mRNA_P-littoralis_Contig148.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.31.1
Unique NamemRNA_P-littoralis_Contig148.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig148.31.1 vs. uniprot
Match: A0A6H5JXV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV4_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.590e-26
Identity = 91/212 (42.92%), Postives = 115/212 (54.25%), Query Frame = 3
Query:    3 QVARKKSYRVRLLTAVDLADGSTREHKWNSAAIKYPKG*RSARDWVAEVTFARAWRPSR-ERVGGDSSMDADVNMDANEGPAPSREKRPRDCPQTSDP-------PPPEHRGGAREGSGRPKGSFGPKRMRTLLHQCEAFLRDGMAQSAHDATRDTSAAKMLAAAVAVEKNWAELTRRPYLKSQANKGVGRKNAIRKLAKKRSQWEKAALAA 614
            QV   K YR+ +    DL   +TR   W +  IKYPK  + ARDW AE   A  WRPS  +R    S   + V       PAP R KRPRDC Q            PP  R  A  G+GRPKGSFG KR+  ++   +A +  G  + A    RD S A ML AAV V+K+  ++ R  +LK Q+++G+ R  A+RKLAK RSQ EKAALAA
Sbjct:   29 QVQGAKQYRLEV--TADLGGVTTR---WRTDCIKYPKSNKKARDWAAEAALAAVWRPSHCDRYATLSKDTSKVE------PAPPRTKRPRDCCQQDLSCGRDHCHTPPAQRA-APAGAGRPKGSFGRKRLHEMMATYKARVEQGQLEFADMHVRDLSTA-MLDAAVEVDKH-EDVWRPAFLKRQSDRGMRRAEALRKLAKHRSQLEKAALAA 226          
BLAST of mRNA_P-littoralis_Contig148.31.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 5.780e-26
Identity = 90/201 (44.78%), Postives = 109/201 (54.23%), Query Frame = 3
Query:   18 KSYRVRLLTAVDLADGSTREHKWNSAAIKYPKG*RSARDWVAEVTFARAWRPSRERVGGDSSMDADVNMDANEGPAPSREKRPRDCPQ---TSDPPPPEHRGGAREGSGRPKGSFGPKRMRTLLHQCEAFLRDGMAQSAHDATRDTSAAKMLAAAVAVEKNWAELTRRPYLKSQANKGVGRKNAIRKLAKKRSQWEKAALA 611
            K YRV L   V    GS  E +W S  IK PKG  + RDW AE  FA  WRPS       +    D +    E  AP REKRPRDC     +++  P    GGAR GSGRPKGS+G KR+R    Q   ++  G    A  A+RD     ML A   V ++  E+    +LK Q+N+GVGRK A+RKLAK RSQ EKAA A
Sbjct:   42 KKYRVELTAHVH---GS--EQRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPS---FSSGNVPHTDASAGEAEA-APPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQHQ-EVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAA 231          
BLAST of mRNA_P-littoralis_Contig148.31.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 8.280e-26
Identity = 90/201 (44.78%), Postives = 109/201 (54.23%), Query Frame = 3
Query:   18 KSYRVRLLTAVDLADGSTREHKWNSAAIKYPKG*RSARDWVAEVTFARAWRPSRERVGGDSSMDADVNMDANEGPAPSREKRPRDCPQ---TSDPPPPEHRGGAREGSGRPKGSFGPKRMRTLLHQCEAFLRDGMAQSAHDATRDTSAAKMLAAAVAVEKNWAELTRRPYLKSQANKGVGRKNAIRKLAKKRSQWEKAALA 611
            K YRV L   V    GS  E +W S  IK PKG  + RDW AE  FA  WRPS       +    D +    E  AP REKRPRDC     +++  P    GGAR GSGRPKGS+G KR+R    Q   ++  G    A  A+RD     ML A   V ++  E+    +LK Q+N+GVGRK A+RKLAK RSQ EKAA A
Sbjct:   42 KKYRVELTAHVH---GS--EQRWCSPYIKCPKGRNTGRDWAAEDRFAATWRPS---FSSGNVPHTDASAGEAEA-APPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQHQ-EVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAA 231          
BLAST of mRNA_P-littoralis_Contig148.31.1 vs. uniprot
Match: A0A6H5JPF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPF3_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 6.280e-25
Identity = 81/184 (44.02%), Postives = 103/184 (55.98%), Query Frame = 3
Query:    3 QVARKKSYRVRLLTAVDLADGSTREHKWNSAAIKYPKG*RSARDWVAEVTFARAWRPSRERVGGDSSMDADVNMDANEGPAPSREKRPRDCPQTSD--PPPPEHRGGAREGSGRPKGSFGPKRMRTLLHQCEAFLRDGMAQSAHDATRDTSAAKMLAAAVAVEKNWAELTRRP-YLKSQANKGV 545
            QV   K YR++L    DL+DGS+    W S  IKYPKG   ARDW AE  +A AWRPS        S + D    +N+ P P R KRPRDC   ++   PPP+  G   EG+GRPKG+FG KR+R +L +    +  G         RD S+A ML AA  VEK+  E   RP +LK Q+N+GV
Sbjct:   29 QVKSAKKYRLQL--TADLSDGSS--SMWRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTE-DARRGSNDTPPPPRGKRPRDCQPAAEILTPPPKRPG--YEGAGRPKGTFGRKRLRAMLDRYRERIELGQVTCGRLEVRDLSSA-MLDAAQEVEKH--EQDWRPAFLKRQSNRGV 202          
BLAST of mRNA_P-littoralis_Contig148.31.1 vs. uniprot
Match: A0A6H5JEX5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX5_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.900e-22
Identity = 80/184 (43.48%), Postives = 102/184 (55.43%), Query Frame = 3
Query:    3 QVARKKSYRVRLLTAVDLADGSTREHKWNSAAIKYPKG*RSARDWVAEVTFARAWRPSRERVGGDSSMDADVNMDANEGPAPSREKRPRDCPQTSD--PPPPEHRGGAREGSGRPKGSFGPKRMRTLLHQCEAFLRDGMAQSAHDATRDTSAAKMLAAAVAVEKNWAELTRRP-YLKSQANKGV 545
            QV   K YR++L    DL+DGS+    W S  IKYPKG   ARDW AE  +A AWRPS        S + D    +N+ P P R KRPRDC   ++   PPP+  G   EG+GRPKG+FG KR+R +L +    +  G         RD S+A ML AA  VEK+  E   RP +LK Q+N+ V
Sbjct:   29 QVKSAKKYRLQL--TADLSDGSS--SMWRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTE-DARRGSNDTPPPPRGKRPRDCQPAAEILTPPPKRPG--YEGAGRPKGTFGRKRLRAMLDRYRERIELGQVTCGRLEVRDLSSA-MLDAAQEVEKH--EQDWRPAFLKRQSNRDV 202          
BLAST of mRNA_P-littoralis_Contig148.31.1 vs. uniprot
Match: D7G0B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B2_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.630e-20
Identity = 65/138 (47.10%), Postives = 78/138 (56.52%), Query Frame = 3
Query:   84 WNSAAIKYPKG*RSARDWVAEVTFARAWRPSRERVGGDSSMDADVNMDANEGPA-PSREKRPRDCPQTSDP--PPPEHRGGAREGSGRPKGSFGPKRMRTLLHQCEAFLRDGMAQSAHDATRDTSAAKMLAAAVAVEK 488
            W S  + YP+  + ARDWVAE  FA+AWRPS    G      AD  + + + PA P REKRPRDC  T      PP  R  AREG GRPKGSFG KR+R LLHQ +  +  G    A    RD  +A MLAA+   +K
Sbjct:    8 WYSEYMGYPESNKKARDWVAEENFAKAWRPSHSS-GSAVLSKADARLRSEDKPALPPREKRPRDCQPTCSAIHTPPAKRA-AREGEGRPKGSFGRKRLRALLHQYKVQVEQGQLTFARLQLRDLGSA-MLAASQEADK 142          
BLAST of mRNA_P-littoralis_Contig148.31.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.850e-17
Identity = 63/128 (49.22%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  246 PSREKRPRDCPQ------TSDPPPPEHRGGAREGSGRPKGSFGPKRMRTLLHQCEAFLRDGMAQSAHDATRDTSAAKMLAAAVAVEKNWAELTRRPYLKSQANKGVGRKNAIRKLAKKRSQWEKAALA 611
            P REKR RDC        T D PP + RGGAR G+GRPKGS+G KR+R    Q   +L  G  Q A   +RD   A   A   A ++   E+ R  +LK Q+N+GVGRK A+RKLAK RSQ EKAA+A
Sbjct:  113 PPREKRLRDCQHRLCCGITGDAPPGK-RGGARPGAGRPKGSYGRKRLRQAAQQLNYYLERGQLQCAQMVSRDLPGAMSYAVKEAHQQE--EVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVA 237          
BLAST of mRNA_P-littoralis_Contig148.31.1 vs. uniprot
Match: A0A6H5KLL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.890e-17
Identity = 78/204 (38.24%), Postives = 99/204 (48.53%), Query Frame = 3
Query:   33 RLLTAVDLADGSTREHKWNSAAIKYPKG*RSARDWVAEVTFARAWRPSRERVGGDSSMDADVNMDANE-GPAPSREKRPRDC-PQTSDPPPPEHRGGAREGSGRPKGSFGPKRMRTLLH--------QCEAFLRDGMAQSAHDATRDTSAAKMLAAAVAVEKNWAELTRRPYLKSQANKGVGRKNAIRKLAKKRSQWEKAALAA 614
            RL    DL   +TR   W +  IKYPK  + ARDW AE   A  WRPS           A ++ D ++ GPAP R KRPRDC P T                           ++++LH          +A +  G  + A    RD S A ML AAV V+K+   + R  +LK Q+N+GV R  A+RKLAK RSQ EKAALAA
Sbjct:   24 RLEVTADLGGVTTR---WRTDCIKYPKSNKKARDWAAEAALAAVWRPSH------CDRYATLSKDTSKFGPAPPRFKRPRDCCPATH-------------------------HLQSVLHLQGHEMMATYKARVEQGQLEFADMHVRDLSTA-MLNAAVEVDKH-EYVWRTAFLKRQSNRGVRRAEALRKLAKHRSQLEKAALAA 191          
BLAST of mRNA_P-littoralis_Contig148.31.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.000e-16
Identity = 58/126 (46.03%), Postives = 76/126 (60.32%), Query Frame = 3
Query:  246 PSREKRPRDCPQTSDPP---PPEHRGGAREGSGRPKGSFGPKRMRTLLHQCEAFLRDGMAQSAHDATRDTSAAKMLAAAVAVEKNWAELTRRP-YLKSQANKGVGRKNAIRKLAKKRSQWEKAALA 611
            P REKRPRDC   ++     PP  RGGAR G+GRPKGS+G  R+R    Q   +L  G  Q A   +RD   A + A   A ++   E+  RP +LK Q+N+G+GRK A+RKLAK +SQ +K A A
Sbjct:   28 PPREKRPRDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRNRLRQAAQQLNGYLERGQLQCAQMVSRDLPGAMLDAVKEAHQQ---EVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAA 150          
BLAST of mRNA_P-littoralis_Contig148.31.1 vs. uniprot
Match: A0A6H5K534_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K534_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.060e-14
Identity = 74/197 (37.56%), Postives = 94/197 (47.72%), Query Frame = 3
Query:   18 KSYRVRLLTAVDLADGSTREHKWNSAAIKYPKG*RSARDWVAEVTFARAWRPSRERVGGDSSMDADVNMDANEGPAPSREKRPRDCPQTSDPP---PPEHRGGAREGSGRPKGSFGPKRMRTLLHQCEAFLRDGMAQSAHDATRDTSAAKMLAAAVAVEKNWAELTRRPYLKSQANKGVGRKNAIRKLAKKRSQWEK 599
            K YRV+L   V    GS    +W S   K+PKG  + RDW AE  +A  WRP        +    DV     E  AP REK   DC   ++     PP  RGGAR G+GRPKGS+G KR+R    Q    L  G  Q A   +RD   A  ++ AV       E  R  +LK Q+N+G+  + A    A  RS WE+
Sbjct:   51 KKYRVQLTAQVH---GS--RQRWCSPYNKFPKGRTTGRDWAAEDRWAATWRPF---FCSGNVPHNDVRAREAEA-APPREKWQPDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRKRLRQAAQQLNDDLERGKLQCAQMVSRDLPGA--MSDAVKEAHQQEEACRPAFLKRQSNRGL--EKAAAASAACRSGWER 234          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JXV4_9PHAE3.590e-2642.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS5_9PHAE5.780e-2644.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE8.280e-2644.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JPF3_9PHAE6.280e-2544.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JEX5_9PHAE5.900e-2243.48Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
D7G0B2_ECTSI1.630e-2047.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVH8_9PHAE2.850e-1749.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLL8_9PHAE2.890e-1738.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE6.000e-1646.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K534_9PHAE1.060e-1437.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:120630..121246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size619
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789697.679095-CDS-P-littoralis_Contig148:120629..1210431680789697.679095-CDS-P-littoralis_Contig148:120629..121043Pylaiella littoralis U1_48CDSP-littoralis_Contig148 120630..121043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789697.6901405-UTR-P-littoralis_Contig148:121043..1212461680789697.6901405-UTR-P-littoralis_Contig148:121043..121246Pylaiella littoralis U1_48UTRP-littoralis_Contig148 121044..121246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.31.1prot_P-littoralis_Contig148.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 120630..121043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.31.1

>prot_P-littoralis_Contig148.31.1 ID=prot_P-littoralis_Contig148.31.1|Name=mRNA_P-littoralis_Contig148.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
MDADVNMDANEGPAPSREKRPRDCPQTSDPPPPEHRGGAREGSGRPKGSF
GPKRMRTLLHQCEAFLRDGMAQSAHDATRDTSAAKMLAAAVAVEKNWAEL
TRRPYLKSQANKGVGRKNAIRKLAKKRSQWEKAALAAE
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mRNA from alignment at P-littoralis_Contig148:120630..121246-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.31.1 ID=mRNA_P-littoralis_Contig148.31.1|Name=mRNA_P-littoralis_Contig148.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=617bp|location=Sequence derived from alignment at P-littoralis_Contig148:120630..121246- (Pylaiella littoralis U1_48)
CCCAAGTGGCGCGGAAAAAATCGTATCGTGTAAGGCTTCTTACAGCAGTA GATCTGGCCGATGGGTCAACCAGAGAACACAAGTGGAATAGCGCAGCAAT CAAGTATCCCAAGGGCTAAAGATCTGCTCGCGACTGGGTGGCCGAGGTGA CCTTCGCACGAGCATGGCGGCCAAGCCGTGAGCGTGTGGGTGGTGACAGC AGCATGGATGCTGATGTCAACATGGATGCAAACGAAGGGCCTGCTCCTTC CCGAGAAAAGCGGCCACGGGACTGTCCGCAAACATCGGATCCACCACCTC CTGAACACCGTGGTGGAGCACGCGAAGGTAGCGGCAGGCCGAAGGGAAGC TTCGGCCCGAAGAGGATGCGGACGCTCCTACACCAGTGTGAAGCGTTTCT TCGAGACGGCATGGCTCAATCTGCGCACGACGCCACGCGGGATACTTCTG CTGCGAAGATGCTTGCCGCGGCGGTTGCGGTGGAAAAGAATTGGGCGGAG TTGACAAGAAGACCGTACCTCAAAAGTCAAGCCAACAAGGGCGTGGGTAG GAAGAATGCTATCCGGAAGCTGGCGAAGAAGAGGTCACAGTGGGAGAAAG CAGCACTAGCAGCCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:120630..121246-

>mRNA_P-littoralis_Contig148.31.1 ID=mRNA_P-littoralis_Contig148.31.1|Name=mRNA_P-littoralis_Contig148.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig148:120630..121246- (Pylaiella littoralis U1_48)
ATGGATGCTGATGTCAACATGGATGCAAACGAAGGGCCTGCTCCTTCCCG
AGAAAAGCGGCCACGGGACTGTCCGCAAACATCGGATCCACCACCTCCTG
AACACCGTGGTGGAGCACGCGAAGGTAGCGGCAGGCCGAAGGGAAGCTTC
GGCCCGAAGAGGATGCGGACGCTCCTACACCAGTGTGAAGCGTTTCTTCG
AGACGGCATGGCTCAATCTGCGCACGACGCCACGCGGGATACTTCTGCTG
CGAAGATGCTTGCCGCGGCGGTTGCGGTGGAAAAGAATTGGGCGGAGTTG
ACAAGAAGACCGTACCTCAAAAGTCAAGCCAACAAGGGCGTGGGTAGGAA
GAATGCTATCCGGAAGCTGGCGAAGAAGAGGTCACAGTGGGAGAAAGCAG
CACTAGCAGCCGAG
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