mRNA_P-littoralis_Contig148.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.4.1
Unique NamemRNA_P-littoralis_Contig148.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig148.4.1 vs. uniprot
Match: Q6XLU7_9PHYC (FirrV-1-H3 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU7_9PHYC)

HSP 1 Score: 292 bits (747), Expect = 3.880e-91
Identity = 167/385 (43.38%), Postives = 239/385 (62.08%), Query Frame = 1
Query:    1 NFSFLATLNKGQNLPLALEAGTVFRSDKGIAGFSGPFPMPFGISNFSDTYFRFYALRFDNFVHATSAGRDSLVTLYASDETTIVDGPFFVSAYGSTLLKCNANTE---FVVAIEDI---TLTSNRYVDMRLV--PPMATEVLLHSRNNWLSARFPDASVTYHRSNMTTGSFMVQAGAPLSI-AGAT----------GNQNNCNVD*WLLLKGDKPFSGLSGADGSGYEATPCWPVTALAQCFPILSTIGTNANARRASISLASPYEGNARLYDESNALLGTFAISRGTSPPVSPDDQKFPASGQFIPGTSLGASLTSGYVETDIPCVCIMNFDGSSV-FSSDAGDEMAIPGTSPDDVKAQIGKDPDGFLRRRDVDTSGNETWVLC 1095
            +F +L TL+ GQN+   L  GTVFRS KGI+GFS PFPMP G+S+ S TYFRFYA R  + V  TSAG +S+VTLY S  T IVDGP  ++ +G+T L C  + +    VV+  D+   T T+    D RL+    M+T +++ +R   ++A+  D +V ++R N  TGSF V AG P+SI  GA           GN  +  +   L+L  +KP S  SGAD +G+EA P WP+   AQ F   + I  N++A  +S+++AS +EG  +++D + AL+ T  ISR T+P  + +DQK PA+GQ+ P  S       GYV +++P +CIMN +GSS  ++SDAGDE+ IPG +PD+++A I    DG  RRRD+D SG E+W +C
Sbjct:  149 DFVYLTTLSMGQNMNFNLPVGTVFRSTKGISGFSAPFPMPLGLSSLSGTYFRFYAFRLTSLVFVTSAGLESVVTLYDSSGTVIVDGPTTLAPFGTTTLNCGEDMQGEFIVVSSTDVYCGTKTTTGDADNRLIIGSMMSTAIIVWNRYCRVTAQELDTNVRWYRQNGETGSFTVNAGTPVSIYTGAVNEDVGGPSNAGNNKDYGLAGCLILASNKPISAFSGADSNGWEAVPGWPLKQTAQLFANPANIDNNSDAGISSVTIASQFEGQFQIFDSTKALIATETISR-TNPVTTAEDQKCPAAGQWQPVNSGLTDWNGGYVVSNVPAICIMNLNGSSAPWTSDAGDELMIPGVTPDEIRACIQIGEDGLYRRRDIDVSGTESWNIC 532          
BLAST of mRNA_P-littoralis_Contig148.4.1 vs. uniprot
Match: Q6XLX5_9PHYC (FirrV-1-C3 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLX5_9PHYC)

HSP 1 Score: 287 bits (735), Expect = 2.470e-89
Identity = 170/391 (43.48%), Postives = 242/391 (61.89%), Query Frame = 1
Query:    1 NFSFLATLNKGQNLPLALEAGTVFRSDKGIAGFSGPFPMPFGISNFSDTYFRFYALRFDNFVHATSAGRDSLVTLYASDETTIVDGPFFVSAYGSTLLKCNANT--EF-VVAIEDITLTSNRY-----VDMRLVPP--MATEVLLHSRNNWLSARFPDASVTYHRSNMTTGSFMVQAGAPLSIAGATGNQN---------------NCNVD*WLLLKGDKPFSGLSGADGSGYEATPCWPVTALAQCFPILSTIGTNANARRASISLASPYEGNARLYDESNALLGTFAISRGTSPPVSPDDQKFPASGQFIPGTSLGASLTSGYVETDIPCVCIMNFDGSSV-FSSDAGDEMAIPGTSPDDVKAQIGKDPDGFLRRRDVDTSGNETWVLC 1095
            +F++L TL+ GQN+   L AGTVFRS KGI+GFS PFPMP G+S+ S TYF FYA R  + + ATSAG +S V LY S  T + DGP  ++ +G+  L C  +   EF VVA  ++   +  Y      DMRLV P  M+ EV++ +R   + A+  + +V ++R N  TGSF V AG P++I   TGN N               +   D  L+LK DKP S  SGAD +G+EATP WP+  +AQ F   +TI  + +A  AS+SL S YEG  +++D S  L+ T  I+R T+   + +DQ +PA+GQ+ P  S  ++ T GY+  ++P +CIMN +GSS  +++D GDE+ IPG +PD+++A I  D +GF RRRD+D+SG ETW +C
Sbjct:  147 DFTYLTTLDMGQNMNFNLPAGTVFRSLKGISGFSAPFPMPLGLSSLSSTYFTFYAFRLTSTIFATSAGLESTVFLYDSSGT-VADGPTTIAPFGTATLHCGDDVQGEFKVVASTNVYCGTRSYNTIRSTDMRLVIPCEMSCEVMVWNRFCRVIAQELNTTVRWYRRNGDTGSFTVHAGTPVNIY--TGNINEDEGVSTPNNAGGTADYKPDGCLILKSDKPISAFSGADSNGWEATPGWPLIQMAQVFANPATINNSTDAGIASVSLGSQYEGEFQVFDSSKTLIATAPITR-TNSVTTTEDQLYPAAGQWQPVNSGLSTFTGGYIIANVPAICIMNLNGSSAPWTADEGDELMIPGVTPDEIRACIKVDQNGFYRRRDIDSSGTETWTIC 533          
BLAST of mRNA_P-littoralis_Contig148.4.1 vs. uniprot
Match: A0A840I3H0_9PROT (Uncharacterized protein n=1 Tax=Parvularcula dongshanensis TaxID=1173995 RepID=A0A840I3H0_9PROT)

HSP 1 Score: 186 bits (472), Expect = 1.580e-49
Identity = 127/378 (33.60%), Postives = 195/378 (51.59%), Query Frame = 1
Query:   52 LEAGTVFRSDKGIAGFSGPF------PMPFGISNFSDTYFRFYALRFDNFVHATSAGR--------DSLVTLYASDETTIVDGPFFVSAYGSTLLKCNANTEF-VVAIEDITLT-------SNRYVDMRLVPPMATEVLLHSRNNWLSARFPDASVTYHRSNMTTGSFMVQAGAPLSIAGATG-NQNNCNVD*WLLLKGDKPFSGLSGADGSGYEATPCWPVTALAQCFPILSTIGTNANARRASISLASPYEGNARLYDESNALLGTFAISRGTSPPVSPDDQKFPASGQFIPGTSLGASLTSGYVETDIPCVCIMN-------FDGSSVFSSDAGDEMAIPGTSPDDVKAQIGKDPDGFLRRRDVDTSGNETWVLC 1095
            L AG V  S  G+ G S         PMP G+  F+   F FYA R      A  AGR         + V L     T  VD    + A+G   L+ +A+ EF V+A + I +         +   D+RLVPP++T+++ H+R  ++SA + D  V+++  +   GSF V  G+P+ +A  TG N N+ + + +++L+   P S  SGADG G EATP +PV ALAQ  P+          + +  +LASP+EG A +Y    +L  T  ++R  +   +PDDQ  P S + + G S+ +    G++E D+P   +MN       F G  +     GDE+A+PG +P++ + ++ +D  GFLRRR +   G E WVLC
Sbjct:  322 LSAGAVIVSTGGVGGASDTASGSDRSPMPLGLEGFAGRQFFFYAFRRS----AGGAGRVFVSAGAVPATVRLLNGAGTAEVDSAA-LGAFGFAELQTDADAEFQVIADQPIFVGVASGLGGGDVVSDLRLVPPLSTQIIGHARQGYVSALYADTVVSWYLQDGRRGSFTVSPGSPVDLAAETGANSNDYSPEDFVILRASGPISSYSGADGEGGEATPHYPVGALAQRVPVPLATKAQGTGKDSCFALASPHEGTAAIYRSDGSLFATLPLTRQNAV-TTPDDQLCPCSAR-LDGQSMPSDFPGGWIEADVPIYVVMNSSQNEAQFTGGVITY---GDEIALPGVTPEEARTEVRRDEAGFLRRRRLGADGAEAWVLC 689          
BLAST of mRNA_P-littoralis_Contig148.4.1 vs. uniprot
Match: UPI00068FCDA4 (DUF2793 domain-containing protein n=1 Tax=Parvularcula oceani TaxID=1247963 RepID=UPI00068FCDA4)

HSP 1 Score: 107 bits (268), Expect = 6.980e-22
Identity = 83/274 (30.29%), Postives = 132/274 (48.18%), Query Frame = 1
Query:   52 LEAGTVFRSDKGIAGFS--GPFPMPFGISNFSDTYFRFYALRFDNF----VHATSAGRDSLVTLYASDETTIVDGPFFVSAYGSTLLKCNANTEFVVAIED---------ITLTSNRYVDMRLVPPMATEVLLHSRNNWLSARFPDASVTYHRSNMTTGSFMVQAGAPLSIAGATGNQNNCNVD*WLLLKGDKPFSGLSGADGSGYEATPCWPVTALAQCFPILSTIGTNANARRASISLASPYEG---NARLYDESNALLGTFAISRGTSPPV 819
            L+ G V  S  G+AG S     PMP G+  F+  +F FYA R        V   +    + V L + D T IVD    + A+G   L  +A+ EF V  +          +   +  Y D+RLVPP+ATE++ +     +SA +PD ++ ++R + T+G+     G    ++    N  +   D  L+L+ D P S  SGAD SG +ATP +P++AL+Q  P+        +     I++ASP++G   + R    S+    +   +R   PPV
Sbjct:  319 LQPGAVLTSTAGLAGSSETDAGPMPLGLEGFAAEHFFFYAYRDSENGRGQVFVAAGAVPAKVRLMSGDGTVIVDEAE-IDAFGLATLFTDADAEFQVVADRPVFVGVAARMDAAAPAYWDLRLVPPLATELIGYGTQGRVSALYPDTTIRWYRRDGTSGTLTAGPGYADLLSATGANDPDYEADACLILRADGPISAYSGADTSGVDATPFFPLSALSQRVPLPLAGHAYGDGSDNGIAVASPHKGRRGSIRPMAASSPRFRSPGAARRRRPPV 591          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q6XLU7_9PHYC3.880e-9143.38FirrV-1-H3 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q6XLX5_9PHYC2.470e-8943.48FirrV-1-C3 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A840I3H0_9PROT1.580e-4933.60Uncharacterized protein n=1 Tax=Parvularcula dongs... [more]
UPI00068FCDA46.980e-2230.29DUF2793 domain-containing protein n=1 Tax=Parvular... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:6456..7584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1247963.JPHU01000007_gene1694
PFAMsDUF2793
Model size1095
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.13e-07
EggNOG OGs28JTG@1|root,2Z9IR@2|Bacteria,1R0GC@1224|Proteobacteria,2TURR@28211|Alphaproteobacteria
DescriptionProtein of unknown function (DUF2793)
Cds size447
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.747468-UTR-P-littoralis_Contig148:6455..65691680789696.747468-UTR-P-littoralis_Contig148:6455..6569Pylaiella littoralis U1_48UTRP-littoralis_Contig148 6456..6569 +
1680789696.7800357-UTR-P-littoralis_Contig148:7050..75841680789696.7800357-UTR-P-littoralis_Contig148:7050..7584Pylaiella littoralis U1_48UTRP-littoralis_Contig148 7051..7584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.7604122-CDS-P-littoralis_Contig148:6569..67791680789696.7604122-CDS-P-littoralis_Contig148:6569..6779Pylaiella littoralis U1_48CDSP-littoralis_Contig148 6570..6779 +
1680789696.7705224-CDS-P-littoralis_Contig148:6813..70501680789696.7705224-CDS-P-littoralis_Contig148:6813..7050Pylaiella littoralis U1_48CDSP-littoralis_Contig148 6814..7050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.4.1prot_P-littoralis_Contig148.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 6570..7050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.4.1

>prot_P-littoralis_Contig148.4.1 ID=prot_P-littoralis_Contig148.4.1|Name=mRNA_P-littoralis_Contig148.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MPFGISNFSDTYFRFYALRFDNFVHATSAGRDSLVTLYASDETTIVDGPF
FVSAYGSTLLKCNANTEFVVAIEDITLTSNRYVDMRLVPPMATEVLLHSR
NNWLSARFPDASVTYHRSNMTTGSFMVQAGAPLSIAGATGNQNNCNVD*
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mRNA from alignment at P-littoralis_Contig148:6456..7584+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.4.1 ID=mRNA_P-littoralis_Contig148.4.1|Name=mRNA_P-littoralis_Contig148.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1129bp|location=Sequence derived from alignment at P-littoralis_Contig148:6456..7584+ (Pylaiella littoralis U1_48)
AACTTCTCCTTCCTGGCTACGCTAAACAAAGGACAGAACCTGCCATTGGC ACTGGAAGCAGGTACGGTTTTCCGATCAGACAAGGGTATCGCCGGGTTCT CGGGTCCCTTCCCCATGCCATTCGGCATCTCCAATTTCAGCGACACCTAC TTTCGGTTCTATGCTCTCCGGTTCGACAACTTTGTCCATGCTACGTCTGC CGGGCGCGACTCTCTGGTAACACTGTATGCGAGCGACGAGACCACCATAG TCGACGGACCATTCTTCGTCAGTGCCTACGGGTCGACCCTCCTAAAGTGT AATGCCAACACGGAGTTTGTTGTTGTGGCCACCACGGCCATCTTCTGTGG GACAAAAGGCGATCGAGGATATCACGTTAACTAGCAACAGATACGTCGAC ATGCGGTTGGTGCCGCCTATGGCAACAGAGGTTTTATTACACAGCAGGAA TAACTGGTTGAGTGCACGATTCCCAGACGCTTCTGTGACGTATCACAGGA GCAACATGACTACCGGAAGCTTCATGGTACAAGCTGGGGCCCCATTATCA ATTGCGGGTGCAACCGGAAATCAAAATAATTGCAACGTTGACTGATGGCT TCTACTCAAGGGGGATAAACCGTTCAGTGGTCTAAGCGGAGCTGACGGTT CTGGCTATGAGGCAACCCCGTGTTGGCCCGTGACAGCACTGGCGCAGTGC TTTCCCATCCTGTCTACCATAGGGACCAACGCCAACGCTAGAAGGGCTTC CATCAGCCTGGCGAGTCCGTACGAAGGCAATGCACGACTGTACGATGAGA GCAACGCGTTGTTGGGCACCTTTGCTATAAGCAGAGGGACTAGCCCTCCT GTTTCACCGGATGATCAGAAATTTCCGGCTAGCGGACAGTTTATTCCGGG TACATCTTTGGGGGCAAGTTTAACGAGTGGGTACGTCGAGACGGATATTC CATGTGTTTGCATCATGAACTTCGACGGAAGTTCCGTGTTCTCAAGCGAC GCGGGCGACGAAATGGCCATACCCGGAACTAGCCCCGACGACGTTAAAGC TCAGATTGGAAAAGACCCTGACGGGTTTTTAAGACGAAGGGATGTAGACA CGTCAGGAAATGAAACTTGGGTGCTGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:6456..7584+

>mRNA_P-littoralis_Contig148.4.1 ID=mRNA_P-littoralis_Contig148.4.1|Name=mRNA_P-littoralis_Contig148.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig148:6456..7584+ (Pylaiella littoralis U1_48)
ATGCCATTCGGCATCTCCAATTTCAGCGACACCTACTTTCGGTTCTATGC
TCTCCGGTTCGACAACTTTGTCCATGCTACGTCTGCCGGGCGCGACTCTC
TGGTAACACTGTATGCGAGCGACGAGACCACCATAGTCGACGGACCATTC
TTCGTCAGTGCCTACGGGTCGACCCTCCTAAAGTGTAATGCCAACACGGA
GTTTGTTGTTGCGATCGAGGATATCACGTTAACTAGCAACAGATACGTCG
ACATGCGGTTGGTGCCGCCTATGGCAACAGAGGTTTTATTACACAGCAGG
AATAACTGGTTGAGTGCACGATTCCCAGACGCTTCTGTGACGTATCACAG
GAGCAACATGACTACCGGAAGCTTCATGGTACAAGCTGGGGCCCCATTAT
CAATTGCGGGTGCAACCGGAAATCAAAATAATTGCAACGTTGACTGA
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