGCTCGT
GCGTCCACCGTGCGGCCTTTTCGCATCAGTTTATGAGTTTGTCTCTATCA
ACATCAATACCCAGCAGCGAGGGATAGTGCGGCAGTCTATGCCAGTTACC
CGGTTGACCTAGAGTTGATACAACCCGGGAATGAAAAATGAACATATTGT
CTTATACTTGTAGGATATGGTACACACAAAAGAGAGAGTCGGGGTTCATA
GGCCTGGTTGATAACAATAACTGCGAGTATCGTTGCACTCCTTTTAGGTG
AGATTGTGGGGCTTATGCATGCACAATCATGGTGTTATTTTCTAGGGTTC
TAGCCGCTCATTCTGCGTTGGTGTGTGTTCGGTCCCAGGACCCCAAGCGA
CTCCGTGTTACTGTCTCCTCTAAGATTTGTTATTGGTTGTTTCATACTGA
TCGTGACGTTATCGAAATGGACTCCTATTCTTGCGACGACGGGGCCCGGG
TCTGGGACATCGTGCTGACGTGTAACAATGGTGATAACTCATCGACAGCA
CGTAGGTGGTGTAAATGCCAGCGCGGACACACTCGTGTAGCTCCACGCTT
AAATCTTGCCCGGGTGTGTGGTCACAAAGCAAGCAAGGCAACCAAACAAA
AGAATCGTGCCAGCGCAGACATCACGCGGCGGACGGTGCGCTTTTCATAG
CAGAGACTGGTATCCCATGCGGCCTTCGGTGGACCAGGTGCGAACCGCCG
GGAGCCCCGAATCGCACACCGGGTGTGGAAAGATTGTTCAGCACCCGGTT
GGCAATTCGGACCAAGAAGTCGCAGAGGACGTGGCTCACCACTGTGACCT
GACCAATGTTGGGGTAGAACCACTCAGGGAACCTCCGTGAGCTACGAAAG
TCGCGGAGAGGGGATGCGGAGATTACCCAGGGCAGGGCAGGATAAAAAGA
GCGTAATCTTTGTACGTGGCGGAAGGAAATCGAAGGAAGCGACTGGCTGG
GTTACGTCCTTCACGGAAGGTAATAGGAGCCATCTGGTATCCTGGGTGCG
GGTTGGCAAACACTCACAACGTCTGAGTGACTACTGTAGATCCGGCTGCG
CCTTCGCCGATGCAGATGTGCAGGGGTCCTGCGCATCCTGCTTCTCCGAT
TGTGACCACGCTTGATCTTTTACCTCGTGCCTCTTCTCCCGGCTCGTTGA
CAACGGCATCCGATGAGGAAATGTCTTCCCTCTGGGATTTTGTTGTGATT
TGTTCGTTTACACTATGATATTATCCATCATTCATGACTTCCGTAGCAGG
TGAGCATTAAGCCCCACGTGCATACACAGCGTTTCGCCTGAGTTCAACTG
TCTTCGATTCCGATTATAGTGGACATATTGTCACCCTGGTTCTACAGCCA
TTTTTCTGTTGTGTGTGCGGTACGAACTACACTTCGGGTTCCATTCTTGA
CGGAGAGAGAGAAAGAGAGGACACAAGGGTGTCAAATGGCATGACAGTAG
AGTGAATAGAGAGGCAGGGCCAGAACAGTGTATCGGCACGATGCACGGTG
GCGGGGTACAATATCCCAAGGTGGATTCAGTGAATATGGGCTAGCTCGAA
TCTGAGACATCAAGTGGGAGAACCGCATCAAAGATGTCTGATGTGATACG
CCATTTATTTGAGCGCGTCACGCTCGTAAGCGTACATTGTGTTTGATGCT
ACTTTGTATATTTGTATTTTTTCACTAAAAGTCATCGTTGAACCTTGTGA
CCTCAAGAGAACTGGAACAACGGTACATTATCTCTGATGATCAAAACAAA
AAAAATATTTGTATTGCTCTTTTGTGCTCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:293332..295812-

>mRNA_P-littoralis_Contig148.70.1 ID=mRNA_P-littoralis_Contig148.70.1|Name=mRNA_P-littoralis_Contig148.70.1|organism=Pylaiella littoralis U1_48|type=CDS|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig148:293332..295812- (Pylaiella littoralis U1_48)
ATGCTGCCGACTGGGCAAAGGATGGCCGTGAGGGCGTCTCAATCGCATGC
GTTGTTGCTTCTGCTTCTCCTCCTTCAACAGCATGATCTCTGTCCTGCTT
TCTCCGTCGGAATGGGCATAGCTGGAGGCCAGAAGAGCAAATTAAAGATG
TTCAAGGCCAGATACCCGCTCGAAGGGGGACCGCCGCTAGTCAAGCTGCA
CGTCGCGATCATTGTGCAATATACGAGGGGCGAAGGCAAGGACGACAAGC
GAGTAAAAAGCGAGCAGGGTGACCTGGTGCTCTTCGATTTCCTTCCCGCG
GAACCCACGGCAGTGCCAACTACATTTCGGCTCCTCGCTGGGCAAGACGT
TCCAGGGAACCTGCGAGAGCGGGATCTTCGATTTCTTCCTCCTGGGTCGG
TGTACGTGGGGCAGAGCGATGCGACTTTGGAGGACATGCGGGGTTTTGTT
ACAGCGTATCCCGATCGATTGTCCTTGATTTCGAACAACTGCGTTTCATT
TGTCGATGCGTTCATCGCGAGGCATCGCCTCGAGGAGGAGGAGGAGCAGG
CGCAGGAGGAGCGGGGGCGGTAG
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