mRNA_P-littoralis_Contig148.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.67.1
Unique NamemRNA_P-littoralis_Contig148.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig148.67.1 vs. uniprot
Match: A0A6H5JZ59_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ59_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 2.510e-48
Identity = 80/96 (83.33%), Postives = 88/96 (91.67%), Query Frame = 2 
Query:    8 VQDVFDKCVDDMEQAGIIEQRASPWGSAVTSVAKADCTPRFCVDLRATVNKNLIRKSWPMPKMASHIDTVAGAKYITVCDVPSAYHQIPVAAEEQD 295
            +Q+V DKCV +ME+AGIIEQRASPWGSAVT VAKAD +PRFCVD RAT+NKNLIRKSWPMP+MASHIDTVAGAKYITVCDV SAYHQIP+A  EQD
Sbjct:    1 MQEVIDKCVGEMEEAGIIEQRASPWGSAVTLVAKADGSPRFCVDYRATINKNLIRKSWPMPEMASHIDTVAGAKYITVCDVQSAYHQIPIAEAEQD 96
[Close]
BLAST of mRNA_P-littoralis_Contig148.67.1 vs. uniprot
Match: A0A6H5KHS5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS5_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.460e-39
Identity = 71/86 (82.56%), Postives = 78/86 (90.70%), Query Frame = 2 
Query:   41 MEQAGIIEQRASPWGSAVTSVAKADCTPRFCVDLRATVNKNLIRKSWPMPKMASHIDTVAGAKYITVCDVPSAYHQIPVAAE-EQD 295
            ME+AGI+EQRASPWGSAVT VAKAD TPRFCVD R TVNK+LIRKSWPMP+MASHIDTVAGAKYITVCDV SAYHQ+P+  + EQD
Sbjct:    1 MEEAGIVEQRASPWGSAVTLVAKADGTPRFCVDYRTTVNKHLIRKSWPMPEMASHIDTVAGAKYITVCDVQSAYHQLPITDKAEQD 86
[Close]
BLAST of mRNA_P-littoralis_Contig148.67.1 vs. uniprot
Match: A0A6H5L1A0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A0_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 9.780e-39
Identity = 69/98 (70.41%), Postives = 79/98 (80.61%), Query Frame = 2 
Query:    2 PRVQDVFDKCVDDMEQAGIIEQRASPWGSAVTSVAKADCTPRFCVDLRATVNKNLIRKSWPMPKMASHIDTVAGAKYITVCDVPSAYHQIPVAAEEQD 295
            PR Q+V DKCV+ ME   IIEQR S WGSAVT VAKAD TPRFCVD R+T+NK+LI+KSWPMP + SHIDTV GAK+ITVCD+ SAYHQI V   EQ+
Sbjct:  176 PRAQEVIDKCVEQMEDEEIIEQRPSSWGSAVTIVAKADGTPRFCVDYRSTINKSLIQKSWPMPDIESHIDTVGGAKFITVCDIQSAYHQIEVDEAEQE 273
[Close]
BLAST of mRNA_P-littoralis_Contig148.67.1 vs. uniprot
Match: A0A6H5K1J3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J3_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.230e-38
Identity = 71/86 (82.56%), Postives = 78/86 (90.70%), Query Frame = 2 
Query:   41 MEQAGIIEQRASPWGSAVTSVAKADCTPRFCVDLRATVNKNLIRKSWPMPKMASHIDTVAGAKYITVCDVPSAYHQIPVAAE-EQD 295
            ME+AGI+EQRASPWGSAVT VAKAD TPRFCVD R TVNK+LIRKSWPMP+MASHIDTVAGAKYITVCDV SAYHQ+P+  + EQD
Sbjct:    1 MEEAGIVEQRASPWGSAVTLVAKADGTPRFCVDYRTTVNKHLIRKSWPMPEMASHIDTVAGAKYITVCDVQSAYHQLPITDKAEQD 86
[Close]
BLAST of mRNA_P-littoralis_Contig148.67.1 vs. uniprot
Match: A0A6H5KKE6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE6_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.820e-37
Identity = 70/98 (71.43%), Postives = 79/98 (80.61%), Query Frame = 2 
Query:    2 PRVQDVFDKCVDDMEQAGIIEQRASPWGSAVTSVAKADCTPRFCVDLRATVNKNLIRKSWPMPKMASHIDTVAGAKYITVCDVPSAYHQIPVAAEEQD 295
            PR Q+V DKCV+ ME   IIEQR S WGSAVT VAKAD TPRFCVD R+T+NK+LIRKSWPMP + SHIDTV GAK+ITVCD+ SAYHQI V   EQ+
Sbjct:  176 PRAQEVIDKCVEQMEDEEIIEQRPSSWGSAVTIVAKADGTPRFCVDYRSTINKSLIRKSWPMPDIESHIDTVGGAKFITVCDIQSAYHQIEVDEAEQE 273
[Close]
BLAST of mRNA_P-littoralis_Contig148.67.1 vs. uniprot
Match: A0A6H5KXQ3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXQ3_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 9.290e-36
Identity = 64/85 (75.29%), Postives = 72/85 (84.71%), Query Frame = 2 
Query:   41 MEQAGIIEQRASPWGSAVTSVAKADCTPRFCVDLRATVNKNLIRKSWPMPKMASHIDTVAGAKYITVCDVPSAYHQIPVAAEEQD 295
            ME+ GIIEQR S WGSAV  VAKAD TPRFCVD R+T+NKNLIRKSWPMP + SHIDTV GAKYITVCD+ +AYHQ+ + AEEQD
Sbjct:    1 MEKDGIIEQRPSLWGSAVAIVAKADGTPRFCVDYRSTINKNLIRKSWPMPDIESHIDTVGGAKYITVCDIQNAYHQMEIPAEEQD 85
[Close]
BLAST of mRNA_P-littoralis_Contig148.67.1 vs. uniprot
Match: A0A6H5JWI2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI2_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.610e-32
Identity = 62/85 (72.94%), Postives = 69/85 (81.18%), Query Frame = 2 
Query:   41 MEQAGIIEQRASPWGSAVTSVAKADCTPRFCVDLRATVNKNLIRKSWPMPKMASHIDTVAGAKYITVCDVPSAYHQIPVAAEEQD 295
            ME   IIEQR S WGSAVT VAKAD TPRFCVD R+T+NK+LIRKSWPMP + SHIDTV GAK+ITVCD+ SAYHQI V   EQ+
Sbjct:    1 MEDEEIIEQRPSSWGSAVTIVAKADGTPRFCVDYRSTINKSLIRKSWPMPDIESHIDTVGGAKFITVCDIQSAYHQIEVDEAEQE 85
[Close]
BLAST of mRNA_P-littoralis_Contig148.67.1 vs. uniprot
Match: A0A6H5K3U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.580e-28
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 2 
Query:    2 PRVQDVFDKCVDDMEQAGIIEQRASPWGSAVTSVAKADCTPRFCVDLRATVNKNLIRKSWPMPKMASHIDTVAGAKYITVCDVPSAYHQIPVAAEEQD 295
            PR   V DKCV+DM + GIIE+R SPWGS  T VAK++ +PRFCVD R T+N+N+IRK+WPMP + S +D V  A YITV D+ SA+ QIPVA E  D
Sbjct:   32 PRTSAVIDKCVEDMLEWGIIEKRPSPWGSPCTIVAKSNGSPRFCVDYRHTLNRNIIRKTWPMPNLESCLDAVGDALYITVADILSAFWQIPVAEEHVD 129
[Close]
BLAST of mRNA_P-littoralis_Contig148.67.1 vs. uniprot
Match: A0A6H5JHS5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.260e-26
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 2 
Query:    2 PRVQDVFDKCVDDMEQAGIIEQRASPWGSAVTSVAKADCTPRFCVDLRATVNKNLIRKSWPMPKMASHIDTVAGAKYITVCDVPSAYHQIPVAAEEQD 295
            PR   V DKCV DM + GIIE+R SPWGS  T VAK++ +PRFC+D R T+N+N+IRK+ PMP + S +D V  A YITV D+ SA+ QIPVA E  D
Sbjct:   32 PRTSAVIDKCVGDMLEWGIIEKRPSPWGSPCTIVAKSNGSPRFCIDYRHTLNRNIIRKTCPMPNLESCLDAVGDALYITVADILSAFWQIPVAEEHVD 129
[Close]
BLAST of mRNA_P-littoralis_Contig148.67.1 vs. uniprot
Match: A0A6H5JGV3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.080e-25
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 2 
Query:    2 PRVQDVFDKCVDDMEQAGIIEQRASPWGSAVTSVAKADCTPRFCVDLRATVNKNLIRKSWPMPKMASHIDTVAGAKYITVCDVPSAYHQIPVAAEEQD 295
            PRV  V DKCV +M + GIIE+R S WGS  T VAK + +PRFCVD R T+N++++RK+WPMP + S +D V  A YITV D+ SA+ QIPVA E  D
Sbjct:  183 PRVATVSDKCVAEMLEWGIIEKRPSAWGSPCTLVAKKNGSPRFCVDYRHTLNRHIVRKTWPMPNLESCLDAVGQALYITVADILSAFWQIPVAEEHVD 280
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ59_9PHAE2.510e-4883.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KHS5_9PHAE2.460e-3982.56Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L1A0_9PHAE9.780e-3970.41Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1J3_9PHAE3.230e-3882.56Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKE6_9PHAE1.820e-3771.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KXQ3_9PHAE9.290e-3675.29Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWI2_9PHAE2.610e-3272.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K3U6_9PHAE2.580e-2859.18Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHS5_9PHAE1.260e-2657.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JGV3_9PHAE3.080e-2556.12Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:285705..286355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7668.SPU_016471-tr
PFAMsRVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Model size651
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.24e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
DescriptionK02A2.6-like
Cds size273
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789699.0314865-UTR-P-littoralis_Contig148:285704..2857441680789699.0314865-UTR-P-littoralis_Contig148:285704..285744Pylaiella littoralis U1_48UTRP-littoralis_Contig148 285705..285744 +
1680789699.050012-UTR-P-littoralis_Contig148:286017..2863551680789699.050012-UTR-P-littoralis_Contig148:286017..286355Pylaiella littoralis U1_48UTRP-littoralis_Contig148 286018..286355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789699.041124-CDS-P-littoralis_Contig148:285744..2860171680789699.041124-CDS-P-littoralis_Contig148:285744..286017Pylaiella littoralis U1_48CDSP-littoralis_Contig148 285745..286017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.67.1prot_P-littoralis_Contig148.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 285745..286017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.67.1

>prot_P-littoralis_Contig148.67.1 ID=prot_P-littoralis_Contig148.67.1|Name=mRNA_P-littoralis_Contig148.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
MEQAGIIEQRASPWGSAVTSVAKADCTPRFCVDLRATVNKNLIRKSWPMP
KMASHIDTVAGAKYITVCDVPSAYHQIPVAAEEQDNADTT*
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mRNA from alignment at P-littoralis_Contig148:285705..286355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.67.1 ID=mRNA_P-littoralis_Contig148.67.1|Name=mRNA_P-littoralis_Contig148.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=651bp|location=Sequence derived from alignment at P-littoralis_Contig148:285705..286355+ (Pylaiella littoralis U1_48)
TCCGCGTGTACAAGACGTATTTGACAAATGTGTTGACGACATGGAGCAAG
CAGGGATAATCGAACAGCGCGCGAGTCCATGGGGATCTGCAGTAACGTCG
GTAGCAAAGGCTGACTGCACCCCTCGGTTTTGCGTGGACTTAAGGGCGAC
AGTGAATAAAAACTTGATAAGAAAATCGTGGCCAATGCCAAAAATGGCAA
GTCATATAGATACCGTAGCAGGAGCCAAATACATCACAGTTTGCGATGTA
CCATCAGCTTATCATCAAATCCCTGTAGCAGCAGAGGAACAAGATAACGC
AGATACGACGTAATGTGCAAGTTTTTCGCATGCGGTATTTCTCCAGCCCG
CTTCCACAGCAGCAGCAGCAGGAGAAGCCTCTCCTTGTTGTATTCCAAAC
AAAAGTGAGAGGCCAATGGCCTTCGAAGGCCACCACACACGTGTCTTCTC
CCTACCGCGTAGGAAAATCCCAATCCCCCGCTCCCCCCTTGTTGTAGACA
GCAGAGAGAGCATGCAGCACCGCTGTGTGCACTTTTTTTTCCCATATCAA
TCGGTTGATTCGGTCGCTGGGTGTTGCGGAGGGACAAGGTTTGATTGACG
TCTGTCATAATGTCCAGATTATGCCAGCGACGATTCCTGCACCCCATACC
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:285705..286355+

>mRNA_P-littoralis_Contig148.67.1 ID=mRNA_P-littoralis_Contig148.67.1|Name=mRNA_P-littoralis_Contig148.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig148:285705..286355+ (Pylaiella littoralis U1_48)
ATGGAGCAAGCAGGGATAATCGAACAGCGCGCGAGTCCATGGGGATCTGC
AGTAACGTCGGTAGCAAAGGCTGACTGCACCCCTCGGTTTTGCGTGGACT
TAAGGGCGACAGTGAATAAAAACTTGATAAGAAAATCGTGGCCAATGCCA
AAAATGGCAAGTCATATAGATACCGTAGCAGGAGCCAAATACATCACAGT
TTGCGATGTACCATCAGCTTATCATCAAATCCCTGTAGCAGCAGAGGAAC
AAGATAACGCAGATACGACGTAA
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