mRNA_P-littoralis_Contig148.62.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.62.4
Unique NamemRNA_P-littoralis_Contig148.62.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig148.62.4 vs. uniprot
Match: D7FNI7_ECTSI (SASA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI7_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 4.540e-117
Identity = 183/259 (70.66%), Postives = 211/259 (81.47%), Query Frame = 2
Query: 1298 TPASSDCSAKRHVPGYDVVLLMGQSNMSGRGQGYDEQLDRPNNPRIQQWSRDNRIILASEHLEHDDFSMVSEESVGMGTAFGRAYVETLPAQRNVLVVPTAHGGTRLVHGPWSPGGRLFEDAVTRLAAALASDEDGGNCVAGVLWHQGESDAGRHVDQETYQSAWTEMIDALRFRVPAAAQAPVVLGEFSQVWVENNEEMAAPVLAAIRAIPDSVPFTAVAPSDGLSANSAGNVHFDAVGQREYGQRYFDKLGDAIGNN 2074
            T  S+DC+AKR V G DVVLLMGQSNMSG G+GYD  +D PN+PRIQQWSRDN +I ASE L+H D     +  VGMGTAFGRA+V+TLPA RNVL+VPTA G TRLV+GPWSPGG LFEDAVTR+ AALAS+   GNCVA +LWHQGESDAG  +DQETYQS WT MI+ LR R+PAAA+APV+LGEF+   +  N  ++ P++AAIRAIPDSVPFTAVAPSDGLS NS G VHFDAVGQREYGQRYFDKL DA+ N+
Sbjct:   24 TSVSADCTAKRDVAGSDVVLLMGQSNMSGWGEGYDADIDGPNDPRIQQWSRDNTVITASERLQHADHGRAGKRRVGMGTAFGRAFVKTLPANRNVLLVPTAFGATRLVNGPWSPGGNLFEDAVTRMEAALASNGAAGNCVAAILWHQGESDAGDGIDQETYQSIWTNMINTLRSRIPAAAEAPVILGEFTPHMLARNRALSEPIIAAIRAIPDSVPFTAVAPSDGLSTNSVGPVHFDAVGQREYGQRYFDKLDDAVRNS 282          
BLAST of mRNA_P-littoralis_Contig148.62.4 vs. uniprot
Match: D7FNJ0_ECTSI (SASA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ0_ECTSI)

HSP 1 Score: 374 bits (959), Expect = 2.500e-116
Identity = 186/273 (68.13%), Postives = 217/273 (79.49%), Query Frame = 2
Query: 1259 EPIGARTAPVP-LKTPASSDCSAKRHVPGYDVVLLMGQSNMSGRGQGYDEQLDRPNNPRIQQWSRDNRIILASEHLEHDDFSMVSEESVGMGTAFGRAYVETLPAQRNVLVVPTAHGGTRLVHGPWSPGGRLFEDAVTRLAAALASDEDGGNCVAGVLWHQGESDAGRHVDQETYQSAWTEMIDALRFRVPAAAQAPVVLGEFSQVWVENNEEMAAPVLAAIRAIPDSVPFTAVAPSDGLSANSAGNVHFDAVGQREYGQRYFDKLGDAIGNN 2074
            EP  A  + +P +    S+D +AKR V G DV+LLMGQSNMSGRGQGYD  +D PN+PRIQQWSR N +I ASEHL+H DF++V E  VGMGTAFGRAYVETLPA+RNVL+V T +GGTRLV+GPWSPGGRLFEDAV R  AALAS+   GNCVA VLWHQGESDA   VDQETYQ  WT+MI+ LR R+PAAA+APV+LGEF+  W+  N  ++ P+L+AIRAIPDSVPFT VAPSDGLS+N    VHF A  QREYGQRYFDKLGDA+ N+
Sbjct:    6 EPCEALESAIPGIVHHVSADYTAKRKVAGSDVILLMGQSNMSGRGQGYDANIDGPNDPRIQQWSRANTVITASEHLQHADFAIVEETRVGMGTAFGRAYVETLPAKRNVLLVSTGYGGTRLVNGPWSPGGRLFEDAVRRTEAALASNGATGNCVAAVLWHQGESDAIAGVDQETYQFTWTDMINTLRSRIPAAAEAPVILGEFTPAWIAGNRALSEPILSAIRAIPDSVPFTVVAPSDGLSSNFGDPVHFTAAAQREYGQRYFDKLGDAVRNS 278          
BLAST of mRNA_P-littoralis_Contig148.62.4 vs. uniprot
Match: D7FNI9_ECTSI (SASA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNI9_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 5.530e-115
Identity = 181/265 (68.30%), Postives = 211/265 (79.62%), Query Frame = 2
Query: 1277 TAPVPLKTPASSDCSAKRHVPGYDVVLLMGQSNMSGRGQGYDEQLDRPNNPRIQQWSRDNRIILASEHLEHDDFSMVSEESVGMGTAFGRAYVETLPAQRNVLVVPTAHGGTRLVHGPWSPGGRLFEDAVTRLAAALASDEDGGNCVAGVLWHQGESDAGRHVDQETYQSAWTEMIDALRFRVPAAAQAPVVLGEFSQVWVENNEEMAAPVLAAIRAIPDSVPFTAVAPSDGLSANSAGNVHFDAVGQREYGQRYFDKLGDAIGN 2071
            TAP       S+DC+AKR+V G DVVLLMGQSNMSG G+GYD  +D P++PRIQQWSR N +I ASE L+H DF  + +  VGMGTAFGRAYV+TLPA RNVL+VPTA G TRLV+GPWSPGG LFEDAVTR+ AALAS+   GNCVA VLWHQGE DA   +DQETYQS WT+MI+ LR R+PAAA+APV+LGEF+   +  N  ++ P++AAIRAIPDSVPFTAVAPSDGLS+N    VHFDA  QREYGQRYFDKLGDA+ N
Sbjct:    7 TAPPSTNHQVSADCAAKRNVAGSDVVLLMGQSNMSGWGEGYDADIDGPDDPRIQQWSRANTVITASERLQHADFDRIDQTRVGMGTAFGRAYVKTLPANRNVLLVPTAFGATRLVNGPWSPGGNLFEDAVTRMEAALASNGAVGNCVAAVLWHQGEGDAAGRIDQETYQSTWTDMINTLRSRIPAAAEAPVILGEFTPHMLARNRALSEPIIAAIRAIPDSVPFTAVAPSDGLSSNFGDPVHFDAAAQREYGQRYFDKLGDAVRN 271          
BLAST of mRNA_P-littoralis_Contig148.62.4 vs. uniprot
Match: A0A6H5JM94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM94_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 3.440e-108
Identity = 186/256 (72.66%), Postives = 210/256 (82.03%), Query Frame = 2
Query: 1307 SSDCSAKRHVPGYDVVLLMGQSNMSGRGQGYDEQLDRPNNPRIQQWSRDNRIILASEHLEHDDFSMVSEESVGMGTAFGRAYVETLPAQRNVLVVPTAHGGTRLVHGPWSPGGRLFEDAVTRLAAALASDEDGGNCVAGVLWHQGESDAGRHVDQETYQSAWTEMIDALRFRVPAAAQAPVVLGEFSQVWVENNEEMAAPVLAAIRAIPDSVPFTAVAPSDGLSANSAGNVHFDAVGQREYGQRYFDKLGDAIGNN 2074
            S+D +AKR V G DV+LLMGQSNMSGRGQGYD  +D PN+PRIQQWSR N +I ASEHL+H DF +V E  VGMGTAFGRAYVETLPA+RNVL+V T +GGTRLV+GPWSPGGRLFEDAV R  AALAS+   GNCVA VLWHQGESDA   VDQETYQS WT MI+ LR R+PAAA+APV+LGEF+  W   +   A P+L+AIRAIPDSVPFT VAPSDGLS+N    VHFDAVGQREYGQRYFDKLGDA+ N+
Sbjct:  833 SADYTAKRKVAGSDVILLMGQSNMSGRGQGYDANIDGPNDPRIQQWSRANTVITASEHLQHADFDVVEETRVGMGTAFGRAYVETLPAKRNVLLVSTGYGGTRLVNGPWSPGGRLFEDAVRRTEAALASNGATGNCVAAVLWHQGESDAVAGVDQETYQSTWTNMINTLRSRIPAAAEAPVILGEFTPAWTAEDRARAEPILSAIRAIPDSVPFTVVAPSDGLSSNVDDPVHFDAVGQREYGQRYFDKLGDAVRNS 1088          
BLAST of mRNA_P-littoralis_Contig148.62.4 vs. uniprot
Match: A0A0K1PM06_9DELT (Phage protein n=2 Tax=Labilithrix luteola TaxID=1391654 RepID=A0A0K1PM06_9DELT)

HSP 1 Score: 197 bits (501), Expect = 4.310e-53
Identity = 119/258 (46.12%), Postives = 154/258 (59.69%), Query Frame = 2
Query: 1310 SDCSAKRHVPGYDVVLLMGQSNMSGRGQGYDEQLDRPNNPRIQQWSR---DNRIILASEHLEHDDFSMVSEESVGMGTAFGRAYVE-TLPAQRNVLVVPTAHGGTRLVHGPWSPGGRLFEDAVTRLAAALASDEDGGNCVAGVLWHQGESDAGRHVDQETYQSAWTEMIDALRFRVPAAAQAPVVLGEFSQVWVENNEEMAAPVLAAIRAIPDSVPFTAVAPSDGLSANSAGNVHFDAVGQREYGQRYFDKLGDAIGN 2071
            +D +A     GYDV LL GQSNM GRG  +D  LD P+ P I QW R   D  I+ A   L+H+D +++  + VGMG +F +AY E + P  R +L+VPTA GG+      W+PG  LFEDAV R  AA+A+D   GN     LWHQGE+D G++ D  TY  A   MI A R RV  A+ AP +LG+F   W  +    A+ + +AI A P  VPFT+VAPS GL++N+   VHFDA  QR YG RY+  L  A  N
Sbjct:   14 ADVAAPSPSSGYDVFLLAGQSNMVGRGASFDAALDTPH-PAIFQWGRGERDGMIVPAVARLDHNDTALL--DRVGMGLSFAKAYYEASQPTPRPILLVPTARGGSSFSAHQWNPGDPLFEDAVLRGNAAMATDP--GNRFVAFLWHQGENDVGQY-DNATYSQALDAMIGAFRARVAGASSAPFILGQFCPDWSPDPAAKAS-ISSAIDATPQRVPFTSVAPSAGLTSNAGDAVHFDAPAQRTYGARYWQALDVARAN 264          
BLAST of mRNA_P-littoralis_Contig148.62.4 vs. uniprot
Match: A0A0K8P381_IDESA (Acetylxylan esterase related enzyme n=1 Tax=Ideonella sakaiensis (strain NBRC 110686 / TISTR 2288 / 201-F6) TaxID=1547922 RepID=A0A0K8P381_IDESA)

HSP 1 Score: 182 bits (463), Expect = 1.620e-47
Identity = 116/267 (43.45%), Postives = 153/267 (57.30%), Query Frame = 2
Query: 1307 SSDCSAKRHVPGYDVVLLMGQSNMSGRGQ----GYDEQLDRPNNPRIQQWSRDNRIILASEHLEHDDFSMVSEESVGMGTAFGRAYVETLPAQRNVLVVPTAHGGTRLVHGPWSPGGRLFEDAVTRLAAALASDEDGGNCVAGVLWHQGESDAGRHVDQETYQSAWTEMIDALRFRVPAA---AQAPVVLGEFSQVWVENNEEMAAP-VLAAIRAIPDSVPFTAVAPSDGLSANSA----GNVHFDAVGQREYGQRYFDKLGDAIGN 2071
            S+ C+ KR V GYDVVLL+GQSNMSG G     G+D       +PRIQQW+    + LAS+ L+H D +  +   +G G +F RAY+  LP  R VL+VP A+ GT   +  W+PG  LFE AVTRL AALASD  GGNC+A +LW QGESD       + YQ+A   MI  LR R+ A    A  P +LG+FS  W+          +L  I   P  + +TAV  + GL++N      G VH DA   R YG+R+++ L  A+ N
Sbjct:   47 SAACTDKRGVAGYDVVLLIGQSNMSGYGAYIVPGFDT-----TDPRIQQWTMAGGMALASDPLQHPD-APFNVGRIGPGMSFARAYLAALPTARKVLLVPAAYNGTAFSNRRWNPGDDLFEAAVTRLNAALASD--GGNCLAAILWSQGESDVDTMTGAQ-YQAALDTMIGTLRTRIAAGQGGATVPFLLGQFSPDWIAPAPTPGQQAILDVINGTPGRLRYTAVVSTAGLTSNLTQGLNGAVHLDASSHRIYGRRFYEALPVALAN 304          
BLAST of mRNA_P-littoralis_Contig148.62.4 vs. uniprot
Match: UPI00165091F7 (sialate O-acetylesterase n=3 Tax=Methylobacteriaceae TaxID=119045 RepID=UPI00165091F7)

HSP 1 Score: 173 bits (438), Expect = 7.950e-45
Identity = 105/249 (42.17%), Postives = 138/249 (55.42%), Query Frame = 2
Query: 1316 CSAKRHVPGYDVVLLMGQSNMSGRGQGYDEQLDRPNNPRIQQWSRDN---RIILASEHLEHDDFSMVSEESVGMGTAFGRAYVETLPAQRNVLVVPTAHGGTRLVHGPWSPGGRLFEDAVTRLAAALASDEDGGNCVAGVLWHQGESDAGRHVDQETYQSAWTEMIDALRFRVPAAAQAPVVLGEFSQVWVENNEEMAAPVLAAIRAIPDSVPFTAVAPSDGLSANSAGNVHFDAVGQREYGQRYFDKL 2053
            CS+     G DVVLL GQSNM G G G+D  LD   +PRI QWS+     RI+ A + L H      +   VG+G +F RAY+ T P  R +L+VP A GGT   +G W+PG  LFE AV R  AAL  D     C+A +LWHQGE+DAG  +    Y +     + A R R+  A Q P V G F   WV ++    A +L A+  + D+V  T    +DGL+ N+   +HFDA  QR  G+RYF+ L
Sbjct:    2 CSSTDRGRGTDVVLLAGQSNMVGFGLGFDATLDGMPDPRIVQWSQAGSRGRIVPAIDPLLHPG---PAAGRVGLGLSFARAYIATRPPGRRILLVPAAVGGTGFANGHWNPGDDLFEGAVRRTRAAL--DAAPNACLAAILWHQGEADAGA-LSGPDYAARLARTVAAFRARIGGARQVPFVTGGFEPDWVTSSPARLA-ILDALAHLSDAVALTTNVSADGLAGNAGDRIHFDAASQRILGRRYFEAL 243          
BLAST of mRNA_P-littoralis_Contig148.62.4 vs. uniprot
Match: A0A5C8SL53_9HYPH (Sialate O-acetylesterase n=4 Tax=unclassified Methylobacterium TaxID=2615210 RepID=A0A5C8SL53_9HYPH)

HSP 1 Score: 174 bits (441), Expect = 8.350e-44
Identity = 106/253 (41.90%), Postives = 141/253 (55.73%), Query Frame = 2
Query: 1304 ASSDCSAKRHVPGYDVVLLMGQSNMSGRGQGYDEQLDRPNNPRIQQWSRDN---RIILASEHLEHDDFSMVSEESVGMGTAFGRAYVETLPAQRNVLVVPTAHGGTRLVHGPWSPGGRLFEDAVTRLAAALASDEDGGNCVAGVLWHQGESDAGRHVDQETYQSAWTEMIDALRFRVPAAAQAPVVLGEFSQVWVENNEEMAAPVLAAIRAIPDSVPFTAVAPSDGLSANSAGNVHFDAVGQREYGQRYFDKL 2053
            A++ CS+     G DVVLL GQSNM G G G+D  LD   +PRI QWS+     RI+ A + L H      +   VG+G +F RAY+ T P  R +L+VP A GGT   +G W+PG  LFE AV R  AAL  D     C+A +LWHQGE+DAG  +    Y +     + A R R+  A Q P V G F   WV ++    A +L A+  + D+V  T    +DGL+ N+   +HFDA  QR  G+RYF+ L
Sbjct:  119 AAAVCSSTDRGRGTDVVLLAGQSNMVGFGLGFDATLDGMPDPRIVQWSQAGSRGRIVPAIDPLLHPG---PAAGRVGLGLSFARAYIATRPPGRRILLVPAAVGGTGFANGHWNPGDDLFEGAVRRTRAAL--DAAPNACLAAILWHQGEADAGA-LSGPDYAARLARTVAAFRARIGGARQVPFVTGGFEPDWVTSSPARLA-ILDALAHLSDAVALTTNVSADGLAGNAGDRIHFDAASQRILGRRYFEAL 364          
BLAST of mRNA_P-littoralis_Contig148.62.4 vs. uniprot
Match: A0A2E9BQB5_9BURK (Fibronectin type-III domain-containing protein n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A2E9BQB5_9BURK)

HSP 1 Score: 161 bits (408), Expect = 1.160e-37
Identity = 110/271 (40.59%), Postives = 145/271 (53.51%), Query Frame = 2
Query: 1301 PASSDCSAKRHVPGYDVVLLMGQSNMSGRGQGYDEQLDRPNNPRIQQ---WS-RDNRIILASEHLEHDDFSMVSEESVGMGTAFGRAYVETLPAQRNVLVVPTAHGGTRLVHGPWSPGGRLFEDAVTRLAAALASDEDGGNCVAGVLWHQGESDAGRHVDQET-YQSAWTEMIDALRFRVPAAAQAPVVLGEFSQVW--VENNEEMA-------APVLAAIRAIPDSVPFTAVAPSDGLSANSAGNVHFDAVGQREYGQRYFDKLGDAIGN 2071
            PA  + SA+    G+DV LL GQSNM G  + +D  LD P+ PRI Q   W+   N +I A + L+H       +  VG+   F RAY+  LP  R +L+VP+A GGT      W+PG  LFE AV R  AA+A+  +  N  AG+LWHQGE D      Q   Y +A    I   R R+  AA AP++LG+F+  W  V+     A       A ++ AI      VPFTAVA S GL +     +HF A GQRE+G RYF +L  A+ N
Sbjct:   21 PAVPETSAET---GFDVFLLAGQSNMVGWDKNFDPVLDAPD-PRILQLGFWNDHRNFVIPAIDPLDHPQ----RDNGVGLAMQFSRAYLNDLPKGRGILLVPSAFGGTGFYQQRWNPGNDLFEQAVERANAAMATHPN--NRFAGILWHQGEDDVRFWGSQPARYAAALDAAIYGFRARIAGAASAPMILGKFTDSWGLVDTTFNAAGETTAAKANIMQAIDETTQRVPFTAVASSTGLPSPPGDPIHFSAAGQREHGLRYFAQLPHALAN 281          
BLAST of mRNA_P-littoralis_Contig148.62.4 vs. uniprot
Match: A0A411X0E2_9BURK (SASA domain-containing protein n=2 Tax=Massilia albidiflava TaxID=321983 RepID=A0A411X0E2_9BURK)

HSP 1 Score: 125 bits (314), Expect = 2.090e-27
Identity = 91/253 (35.97%), Postives = 130/253 (51.38%), Query Frame = 2
Query: 1340 GYDVVLLMGQSNMSGRGQGYDEQLDRPNNPRIQQW-SRDNRIILASEHLEHDDFSMVSEESVGMGTAFGRAYVETLPAQRNVLVVPTAHGGTRLVH--GPWSPGGR----LFEDAVTRLAAALASDEDGGNCV--AGVLWHQGESDAGRHVDQETYQSAWTEMIDALRFRVPAAAQA-PVVLGEFSQVWVENNEEMAAPVLAAIRAIPDSVPFTAVAPSDGLSANSAGN-VHFDAVGQREYGQRYFDKLGDAI 2065
            GYDVVLL GQSNMSGRG G D   D P +PR+  W +R N + LA + L H D        +G G +FG+AY+    A R +++V  A+GGT      G W   G     L  +AV R  AA+ +    G     A +LWHQGE+D G  +  E Y +    +   LR  +  A  + P ++G++    +  +  +   +    R +P ++  +A   S GLS NS  + VHFDA  QR+ G+RY   L DA+
Sbjct:   64 GYDVVLLAGQSNMSGRGLGTDPMADTPADPRLLAWDARANTLRLARDPLPHQDRGE-RPVRIGPGISFGQAYLARGSAGRQLVLVAAAYGGTGFSDNAGSWRVTGAAVSPLAAEAVARANAAMRAARARGAPARFAAILWHQGETDGGNRMAPEAYAAELVALATYLRSHIDGAGPSTPFIVGQYVPAHLAADRFLQR-IADVNRELPATLAHSACVGSHGLSGNSTRDAVHFDAASQRDMGRRYAAAL-DAL 313          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.62.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNI7_ECTSI4.540e-11770.66SASA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FNJ0_ECTSI2.500e-11668.13SASA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FNI9_ECTSI5.530e-11568.30SASA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JM94_9PHAE3.440e-10872.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0K1PM06_9DELT4.310e-5346.12Phage protein n=2 Tax=Labilithrix luteola TaxID=13... [more]
A0A0K8P381_IDESA1.620e-4743.45Acetylxylan esterase related enzyme n=1 Tax=Ideone... [more]
UPI00165091F77.950e-4542.17sialate O-acetylesterase n=3 Tax=Methylobacteriace... [more]
A0A5C8SL53_9HYPH8.350e-4441.90Sialate O-acetylesterase n=4 Tax=unclassified Meth... [more]
A0A2E9BQB5_9BURK1.160e-3740.59Fibronectin type-III domain-containing protein n=1... [more]
A0A411X0E2_9BURK2.090e-2735.97SASA domain-containing protein n=2 Tax=Massilia al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:287284..292801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNJ0
PFAMsSASA
Model size3933
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0016787
Exons3
Evalue7.44e-127
EggNOG OGs28M03@1|root,2RGKB@2759|Eukaryota
DescriptionCarbohydrate esterase, sialic acid-specific acetylesterase
Cds size1197
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789698.9500296-UTR-P-littoralis_Contig148:287283..2881781680789698.9500296-UTR-P-littoralis_Contig148:287283..288178Pylaiella littoralis U1_48UTRP-littoralis_Contig148 287284..288178 +
1680789698.9927027-UTR-P-littoralis_Contig148:290960..2928011680789698.9927027-UTR-P-littoralis_Contig148:290960..292801Pylaiella littoralis U1_48UTRP-littoralis_Contig148 290961..292801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789698.9629443-CDS-P-littoralis_Contig148:288178..2885171680789698.9629443-CDS-P-littoralis_Contig148:288178..288517Pylaiella littoralis U1_48CDSP-littoralis_Contig148 288179..288517 +
1680789698.9737825-CDS-P-littoralis_Contig148:289415..2895321680789698.9737825-CDS-P-littoralis_Contig148:289415..289532Pylaiella littoralis U1_48CDSP-littoralis_Contig148 289416..289532 +
1680789698.982184-CDS-P-littoralis_Contig148:290219..2909601680789698.982184-CDS-P-littoralis_Contig148:290219..290960Pylaiella littoralis U1_48CDSP-littoralis_Contig148 290220..290960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.62.4prot_P-littoralis_Contig148.62.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 288179..290960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.62.4

>prot_P-littoralis_Contig148.62.4 ID=prot_P-littoralis_Contig148.62.4|Name=mRNA_P-littoralis_Contig148.62.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=399bp
MSFLANICISQELSASKSNLCCLLCQCFSTSKTTLTPELFLFSYSRWVSL
EVRSCQLILSPRTSVCLRCSAPRRIGAMRSMGAAKACVLPLLVRSGASGS
IATYLTIDEVGHEAVHGPPVAEPIGARTAPVPLKTPASSDCSAKRHVPGY
DVVLLMGQSNMSGRGQGYDEQLDRPNNPRIQQWSRDNRIILASEHLEHDD
FSMVSEESVGMGTAFGRAYVETLPAQRNVLVVPTAHGGTRLVHGPWSPGG
RLFEDAVTRLAAALASDEDGGNCVAGVLWHQGESDAGRHVDQETYQSAWT
EMIDALRFRVPAAAQAPVVLGEFSQVWVENNEEMAAPVLAAIRAIPDSVP
FTAVAPSDGLSANSAGNVHFDAVGQREYGQRYFDKLGDAIGNNGVPAT*
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mRNA from alignment at P-littoralis_Contig148:287284..292801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.62.4 ID=mRNA_P-littoralis_Contig148.62.4|Name=mRNA_P-littoralis_Contig148.62.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=5518bp|location=Sequence derived from alignment at P-littoralis_Contig148:287284..292801+ (Pylaiella littoralis U1_48)
GTGAAAAAAGATGATCCGACGTGGAGGGGGCAGATGGTATTTTTTCTGTT CGATCAGGTCTTGCTGTCTAGACTGTGAATCTCGATAGGGCCTTTATGTG CACCGTCTTCGGTCACTTTTTATCATTTGTTGCGTCAGTGCAAATTCATT CTGTCAACGGGTAAAAGTGTTTTTTCAAGATCTTTTCAAGATCTTGTAGG GGTTCATCCTCGAGTCCAAAGCAAGGTCCGAATCAAACCCGATTTGGGGA CAAAGCGAGGTTGCGAAGAACGGGACAGCAGTGTCAGTAATTTTGACGTT TGCGGCCCGAAACGAACTTAAATTCTTCCGAGAAGACGCAAACACTCCAG ATCGTGTCTCCTCGACCTGGCACCACCCATTCCTCGACCCCTGGGGCATC AATCGTTCCCACTGTGTGGCTGCTGTCTGCTTTATCTGTCGCGAGGCGAA ATGATGCATGTGTTTGGTGCAATACATTCGATCGGAGTTTTCGATGCTCC GCCGCGATCAGAAATTGTGAAGGCGCGGATCCATTTGTGCAGGGACGTCT GTCCCATAGTCTTCGTGTTGTGCAGCCAACTCGACAAGGTTACCGGCGAC GTGGGAACGCACGAGGAGCAGCAGCAATTCTATGTTTGTGCTGTGCGTTT GGAGCGGGGGGCTGGTGTGAGATGTGTTTCAGCTGTTCGGCCCGAACAAC GGGGCGTTCGAAATTATTAAATGACCGAACAAACTGGTCGAAACAGAATT GGGCGTTTGCTCTGCTGTCTGAGGGCAAGTCAAGGGCAAGTCAAACTTTA CTTCGTACATCATCAAAGTCCAAAACATTTTTCCCGAATCCAACCCCCAG ACTTTGCTAGTCGCAAGCACCCTACAGAAGCCCCACGGTCAGCACATGAG CTTTTTGGCGAACATATGCATTTCCCAAGAACTAAGCGCCTCGAAATCGA ATCTCTGCTGTTTACTTTGCCAATGCTTCTCTACATCCAAAACGACGTTG ACACCGGAACTGTTTTTGTTCTCGTATTCCCGGTGGGTTTCCCTTGAAGT AAGATCATGTCAATTAATATTATCGCCTCGCACATCGGTGTGTCTACGTT GCTCTGCTCCGCGCAGGATCGGTGCGATGAGGTCAATGGGAGCCGCCAAA GCGTGCGTTTTGCCTCTTCTTGTTCGTAGCGGGGCATCGGGCTCGATAGC GACGTATTTGACGATCGACGAAGTTGGCCATGAGGTAAACTGCAGTGGGT TGAAAAATCCGCGGTCAGAACCTGACGCATGGACCAACCGTCATGCCGCC GATGTATCGTTTGGCATGCCGCCGGTGCGTCGTTTGTGATCCATCTCGAA GAAGTGAATTAGTACCGGAAGAGTTGGTTGGCGGTCTTATCTTCAACGTG TCTGTCTTAAGTGCGTCTCCCATCTGTACACGAAGACCATGATCTACACT GCGGTTGGTTGTCGGGGTTACTCTAAGAGTGAGTAGGTCAACGGTCTTTC TCCACGGCGTAGCTGCCTCTGCCCGCTGCCGGTGCTTGCTGCCGCTCTTT GTTCGAGTCTGTTCCACCAGCACCGGTCGGCGAGCAATTGGGGGTAGGTG GGTTCAAAACACAATGCGGCAGAGTTGCCCTTGCGGGGATCTCTCTCTTG CCGACGTTTTGCACGGCGCACTCATTGATTATCCTCGAAATCCTCTGATA CTTGCGCTTGAGTTCGAATCCCGGTGCAGTAACACGATCCGGGATTCTTC TCATGTCATGCGTGAGGGTGGAAAGCGATCAATTCGTGAGTAACCAAAAT TCGAAGGGACGAGGGAAAGGGATGGCTGTACCCTTTCTCGCGATAAAAAC TGAATGTAAGCACCGCAGTGGGAAGTGGAGAAAAAAAAAAAACTCTTGTG TTGACTTCCTACTGTGTGACGCCGGTTGGAGCGTCTACCTACCCGAAATG TGTAGAGTGGCGTCCAATTAAAAGGATGACAACACACACACACACACACA CTCCCCCCCTTCCCAATTTATCTCGCTCTCTCCGATCAACCGAACTGTCT TGCACTGCATCATTCTCCTCTCCCTTTCCATATGTCCCACTTCTGCCGCG TGTGTCGTCGCCGGTATCTGCCGTGTCGCCAGGCTGTGCATGGGCCTCCG GTGGCAGAGCCGATTGGCGCCCGTACTGCACCTGTTCCGTTGAAGACCCC AGCTTCATCTGACTGCTCCGCGAAACGACATGTCCCAGGTTATGATGTGG TGAGTAAGTGGGTGACCACACGTGTATATCGAACGTCGGCTGGCTTGCCC ATTTGTTTTTGTTCGTTCGAGGTTCGTCTCGACCAAAATTGCCCGAAATG TTCGAAGCGATGCATGAAAAACAATTGCCGTCCCCTTTCTAGGTGCACCG CTACAAATCGCGGAGGGTGTCATCAAACGAAGCCGACGGAACGGACCGTC GTAGAAAACGTTGTTAAAAGGCACGCTCGTCTCTCGATTGGACATTGGAT TCAGAGCAACAGGGCCGGTATTATGACTGAAATCAGCCCCTCATCATCGT GTTGCGGGCGTGTAAGGTGGTTAAAAGGAGGCCTCTTAACCGCCGGCTCA ACTGGTTTCCTTAAAGTATTGGCAAAAAATATGAAAAAAAAAAAAACCTC CTCCATGACATGTGGATTATAAGTTTGTTTCCAACACAATCCCTCAAGAC TTCAACCAAAGACGACCCGCCATGTTTCGTTGAAACACGGCGTGTCGAGG CTTCCCTAGCGATTGGACAGGGATGCCGCACGCGTATCACACAGCACTTA GTGTGGTGCCGTACGGTGTGTTGCCGTGATCCATAATTTTCGGGTGGCTC CTATCATGGAGCAATAATAACCTCGCCTCCCGTGCTCGCCGTCAACTTGA TCGTTCGCTATCATGCGCTTGCCGGCCGTTGAGTAGGTCCTGCTCATGGG GCAGTCAAACATGAGCGGCAGGGGGCAAGGCTACGACGAACAACTCGACA GACCGAACAACCCACGCATACAGCAGTGGTCGCGGGATAACCGAATCATC CTCGCGTCCGAGCACCTCGAGCACGACGACTTTTCGATGGTCAGCGAGGA GAGCGTGGGCATGGGAACCGCCTTCGGACGCGCCTACGTGGAAACCCTGC CGGCGCAGCGCAACGTGCTGGTGGTGCCGACAGCCCACGGCGGTACTCGG CTGGTGCACGGTCCCTGGTCCCCGGGCGGTCGCCTGTTCGAAGACGCCGT AACGCGCTTGGCAGCCGCGCTAGCGAGCGACGAGGACGGAGGGAACTGCG TCGCGGGCGTGCTGTGGCACCAAGGGGAGAGCGATGCAGGCAGGCATGTT GATCAAGAGACCTACCAGTCGGCCTGGACGGAAATGATTGACGCACTCAG GTTTCGCGTTCCGGCGGCGGCTCAAGCTCCGGTAGTTCTCGGCGAGTTCT CACAGGTCTGGGTCGAAAACAACGAGGAAATGGCGGCGCCAGTTCTCGCG GCTATTCGAGCGATCCCGGACAGCGTCCCGTTTACTGCGGTGGCACCCTC TGACGGGCTTTCGGCCAACTCAGCAGGGAATGTCCACTTCGATGCGGTGG GTCAGCGTGAGTACGGACAACGATACTTTGACAAGCTTGGCGATGCTATT GGGAACAATGGGGTCCCGGCGACATGATGAGCGTGGGCGGACGGGTGAAC GGAAACGGCGACCGAAGCGGTCACAATAGAATTGTATCATAGCCGCTGTA CATGTGTTTTTAGTGCCCCTGATTGTCATCGCCAGCTATTATACGTATAA TAGAGAGTGTTGGCGAGTACGCAGTTTTCACGTTGATGGGGTGCCGTAGC CCTTGTGCTTCAATCCCGTCTGCGTTTGATGAAGCGTGTCCCATTTTTTG CCGGTGCTGTCCACGGGAAGGATCTAGGTTGTTTCCGGTATTAGCCTCGC CTTCCTCCCGTGGTTGCGAGCGATTTGACGCGAGGAGTGCAGAACTGGGG TCGTTCATTCTTAAGGGGCAATTGCAAGGGACCCGCGTACATTTGTTGTT TGATTTGACGATTTATTGTTTATTTGATATTTTTGTAGAGTGCAGAACTT GGGTCATTCATTCTTATGGGGCAAGGGGAAGAGACCCGCGTATATTTGTT GTTTGATTCGGCGATTTTATTTTGTTGATACTTTTTTGTAACCGTCACCC GGATGAAAGCTGATATAGTCGACATATTATTGTTGTGATTTTTGCATTAG GTACTTAAAAAATACCGACAATACGCATCGGGGTGAGAGCGGTGTGTCAG GTCTTCCGATATATCGGAATTCGGGGTGAGGTTAGACGAATAGATGTTCC CCTCAATTCAAACAGTGACTGATGCTGATCCCGTTCAAAAGTGATACAGT TATTAAATGTTCACCGGTAGAGAGGCTCTCTTTTGGAGTACAGTTTTTCG TCGTTGTGTCGTGGCGTCAACCGAATTGGCAGAGCTGAGGCCGTGCTCGG GATATGCTATCAATAATTACGACGATTGTCTTGGCGCGTCCTATGTATAA TTTGAGTTGATTCGAGTTGCGACGCTCAATACCACACCTCGAGACCAGGG TGACTTGACCTTTTTCTCGCCAACGAATGGCCCAAATTTTCCTGAAACAT AGACTACCACACGAGTTTGCTTTTCGCTTTCTATTACTTTTCCGCGACTT GTCCACGTTATCACTTTTGTTTCATCGTTGTCTTTGTGGTGTTGACGTGC GTTCTGATTGTGAGTTGCTGATTCTGATCATCTTTTCGACATGCATTTTG TGTGTGAGGTTGTTGATTCTGATCACGTTTTCGACGTGCCTCTTGTTTTG GAGTTCTTGATTATGATCACCCTGTCCTCCTCATTTGCGGTTCATTAGTC TGACCTAGTATTCGGACGATTTATGATCGCTTTTTTCGTATCGTTTGCGT TTGGTTCGAATCATCAGGGGGGGCAGTGAGACCATGTTTGTGACTCTGGC TGTTAAGGCGGACATGGTGGCATGACATCGTAGTACGTTGCGTGCACGCT GGGTGTCAAGCCTGGCTCCGGTCCACTTTATATATGGCCGGCCACTTTTG TCTATACCATGTATCTTTCGATTTTTGTTTAATTTTCGCCGAATCTGCTC AGCGTGGGCAGCGAAATTGATTTTGTCAAGAAAAACTCCACCAGTTTATC GAACTGTGGCGCTGGAGATTTTTGCCTTGCATGGCTTTTCTTTCAGTTAG CGAGGTGTACCGATATATTTCTCGTGTTCCATCAAACTTTCTCTCACTCT GGATATACTCAAGTATCACATACAACCGGAGAGAGAGCATATTACATACT GAAGTATATAGGATCCTCCCCATGGAAGTGGCGGTGTTGCTTCTTGCGTG CTACTTGCATACAGCAGTATCCCTTTGTTTGAAGCATCCTGTAAAACTAA TCAAACAACTTTTGCGTAGGTGACCCCCAAAAAAGTTTGGTGTAGCTTTA GACTGTCATCTGTCCCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:287284..292801+

>mRNA_P-littoralis_Contig148.62.4 ID=mRNA_P-littoralis_Contig148.62.4|Name=mRNA_P-littoralis_Contig148.62.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1197bp|location=Sequence derived from alignment at P-littoralis_Contig148:287284..292801+ (Pylaiella littoralis U1_48)
ATGAGCTTTTTGGCGAACATATGCATTTCCCAAGAACTAAGCGCCTCGAA
ATCGAATCTCTGCTGTTTACTTTGCCAATGCTTCTCTACATCCAAAACGA
CGTTGACACCGGAACTGTTTTTGTTCTCGTATTCCCGGTGGGTTTCCCTT
GAAGTAAGATCATGTCAATTAATATTATCGCCTCGCACATCGGTGTGTCT
ACGTTGCTCTGCTCCGCGCAGGATCGGTGCGATGAGGTCAATGGGAGCCG
CCAAAGCGTGCGTTTTGCCTCTTCTTGTTCGTAGCGGGGCATCGGGCTCG
ATAGCGACGTATTTGACGATCGACGAAGTTGGCCATGAGGCTGTGCATGG
GCCTCCGGTGGCAGAGCCGATTGGCGCCCGTACTGCACCTGTTCCGTTGA
AGACCCCAGCTTCATCTGACTGCTCCGCGAAACGACATGTCCCAGGTTAT
GATGTGGTCCTGCTCATGGGGCAGTCAAACATGAGCGGCAGGGGGCAAGG
CTACGACGAACAACTCGACAGACCGAACAACCCACGCATACAGCAGTGGT
CGCGGGATAACCGAATCATCCTCGCGTCCGAGCACCTCGAGCACGACGAC
TTTTCGATGGTCAGCGAGGAGAGCGTGGGCATGGGAACCGCCTTCGGACG
CGCCTACGTGGAAACCCTGCCGGCGCAGCGCAACGTGCTGGTGGTGCCGA
CAGCCCACGGCGGTACTCGGCTGGTGCACGGTCCCTGGTCCCCGGGCGGT
CGCCTGTTCGAAGACGCCGTAACGCGCTTGGCAGCCGCGCTAGCGAGCGA
CGAGGACGGAGGGAACTGCGTCGCGGGCGTGCTGTGGCACCAAGGGGAGA
GCGATGCAGGCAGGCATGTTGATCAAGAGACCTACCAGTCGGCCTGGACG
GAAATGATTGACGCACTCAGGTTTCGCGTTCCGGCGGCGGCTCAAGCTCC
GGTAGTTCTCGGCGAGTTCTCACAGGTCTGGGTCGAAAACAACGAGGAAA
TGGCGGCGCCAGTTCTCGCGGCTATTCGAGCGATCCCGGACAGCGTCCCG
TTTACTGCGGTGGCACCCTCTGACGGGCTTTCGGCCAACTCAGCAGGGAA
TGTCCACTTCGATGCGGTGGGTCAGCGTGAGTACGGACAACGATACTTTG
ACAAGCTTGGCGATGCTATTGGGAACAATGGGGTCCCGGCGACATGA
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