mRNA_P-littoralis_Contig148.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.9.1
Unique NamemRNA_P-littoralis_Contig148.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig148.9.1 vs. uniprot
Match: D7FZ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ65_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 6.130e-68
Identity = 118/179 (65.92%), Postives = 139/179 (77.65%), Query Frame = 1 
Query:  415 AGRTAYGVGTAPGIAKMLTGLTKESNNGNILIKNGVSFDSDHLEDLKSDFNTLYMFNPIHIGVKVRV------TKVEIDGRELVVRSFDNGKYKLEDGTEIRQWELLEKRCDGGVTLDDKRRRFVRYLVTVYTSMMSRGVPFDRDGTNMSRGMLWNVKDAIARLESGYFDADEDEMDLQ 933
            AG T YGV T PG+AKMLTGLT++ NN N+L+++GV    D L++L+S F+  YMFNP HIGV +        TKVEI GRELVV+SF+ GKY LEDGTEI QWELLE RC GGVTLDD+ RRFVR+LV  YT+MM+RGVPF+RDG NMS GMLWNV DAI RLESG FD DE +M+LQ
Sbjct:  253 AGCTVYGVETVPGLAKMLTGLTEDPNNDNLLVEDGVYCRRDKLDELESAFSAAYMFNPSHIGVSLNPLDPLNETKVEIGGRELVVKSFNTGKYTLEDGTEIGQWELLETRCGGGVTLDDECRRFVRFLVATYTAMMARGVPFERDGGNMSGGMLWNVDDAITRLESGSFDLDEGDMNLQ 431
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BLAST of mRNA_P-littoralis_Contig148.9.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 2.210e-58
Identity = 136/317 (42.90%), Postives = 196/317 (61.83%), Query Frame = 1 
Query:  409 RTAGRTAYGVGTAPGIAKMLT-GLTKESNNGNILIKNGVSFDSDHLEDLKSDFNTLYMFNPIHIGVKVRVTKVEIDGRELVVRSFDNGKYKLEDGTEIRQWELLEKRCDGGVTLDDKRRRFVRYLVTVYTSMMSRGVP--FDRDGTNMSRGMLWNVKDAIARLESGYFDADEDEMDLQQLRELEERLVEQRTLILEVFTEMSVEDTLPQKFWPEKLDGDANE-LRRFAKDRGSMAKLNFLGGLRVKDSDDMLGGSLFTGDVVTGPFSVAPKPLSTSGAWSARLASMIHLLSVAYRQGRTVNLLEGYVPLSKSELYTV 1347
            RT       + + P IAK+LT GL  +  +G I I +GV F    L+ L+  FN  Y+F+P  IGV +  TKV ID  E VV SFD G+Y L DG+ ++QW +LE R DGGVTL+D++RRF+ +LVT Y +MM+  VP   +    +M + M+WN       +E+G  + +++  +  +L ++  R+   R L L +FT  +V+DTLP  FW    D + NE LR FA++ GS+ K+NFLG L    + +++ G LFTG++VTG +S APKP   SGAW A+L S+I  L+ AYR GR+ NLLE Y  LS++E+  V
Sbjct:  724 RTPNEPPSSITSIPLIAKLLTRGLCDDPLDG-IEILDGVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSDGSVMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNP------VEAGKRETNKERRE--ELDQIINRVNTLRDLTLRIFTGAAVKDTLPASFW----DVEGNEELREFAEEAGSLKKINFLGRLECVHNREVVAGKLFTGEIVTGGYSEAPKPDRVSGAWPAKLRSIIVQLTCAYRLGRSNNLLEAYYALSEAEIELV 1027
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BLAST of mRNA_P-littoralis_Contig148.9.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.370e-20
Identity = 73/177 (41.24%), Postives = 98/177 (55.37%), Query Frame = 1 
Query:  361 KRKQSDLSKKHRAKTVRTAGRTAYGVGTAPGIAKML-TGLTKESNNGNILIKNGVSFDSDHLEDLKSDFNTLYMFNPIHIGVKVRVTKVEIDGRELVVRSFDNGKYKLEDGTE--IRQWELLEKRCDGGVTLDDKRRRFVRYLVTVYTSMMSRGVPFDRDGTNMSRGMLWNVKDAIA 882
            KR+      + R  T+  A     G  + P + K+L  GL  +   G+I I +GV +    L +L+  ++  Y+ +P +I V    T+V+IDG   VV+S D+GKY LE G E  I QWELLEKRCD GVTL    RRF+ +LVT YT MM   VP     T +   MLWN  DA+A
Sbjct:  214 KRESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLE-GRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPAL---TGVLTVMLWNPNDAVA 386
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BLAST of mRNA_P-littoralis_Contig148.9.1 vs. uniprot
Match: D7FHJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ0_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.810e-17
Identity = 94/313 (30.03%), Postives = 140/313 (44.73%), Query Frame = 1 
Query:  454 IAKMLTGLTKESNNGNILIKNGVSFDSDHLEDLKSDFNTLYMFNPIHIGVKVRVTKVEIDGRELVVRSFDNGKYKLEDGT-EIRQWELLEKRC--DGGV-----TLDDKRRRFVRYLVTVYTSMMSRGVPFDRD----GTNMSRGML--WNVKDAIARLESGYFDADEDEMDLQQLRELEERLVEQRTLILEVFTEMSVED---TLPQKFWPEKLDG--DANELRRFAKDRGSMAKLNFLGGLRVKDSDDMLGGSLFTGDVVTGPFSVAPKPLSTSGAWSARLASMIHLLSVAYRQGRTVNLLEGYVPLSKSE 1335
            I+ ++ GL  +      +++  V F  D L+ LK  +N    +NP  IGV +  T V+ DG    V S + G Y L D   E+ QWELLE R   DGGV     TL++  RR++R L++ +  M    VPF +     GT+   GML  W+ ++  +                 + RE  E +   R L    F   SV D    LP +   E   G  +AN LR FA  +GS+ +L+ LGGLR +  D M+               V        GA+ + +   + LL  +YR  R ++  E Y+P+   E
Sbjct:   36 ISTLVDGLPGDGEGQLEIVRGKVYFKRDELDSLKKWYNLNAKYNPTDIGVVLEETCVKFDGVVYTVESVEEGWYSLRDSNIEMEQWELLESRFSEDGGVSNSPVTLEEDLRRYIRSLLSWHELMYRSLVPFQKGVQPVGTD---GMLDDWSKRELSS-----------------EEREQLESVASMRRLSKLAFVNTSVADIFHALPVRATREGDTGHDEANFLRAFASSKGSLCRLDGLGGLR-EHGDFMVENDR--------KLMVRMSGDDLHGAYPSHINYAMQLLQYSYRLTRPISFYEAYLPICAGE 319
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BLAST of mRNA_P-littoralis_Contig148.9.1 vs. uniprot
Match: A0A6H5J7T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7T3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.840e-13
Identity = 59/163 (36.20%), Postives = 91/163 (55.83%), Query Frame = 1 
Query:  697 IRQWELLEKRCDGGVTLDDKRRRFVRYLVTVYTSMMSRGVPFDRDGTNMSRGMLWNVKDAIARLESGYFDADEDEMDLQQLRELEERLVEQRTLILEVFTEMSVEDTLPQKFWPEKLDGDANELRRFAKDRGSMAKLNFLGGLRVKDSDDMLGGSLFTGDVVT 1185
            + QW LLEKR DG VTL+ ++RRFV +LVT Y +M++  VP            L N++                    ++L ++  R+   R L+L VFT+ +V+DTLP  FW  ++ G+  +LR FA++ GS+ ++NFL  L    + ++ G S FTG+VVT
Sbjct:  197 MHQWGLLEKRTDGVVTLEAEQRRFVIHLVTTYVNMITHVVP----------ARLANMRGKRK----------------EELDQIINRVNTLRDLMLRVFTDAAVKDTLPAIFW--EVYGN-KDLREFAEETGSLREINFLDRLECAHNTELSGKS-FTGEVVT 329
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FZ65_ECTSI6.130e-6865.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPM1_ECTSI2.210e-5842.90PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K2A3_9PHAE3.370e-2041.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHJ0_ECTSI1.810e-1730.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7T3_9PHAE3.840e-1336.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:23903..25254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHJ0
Model size1352
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.96e-18
EggNOG OGs2EVBK@1|root,2SXC2@2759|Eukaryota
Cds size1350
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.930415-CDS-P-littoralis_Contig148:23904..252541680789696.930415-CDS-P-littoralis_Contig148:23904..25254Pylaiella littoralis U1_48CDSP-littoralis_Contig148 23905..25254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.9.1prot_P-littoralis_Contig148.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 23905..25254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.9.1

>prot_P-littoralis_Contig148.9.1 ID=prot_P-littoralis_Contig148.9.1|Name=mRNA_P-littoralis_Contig148.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=450bp
DSDSDGGNDGDGGGIDSGGGDSDSGGGGGRGGSGGNSGGIDSGGGDSDSG
GGGGRGRVGGGRGRGRGGGGRGATSTSRPKKSSGEKQPPGKARMTAPDMG
RIFTTPDPEHKASDTERIAEKRKQSDLSKKHRAKTVRTAGRTAYGVGTAP
GIAKMLTGLTKESNNGNILIKNGVSFDSDHLEDLKSDFNTLYMFNPIHIG
VKVRVTKVEIDGRELVVRSFDNGKYKLEDGTEIRQWELLEKRCDGGVTLD
DKRRRFVRYLVTVYTSMMSRGVPFDRDGTNMSRGMLWNVKDAIARLESGY
FDADEDEMDLQQLRELEERLVEQRTLILEVFTEMSVEDTLPQKFWPEKLD
GDANELRRFAKDRGSMAKLNFLGGLRVKDSDDMLGGSLFTGDVVTGPFSV
APKPLSTSGAWSARLASMIHLLSVAYRQGRTVNLLEGYVPLSKSELYTVE
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mRNA from alignment at P-littoralis_Contig148:23903..25254-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.9.1 ID=mRNA_P-littoralis_Contig148.9.1|Name=mRNA_P-littoralis_Contig148.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1352bp|location=Sequence derived from alignment at P-littoralis_Contig148:23903..25254- (Pylaiella littoralis U1_48)
GACAGCGACAGCGACGGTGGCAACGACGGCGATGGCGGTGGCATCGACAG
CGGTGGGGGTGACAGTGACAGCGGTGGCGGCGGTGGTCGCGGTGGCAGCG
GCGGAAACAGCGGTGGCATCGACAGCGGTGGGGGTGACAGTGACAGCGGT
GGCGGCGGTGGTCGCGGTCGGGTCGGTGGTGGTCGCGGGCGGGGCAGGGG
CGGCGGTGGCAGAGGCGCCACCAGCACGTCGCGCCCGAAAAAGTCCTCGG
GGGAAAAACAGCCCCCGGGGAAGGCGAGGATGACAGCGCCGGATATGGGG
AGAATATTTACTACCCCGGACCCGGAGCACAAGGCAAGTGACACGGAGCG
TATCGCGGAAAAACGTAAGCAGTCTGATCTGTCAAAAAAGCATAGGGCGA
AAACGGTGCGCACAGCGGGACGTACGGCGTATGGAGTGGGGACGGCCCCG
GGAATCGCTAAGATGCTCACGGGGCTGACAAAGGAATCCAACAACGGCAA
TATTCTCATCAAAAATGGGGTCTCTTTCGACAGTGATCACCTCGAGGACC
TGAAGTCGGACTTCAACACCCTCTACATGTTTAACCCCATCCACATCGGG
GTTAAGGTTAGGGTTACAAAGGTCGAGATCGATGGGAGGGAGCTGGTCGT
GAGGTCGTTCGACAACGGCAAGTACAAGCTGGAAGACGGGACCGAGATCA
GACAGTGGGAGTTGCTGGAGAAAAGGTGTGACGGGGGTGTGACGCTCGAC
GACAAGCGTCGGCGCTTTGTTCGATACCTGGTGACGGTCTATACCTCCAT
GATGTCTCGCGGCGTGCCGTTCGATAGAGACGGCACAAATATGTCGCGTG
GGATGCTATGGAACGTAAAAGATGCTATTGCAAGGCTCGAGAGCGGTTAT
TTCGACGCAGATGAGGATGAGATGGACTTGCAGCAGCTGCGTGAGCTAGA
GGAGCGTCTCGTCGAGCAGCGGACCCTCATACTCGAAGTCTTCACCGAAA
TGAGCGTGGAGGATACCCTACCCCAGAAGTTCTGGCCAGAGAAATTGGAT
GGCGATGCTAACGAGTTGCGACGGTTCGCTAAAGATAGGGGATCAATGGC
CAAGCTCAACTTCCTGGGCGGTCTCCGGGTCAAGGATAGCGATGACATGC
TGGGAGGAAGTTTGTTCACGGGGGATGTTGTGACAGGCCCTTTTTCGGTA
GCACCCAAGCCTCTCTCCACGAGTGGGGCGTGGTCGGCAAGGCTGGCAAG
TATGATCCACCTGCTCTCCGTGGCGTACCGCCAGGGGCGCACGGTGAACC
TCCTCGAAGGATATGTCCCCCTGTCAAAATCAGAGCTGTATACGGTGGAG
CG
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:23903..25254-

>mRNA_P-littoralis_Contig148.9.1 ID=mRNA_P-littoralis_Contig148.9.1|Name=mRNA_P-littoralis_Contig148.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1350bp|location=Sequence derived from alignment at P-littoralis_Contig148:23903..25254- (Pylaiella littoralis U1_48)
GACAGCGACAGCGACGGTGGCAACGACGGCGATGGCGGTGGCATCGACAG
CGGTGGGGGTGACAGTGACAGCGGTGGCGGCGGTGGTCGCGGTGGCAGCG
GCGGAAACAGCGGTGGCATCGACAGCGGTGGGGGTGACAGTGACAGCGGT
GGCGGCGGTGGTCGCGGTCGGGTCGGTGGTGGTCGCGGGCGGGGCAGGGG
CGGCGGTGGCAGAGGCGCCACCAGCACGTCGCGCCCGAAAAAGTCCTCGG
GGGAAAAACAGCCCCCGGGGAAGGCGAGGATGACAGCGCCGGATATGGGG
AGAATATTTACTACCCCGGACCCGGAGCACAAGGCAAGTGACACGGAGCG
TATCGCGGAAAAACGTAAGCAGTCTGATCTGTCAAAAAAGCATAGGGCGA
AAACGGTGCGCACAGCGGGACGTACGGCGTATGGAGTGGGGACGGCCCCG
GGAATCGCTAAGATGCTCACGGGGCTGACAAAGGAATCCAACAACGGCAA
TATTCTCATCAAAAATGGGGTCTCTTTCGACAGTGATCACCTCGAGGACC
TGAAGTCGGACTTCAACACCCTCTACATGTTTAACCCCATCCACATCGGG
GTTAAGGTTAGGGTTACAAAGGTCGAGATCGATGGGAGGGAGCTGGTCGT
GAGGTCGTTCGACAACGGCAAGTACAAGCTGGAAGACGGGACCGAGATCA
GACAGTGGGAGTTGCTGGAGAAAAGGTGTGACGGGGGTGTGACGCTCGAC
GACAAGCGTCGGCGCTTTGTTCGATACCTGGTGACGGTCTATACCTCCAT
GATGTCTCGCGGCGTGCCGTTCGATAGAGACGGCACAAATATGTCGCGTG
GGATGCTATGGAACGTAAAAGATGCTATTGCAAGGCTCGAGAGCGGTTAT
TTCGACGCAGATGAGGATGAGATGGACTTGCAGCAGCTGCGTGAGCTAGA
GGAGCGTCTCGTCGAGCAGCGGACCCTCATACTCGAAGTCTTCACCGAAA
TGAGCGTGGAGGATACCCTACCCCAGAAGTTCTGGCCAGAGAAATTGGAT
GGCGATGCTAACGAGTTGCGACGGTTCGCTAAAGATAGGGGATCAATGGC
CAAGCTCAACTTCCTGGGCGGTCTCCGGGTCAAGGATAGCGATGACATGC
TGGGAGGAAGTTTGTTCACGGGGGATGTTGTGACAGGCCCTTTTTCGGTA
GCACCCAAGCCTCTCTCCACGAGTGGGGCGTGGTCGGCAAGGCTGGCAAG
TATGATCCACCTGCTCTCCGTGGCGTACCGCCAGGGGCGCACGGTGAACC
TCCTCGAAGGATATGTCCCCCTGTCAAAATCAGAGCTGTATACGGTGGAG
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