mRNA_P-littoralis_Contig148.16.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.16.2
Unique NamemRNA_P-littoralis_Contig148.16.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig148.16.2 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 1.380e-121
Identity = 182/218 (83.49%), Postives = 197/218 (90.37%), Query Frame = 2 
Query:  179 SAQMFLATAXXXXXXXXXXXAPIAVRSATPVSSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGADPSDIKKWREAEIKHGRVAMLAALGVLVAEEYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPANILG 832
            + Q+FL +A           AP+AVRSA P SSSS+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGADP+DIKKWREAEIKHGRVAMLA+LGVLVAE+YHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTI TAF+TPSAVTGEGGLKEDY PGDLGFDPL +KP+DE AL+VM+TKELNNGRLAMIGIAGMLVQEL+NPA+ILG
Sbjct:    3 ATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_P-littoralis_Contig148.16.2 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 2.030e-113
Identity = 172/221 (77.83%), Postives = 190/221 (85.97%), Query Frame = 2 
Query:  170 MSTSAQMFLATAXXXXXXXXXXXAPIAVRSATPVSSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGADPSDIKKWREAEIKHGRVAMLAALGVLVAEEYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPANILG 832
            M  S+ MFL TA           AP+AVRSA P SS+S+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA+P +IK WREAEIKHGRVAMLA +GV+VAE+YHPLFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIT A+  PS VTGEGGL+++YSPGDLGFDPL +KP+D+  LE MQTKELNNGRLAMIGIAGMLVQELVNPA+ILG
Sbjct:    1 MVASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_P-littoralis_Contig148.16.2 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 9.060e-113
Identity = 173/217 (79.72%), Postives = 188/217 (86.64%), Query Frame = 2 
Query:  179 SAQMFLATAXXXXXXXXXXXAPIAVRSATPVSSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGADPSDIKKWREAEIKHGRVAMLAALGVLVAEEYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPANIL 829
            ++QMFL TA           AP+AVRSA P S++S+LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGA P DIKKWREAEIKHGRVAMLA+LG+LVAEEYHPLFMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP  E AL+VM+TKELNNGRLAMIGIAGML QELVN  +IL
Sbjct:    3 ASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_P-littoralis_Contig148.16.2 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 1.060e-98
Identity = 155/221 (70.14%), Postives = 180/221 (81.45%), Query Frame = 2 
Query:  170 MSTSAQMFLATAXXXXXXXXXXXAPIAVRSATPVSSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGADPSDIKKWREAEIKHGRVAMLAALGVLVAEEYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPANILG 832
            M+ S+ MFL TA            P+AVRSA P SS+S+LKMSAG+DY+ATLPGA   +GKIFD L L+DGADP +IK WREAEIKHGRVAMLA +GV+VAE+YHP FMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI  A+  PS VTGEGGL+++YSPGDLGFDP  IKP+D+  LE MQ KELNNGRLAMIGI GMLVQELVN  +ILG
Sbjct:    1 MAASSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
[Close]
BLAST of mRNA_P-littoralis_Contig148.16.2 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 4.000e-95
Identity = 141/161 (87.58%), Postives = 151/161 (93.79%), Query Frame = 2 
Query:  350 KIFDPLGLSDGADPSDIKKWREAEIKHGRVAMLAALGVLVAEEYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPANILG 832
            +IFDPLGLSDGA P DIKKWREAEIKHGRVAMLA+LGV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAF+EYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP DE AL+VM+TKELNNGRLAMIGIAGML QELVNPA+ILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_P-littoralis_Contig148.16.2 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 1.300e-92
Identity = 142/161 (88.20%), Postives = 151/161 (93.79%), Query Frame = 2 
Query:  350 KIFDPLGLSDGADPSDIKKWREAEIKHGRVAMLAALGVLVAEEYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPANILG 832
            +IFDPLGLSDGA P DIKKWREAEIKHGRVAMLA+LGV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP DE AL+VM+TKELNNGRLAMIGIAGML QELVNPA+ILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_P-littoralis_Contig148.16.2 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 2.230e-90
Identity = 153/218 (70.18%), Postives = 163/218 (74.77%), Query Frame = 2 
Query:  179 SAQMFLATAXXXXXXXXXXXAPIAVRSATPVSSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGADPSDIKKWREAEIKHGRVAMLAALGVLVAEEYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPANILG 832
            ++QMF+ TA           AP+AVRS T   SS  LKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGA P DIKKWREAEIKHGRVAMLA+LGV+VAE                            FW FSLLGMAFIEYNTI TAFDTPSAVTGEGGLKEDY PGDLGFDPL +KP DE AL+VM+TKELNNGRLAMIGIAGML QELVNPA+ILG
Sbjct:    3 ASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_P-littoralis_Contig148.16.2 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 2.180e-86
Identity = 131/160 (81.88%), Postives = 143/160 (89.38%), Query Frame = 2 
Query:  350 KIFDPLGLSDGADPSDIKKWREAEIKHGRVAMLAALGVLVAEEYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPANIL 829
            KIFDPLGL+DGA+  DIK WREAEIKHGRVAMLA+LGVLVAEEYHP FMGPDYIGPAVDHFQEISA++PEFW FSLL +A IEYNTIT A+  PS VTGEGGL+++YSPGDLGFDPL +KP D+ ALE MQTKELNNGRLAMIGIAG LVQELVNP NIL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_P-littoralis_Contig148.16.2 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 1.560e-83
Identity = 143/254 (56.30%), Postives = 183/254 (72.05%), Query Frame = 2 
Query:   89 PASTQ--HYAHL----LLHNSPRSSSTHLSIKMMSTSAQMFLATAXXXXXXXXXXXAPIAVRSATPVSSSSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGADPSDIKKWREAEIKHGRVAMLAALGVLVAEEYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPANILG 832
            P+S Q  H+A L    LLH    ++     + + ST A + +A+             P  + SA P S+++  +MSAGSDYV+TLPGAPF+DGK++DP+GLS  ADP DIKKWREAEIKHGRVAMLA++GVLVAE +HPLF+GPDYIGPA+ HF+EI+A++P+FW  +LL +A++EY  I   F     VTGEGG++ DY PGDLGFDPLG+ P+DE  L VM+TKELN+GRLAMIGI GM+VQELV P  I G
Sbjct:   21 PSSLQQVHFARLAALRLLHTETSNAILKRCVMVTSTGALVGMASWCFASCEAFIVPTPTTL-SARPTSTAA--RMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_P-littoralis_Contig148.16.2 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.090e-70
Identity = 126/222 (56.76%), Postives = 160/222 (72.07%), Query Frame = 2 
Query:  179 SAQMFLATAXXXXXXXXXXXAPIAV--RSATPVSSSSSLKMSAGSDYVATLPGAPF---SDGKIFDPLGLSDGADPSDIKKWREAEIKHGRVAMLAALGVLVAEEYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITTAFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGRLAMIGIAGMLVQELVNPANIL 829
            ++Q+FL TA           APIA    S   V++SS+ KM+AGSDY A+LPGAPF   ++GK FDP GL+   DP  IKKWREAE+KHGRV+MLAA+G+LV+E +HPLFMGP YIGPAV+H Q+I+  YP FWV SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPLG+ P+D E   ++Q++EL+ GR AMIG+ GM+VQE+V+   IL
Sbjct:    3 TSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.16.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI1.380e-12183.49Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI2.030e-11377.83Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI9.060e-11379.72Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S0_ECTSI1.060e-9870.14Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI4.000e-9587.58Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE1.300e-9288.20LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5K8D0_9PHAE2.230e-9070.18LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7Q7_ECTSI2.180e-8681.88Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI1.560e-8356.30Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7FQG7_ECTSI1.090e-7056.76Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:53834..59327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7Q6
PFAMsChloroa_b-bind
Model size1619
Max annot lvl2759|Eukaryota
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
Exons4
Evalue6.18e-133
EggNOG OGs2BEWM@1|root,2S15M@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
Cds size669
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.16.2prot_P-littoralis_Contig148.16.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 54618..59161 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789697.0283945-UTR-P-littoralis_Contig148:53833..546171680789697.0283945-UTR-P-littoralis_Contig148:53833..54617Pylaiella littoralis U1_48UTRP-littoralis_Contig148 53834..54617 -
1680789697.079539-UTR-P-littoralis_Contig148:59161..593271680789697.079539-UTR-P-littoralis_Contig148:59161..59327Pylaiella littoralis U1_48UTRP-littoralis_Contig148 59162..59327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789697.0381851-CDS-P-littoralis_Contig148:54617..548931680789697.0381851-CDS-P-littoralis_Contig148:54617..54893Pylaiella littoralis U1_48CDSP-littoralis_Contig148 54618..54893 -
1680789697.0465953-CDS-P-littoralis_Contig148:58250..583341680789697.0465953-CDS-P-littoralis_Contig148:58250..58334Pylaiella littoralis U1_48CDSP-littoralis_Contig148 58251..58334 -
1680789697.0549626-CDS-P-littoralis_Contig148:58528..586511680789697.0549626-CDS-P-littoralis_Contig148:58528..58651Pylaiella littoralis U1_48CDSP-littoralis_Contig148 58529..58651 -
1680789697.0694604-CDS-P-littoralis_Contig148:58975..591611680789697.0694604-CDS-P-littoralis_Contig148:58975..59161Pylaiella littoralis U1_48CDSP-littoralis_Contig148 58976..59161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.16.2

>prot_P-littoralis_Contig148.16.2 ID=prot_P-littoralis_Contig148.16.2|Name=mRNA_P-littoralis_Contig148.16.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp
MMSTSAQMFLATAAALIASSAAFIAPIAVRSATPVSSSSSLKMSAGSDYV
ATLPGAPFSDGKIFDPLGLSDGADPSDIKKWREAEIKHGRVAMLAALGVL
VAEEYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITT
AFDTPSAVTGEGGLKEDYSPGDLGFDPLGIKPQDEEALEVMQTKELNNGR
LAMIGIAGMLVQELVNPANILG*
back to top

mRNA from alignment at P-littoralis_Contig148:53834..59327-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.16.2 ID=mRNA_P-littoralis_Contig148.16.2|Name=mRNA_P-littoralis_Contig148.16.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5494bp|location=Sequence derived from alignment at P-littoralis_Contig148:53834..59327- (Pylaiella littoralis U1_48)
CACATACGTATGGAGTTTTGGCGTGTGACCGTAGTCAGCCTTTCTCTGCC
TCAGTTGGCCCTCCGATATTACGCCGCCACACCCGCACCCCGCCAGTACA
CAACATTACGCGCACCTTCTTCTACACAACAGCCCACGCAGCTCATCAAC
ACACCTATCCATCAAGATGATGTCCACCTCCGCCCAGATGTTCCTCGCCA
CCGCTGCCGCCCTCATCGCGTCCTCGGCCGCGTTCATCGCGCCGATAGCA
GTGCGATCCGCGACGCCTGTATCTTCCTCGTCTAGCCTCAAGATGAGCGC
CGGCTCCGACTACGTCGCGACTCTGCCCGGCGCTCCCTTTTCCGACGGCA
AGGTGAACGCACAAACGCAGCCCCACTCCTTGCGATGTTCGTCCTTCAGT
GGCGAAGGAAAAAAAAGCCGTACTGTCTGGATGTTCCGAAGGTCCATGCA
GCGAGTTGTATTCGAGGGCAACGACCTCGGCCCTTCTTTTCCGTTCATCA
TATTATACTCTTTTACACACTGTAATGCGCGAACCTTCACCCATTTGACC
CATCTCTGTTCCTGGTCTCGCTAATGGGTACGGTAGTATTCAACAGCGCT
GAGCGGCCGTCTCACTTGCCTTTCGTTTGTCCGTGCTCAACGACTGCTGG
TGTCTTTGTTCTTCGACACACTCCAGATCTTCGACCCCCTCGGCCTCTCC
GACGGCGCTGACCCCAGCGACATCAAGAAGTGGCGCGAGGCCGAGATCAA
GCACGGGCGCGTGGCCATGCTCGCGGCGCTCGGTGTCCTCGTGGCAGAGG
TAGGGGCCCACGCGTTTGTGACACCAGCAGTTATTCGCGAAGTGGTGCGG
AACGCAATTGAAAGGAAACTTCAGAGCAAGTAATTACCAAGTACGAAGTA
ATGCAAAGTTGAACCTAGTGTCGCTCATACTTCATCTCCTCGTCCCCTCG
TGTTGCCAATGTGTATTTTCCGTTATCCACGTTCGTTCTGCAGGAGTACC
ACCCGCTGTTTATGGGCCCCGACTACATCGGCCCCGCGGTGGACCACTTC
CAAGAGATCTCCGCTCAGTACCCCGAGGTAAGACACGGAGATGAAAAATA
TTTTTCCCTTTAAGTCCCGAACTGCTTGGTGTTCGTACACCAGGTGGTGA
TCTCTGCTGGCGTATATCTAGGTGTATGGAACATTGACGGAGTCGACCAA
TTCTCTGTACGTGTCACGCACAGGAACTCACGTACAGAACGTAGCTGTTC
GTTGTCAACAGGAATTGATGTGCACGCTAACAATTTTCTTGAGGAACACC
CAACCCTTTTTGTCCTTCAGAGTAACATGTGTGTGTGTGTTTTCATCCCT
TTAATTGGACGCCACTATGCGTCTTTCGGGTAGGCTGACGCTCCAACTGG
GGTCACACAGGGGGAAGCCAACACAGGAGTTTTTTTTTTCTCCATTTCCC
TCTGCGGTGCTTGCCTCGTTTTTGGTTGAGCTTTTATCGCGAAAAAGGGG
ACAACAATCCCTTTCCCTCGTCGATCGTACGATCGAATATTTGTATACTC
ACGAATTAATCGTTTTCCACTTTCACGCGCATTGTAAGAAGAAACCCCAG
ATTGTGCTACTGCACTGGGATTCGATCTCACGCGTGAATGTCAGAAAGGT
TACGTGGATTACCAACTGAACCACCGGGGCGACCGACATCATTCACCTGG
TATAAAAATTGTCTCAATTTCAAGAGAAATACCGATTAGAGTCCTCAAAC
ATGATTTCTGATATCATACCTCTGCCGAACCTTTTCCTGGAAATAGACGG
GCGATGAAAGTTCTCTCTTTCATCCGAAATTTGAAAAAGGCCCCCTCTTG
TGGTGATGCTGTTAACAATTGGAATCCAAGTGTTTTACATGAGGAGTCGG
AATCCATATTCCTGGACTGCAAAATAATCCTATATTGCGGGGGTCGTTTT
CGGTCGATACCGGAAAATATTTTCCATTTCCTCGGGTTCCAATCGACTCG
CTTGGAATCTGCCCCCGAATTCCAAGCCAAATTACCACGGATTTTAACCC
TTGTTGTACTGGGCTCTTCATAGGAGCCTGGCCGAGTAGCCTGCCTTTTT
TTTTCTCATCGGCCAGAAAGGTTCCTTTTCGCACAGAGTAGACAGTCCTG
AGCAGAACATAAGTCAATCTCGCCGCTTTCTCCAGTTCATATCCGGTTGC
GAAGTACAGCAGCACACCCCCACAGCACGAACCAAATACAAGCAGGGGCC
GCGACAAAGGTCCGCGACGGCCTAGATCGATTGGTCTGGAAACTAGAAAG
GTCGATCGGCCGTTTCCCTGTCGCCGACAGAGCTGGGAACTTGGATCCCG
GTGCTGCTGTGTATCAGCTGTTGTCTTTTTTCAGTATATATTTATATATT
TGCACATATTTTCCCTCTTGAAGGTTTTTCTGCATATGCACATCTCTGAG
CCCCTCGAGGCGCAGGCCTTCGGCCTCTCTAGCCCACATAGACTGCTGCT
GCTGCTGCTGCCGCTATCCGCGTGCTGTGAGGCACTATGCCAACGGCTTC
CTCTGCGAAGGACGCACACCATGTCTATCCTGCCCGCGGTTGATGCTGCG
GCCTACACGGCGGGTAACAAGACCGCCTGCTACGACCAACTTGTTTCGTT
CATCACAGCCTTGCCTGATGGAGAAGATCCCCGCATCCAGTAGTCCGGGC
CGAATAATAAGAAAAAAAATAAAATGCTCAATTCTGATGCACAATCCTAC
CCTCGCTAAGACTCAGGAGGATTAAGTCGGCATCCGTCGCGCGCGTGGCC
ACGAGGTTACGCCGCAGTGGTTTACATCCCAACACAAGTACGAATACACA
CACGCGAGCACTCAAACAAACGTGCCAGGTGAAGTTCTTAAGCCACGTGT
GACACTGACCGTGGTGACTTCACGCTTGTCGCTTAGCGCCATCAGCACCA
GTTTTTCAAAAATTGCCCTACCCGCCCGCCGTCCAACCGATAACCCCATC
TGATTTCCAATCGCCGTCCAGAATTTCCTATTTTCCCATAAGTCAACACT
AGCCTGATTATCCAACTTGAAAAGTCATTTTTGGAAAACTCTTTTTCAGC
TCTGGTAGGGTTTGAATGAGGGGGTCAAAACGCCGAACCAAAATAGCGTT
GACCGTCAAAAATTAAGAAACAGCCTCAGCACACAATTTCCTGCGCGCGC
TCTCATGTCGTAAATATCAGGTCACGTCCATGTGTTCGCGTCATCAACCA
CACTTGACTTGACAGCACAAACATGACAGACCCACCGTCCTCTTCGGTAG
CATAACACACGAATCCTCTGGACTGTAGAAGTTGTAGTGGAGGAAGCTAC
ATCAGTCAAGGAACATCGGACTGCCGTCGCACAGAGCACCACAACAAAAA
TTTTGTGTCTTTTCTCCTGTCCAGACTAATATTAGAGCGCCGAGCCCCAA
TGCGCACAACACACGAACTGCTGCCGTAGAAGCAGCACAATTTGTCGCCT
CTTTTACAGCAGCAGCGGCAAAGATTGGTCGGGTGTCGAGTGTTCGCGAA
AGCACGTTATTTTCTGCAGCACAGGCGGGTGTTTTGGTTGTGTGCATATG
ATGCACTACTGTCTGTGACTTGTTTCAGCAAGCATCAGCAGCAGTCGTTG
GGGTCCTTATATTTGTCTTACTCGTACCGCAGCAGCAAGGGTAGGGGTGT
GAGGGAGCCAACCGTGGGGTGACACTCGACCGAATTTCGACAAAGCGACA
GTCTCCTCCCCCCGAATTGGATGATGCTGGGTTGATGTGACTTGTTCACT
GGAAGCTGGCACGGGTTTGATGGGCGGCTCGAATTTCCGCACGACATGTC
CGCCACAAAATCCGAAATTTGGAAACACAAATATTTGTCGGGGGGAACCC
AATGGAAAGTTTGAGTAAAAAAATAATTCGCACAAGCTCTCCAAGACGTT
GCTCGCGGATCTTTTTTTTTTTTTCACTCTTTTGTTTCCTGAGAATCCCT
CCCCCCCTCAAGTAACCAAGAGCCAAAATATTTGAAAAGCTATATCTCTT
ACAACAGGAGACATTATGACGCAAATTTGACCCAGACACTTACCGAGACT
AAGCATGTCGGAGGATATGGTCTAGTGTTTCCAAGTTGGCCACAGGAAGC
TCTGTAAGTGTCATTTCGGGTTGTAGCGAGATTTCGGCGGCAGTGTGGGC
GGAGGTGGGAAACCCGGTGAAATATTAGCGCCGCCCAAGCCAAGAACTTG
GCGAAGAAAATGGGCGCCAGATTTGTGTTGTAGTGTGATCAGTTTTTCCA
ACTAGACACCCAACATCGCCAGAGGCCAACCGAACCTACAAGTATATAAA
ATGTAAACACGAATGGACTTCCAATTTCTAAACACCGACCTCCCCTCATG
TGCTCCCCTCACCTCCCTGACGATGCTAAAATAGTTCTGGGTGTTCTCCC
TCCTGGGGATGGCATTCATCGAGTACAACACAATCACGACCGCCTTCGAT
ACGCCTAGCGCCGTGACCGGCGAGGGCGGTCTCAAGGAGGACTACAGCCC
GGGAGACCTCGGCTTCGACCCCCTCGGCATCAAGCCCCAGGACGAGGAGG
CCCTCGAAGTGATGCAGACCAAGGAGCTCAACAACGGGCGCCTCGCCATG
ATCGGCATCGCCGGTATGCTGGTGCAGGAGCTGGTGAACCCGGCGAACAT
CCTCGGCTAGATGGAAATAGCGCTCTTGCCGAGATTTTGTTTTTGTTTTC
AGTTTGAATGGCCCGACATCAGACTAAGCTGCTCGTGATGCAGTCTGAGT
GATGTGTCTCGAAAATACCTGTGATCCCCAAGTAAGTGGATTGGACGAGG
GGTAATGCATGTGTCCCCCGCTCAGTACCACGAGCGAGGGGGCTGGTAGT
GGAGAACGCGTTTGCGTGACTTTGCTGGTTTTTATTTGGTGAGAAGTACT
TTACTCGTTGTCTTGATATATGTCTAAATATTTTATAGTGATACGGGTCG
TGCGCTCATACTCCAATTCTTCCGTAAGTGTACCTTGCCCTTGAAAGCAC
TGTTCATATTTGAATCTTGCGGTTATTGCGTGTTGGCTTGTCTGTACGCG
TTGGAGATTATTTCTTGCTCTTCTAATTTTGCGGAGCTGGTCCCCCTGTA
GGTGACAAACAATCAGGGTGGTCTGCATGAAAAGGGCGTGTGCTAGAGCA
TGTAGGTGTTTTTATCCGTGCTCGACCCATCCTGCGTAACGAGTGCTTTG
TTATGACTCACGATGCTTCCTAAGAGCGTGTGCCTCGGAGGTCTGGGGTA
TTCTCTCCTCCTGAAGAGACGGTGGCATTCTTGTGTTGCTGTCAAGACAC
CTAAATATAAAAAAAAAAAATAGCTGTCCCTTTTGACTTCCGTTGGAAAC
ACGGTTGGTTAACGGTAATTCAACAGTGAGGCGAGGGGAGGCGAAACCAC
CTCCTCTTGCGTCGTCTTTCTTTCGTCACACCCCTCGTTTCTCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig148:53834..59327-

>mRNA_P-littoralis_Contig148.16.2 ID=mRNA_P-littoralis_Contig148.16.2|Name=mRNA_P-littoralis_Contig148.16.2|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig148:53834..59327- (Pylaiella littoralis U1_48)
ATGATGTCCACCTCCGCCCAGATGTTCCTCGCCACCGCTGCCGCCCTCAT
CGCGTCCTCGGCCGCGTTCATCGCGCCGATAGCAGTGCGATCCGCGACGC
CTGTATCTTCCTCGTCTAGCCTCAAGATGAGCGCCGGCTCCGACTACGTC
GCGACTCTGCCCGGCGCTCCCTTTTCCGACGGCAAGATCTTCGACCCCCT
CGGCCTCTCCGACGGCGCTGACCCCAGCGACATCAAGAAGTGGCGCGAGG
CCGAGATCAAGCACGGGCGCGTGGCCATGCTCGCGGCGCTCGGTGTCCTC
GTGGCAGAGGAGTACCACCCGCTGTTTATGGGCCCCGACTACATCGGCCC
CGCGGTGGACCACTTCCAAGAGATCTCCGCTCAGTACCCCGAGTTCTGGG
TGTTCTCCCTCCTGGGGATGGCATTCATCGAGTACAACACAATCACGACC
GCCTTCGATACGCCTAGCGCCGTGACCGGCGAGGGCGGTCTCAAGGAGGA
CTACAGCCCGGGAGACCTCGGCTTCGACCCCCTCGGCATCAAGCCCCAGG
ACGAGGAGGCCCTCGAAGTGATGCAGACCAAGGAGCTCAACAACGGGCGC
CTCGCCATGATCGGCATCGCCGGTATGCTGGTGCAGGAGCTGGTGAACCC
GGCGAACATCCTCGGCTAG
back to top