mRNA_P-littoralis_Contig148.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig148.1.1
Unique NamemRNA_P-littoralis_Contig148.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig148.1.1 vs. uniprot
Match: Q8QNP7_ESV1K (EsV-1-12 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP7_ESV1K)

HSP 1 Score: 165 bits (418), Expect = 6.010e-47
Identity = 85/196 (43.37%), Postives = 119/196 (60.71%), Query Frame = 1 
Query:    1 MALLVPIARDRNGDTVLPDCDKRKGPFECVECSGSLLVRQGEKNQWHFAHAT--DSSCP-GRESMKHLAAKLIVANYFTKINLVKTCSRRKQKHERRYDGCTSLREFXXXXXHSADVAIFDFSGTLRAIVEVKYSHATTGEALDSRISRVGAENAWEVEATRVINLMSAL-YRGETINLVAT-NTAKCAPCGMASK 573
            M+LL+P+A+++ G+TV P C+K  GPF C+ C+  L++RQG+KNQWHFAH +  D  C  G E+  HLAAKL++  Y T+      C R +  HE++Y GCT+++E+     HSADVA+    G L AI+EV  +H T GE L SRI RVGA+N W V+A  V      L    +TI++ +      CA C    K
Sbjct:    1 MSLLIPVAKNKTGETVTPTCNKEDGPFACLGCAKPLVLRQGQKNQWHFAHHSNNDDECSAGGETYIHLAAKLLLVTYITRFEFASKCGRLRHDHEKQYQGCTAVQEYRYDGVHSADVAVLR-DGNLEAIIEVMATHKTEGEPLASRIERVGADNVWGVDAMDVWRQRKRLSLTTDTIHVASLLKLEDCAECAQEGK 195
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BLAST of mRNA_P-littoralis_Contig148.1.1 vs. uniprot
Match: UPI000E3CC59D (hypothetical protein n=1 Tax=Nocardiopsis sp. TNDT3 TaxID=2249354 RepID=UPI000E3CC59D)

HSP 1 Score: 57.4 bits (137), Expect = 2.980e-6
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:   19 IARDRNGDTVLPDCDKRKGPFECVEC-SGSLLVRQGEKNQWHFAHATDSSCPGR-ESMKHLAAKLIVANYFTKI 234
            IA D +G+  L   D   G + C EC SG +L ++G K   HFAH   S+C    ES +HL AK ++A  FT++
Sbjct:    3 IANDHDGERTLAAKDTPDGAYTCPECDSGVILKKRGRKIAAHFAHTPGSTCTAEGESWRHLLAKQVLAEEFTRL 76
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig148.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNP7_ESV1K6.010e-4743.37EsV-1-12 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
UPI000E3CC59D2.980e-640.54hypothetical protein n=1 Tax=Nocardiopsis sp. TNDT... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig148contigP-littoralis_Contig148:1431..2135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1294265.JCM21738_1924
Preferred namecoiA
PFAMsCoiA
Model size705
Max annot lvl91061|Bacilli
KEGG koko:K06198
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000128
EggNOG OGsCOG4469@1|root,COG4469@2|Bacteria,1TRGD@1239|Firmicutes,4HFP5@91061|Bacilli,1ZCFD@1386|Bacillus
DescriptionCompetence protein
Cds size705
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.6553793-CDS-P-littoralis_Contig148:1430..21351680789696.6553793-CDS-P-littoralis_Contig148:1430..2135Pylaiella littoralis U1_48CDSP-littoralis_Contig148 1431..2135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig148.1.1prot_P-littoralis_Contig148.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig148 1431..2135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig148.1.1

>prot_P-littoralis_Contig148.1.1 ID=prot_P-littoralis_Contig148.1.1|Name=mRNA_P-littoralis_Contig148.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp
MALLVPIARDRNGDTVLPDCDKRKGPFECVECSGSLLVRQGEKNQWHFAH
ATDSSCPGRESMKHLAAKLIVANYFTKINLVKTCSRRKQKHERRYDGCTS
LREFRYDGCHSADVAIFDFSGTLRAIVEVKYSHATTGEALDSRISRVGAE
NAWEVEATRVINLMSALYRGETINLVATNTAKCAPCGMASKLRMDVHRPR
QNADDGTTAKKRKVTVEKISDTLVRRDGVLPKKFL
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mRNA from alignment at P-littoralis_Contig148:1431..2135-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig148.1.1 ID=mRNA_P-littoralis_Contig148.1.1|Name=mRNA_P-littoralis_Contig148.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig148:1431..2135- (Pylaiella littoralis U1_48)
ATGGCTCTCTTGGTGCCAATCGCACGAGACCGCAATGGAGACACGGTCCT
CCCAGATTGTGATAAGCGCAAAGGGCCGTTTGAGTGCGTTGAGTGTTCGG
GAAGTTTGTTGGTGCGACAAGGTGAAAAAAACCAGTGGCACTTTGCACAT
GCGACTGACTCGTCTTGTCCCGGGCGAGAGTCAATGAAGCACCTGGCGGC
GAAGCTGATTGTTGCGAATTACTTCACCAAAATCAACCTGGTGAAGACGT
GCTCAAGACGAAAACAAAAGCACGAGCGTCGGTACGACGGGTGTACGTCG
TTGCGTGAGTTTCGCTACGATGGCTGCCACTCAGCGGACGTAGCAATCTT
TGATTTTTCGGGCACACTGCGAGCCATCGTCGAAGTCAAATATTCTCATG
CCACGACGGGAGAAGCCCTCGATTCAAGAATTTCTCGAGTTGGCGCAGAA
AATGCGTGGGAAGTGGAGGCGACGAGAGTCATCAACTTGATGAGCGCGCT
GTATAGGGGGGAGACGATCAATTTGGTTGCGACCAACACCGCCAAGTGCG
CACCATGTGGAATGGCTTCGAAGTTGAGAATGGATGTCCATCGCCCGAGG
CAAAACGCAGACGATGGCACCACGGCCAAAAAACGAAAGGTCACTGTGGA
AAAAATTAGCGACACGCTCGTGCGGCGCGACGGCGTTCTCCCGAAGAAGT
TCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig148:1431..2135-

>mRNA_P-littoralis_Contig148.1.1 ID=mRNA_P-littoralis_Contig148.1.1|Name=mRNA_P-littoralis_Contig148.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig148:1431..2135- (Pylaiella littoralis U1_48)
ATGGCTCTCTTGGTGCCAATCGCACGAGACCGCAATGGAGACACGGTCCT
CCCAGATTGTGATAAGCGCAAAGGGCCGTTTGAGTGCGTTGAGTGTTCGG
GAAGTTTGTTGGTGCGACAAGGTGAAAAAAACCAGTGGCACTTTGCACAT
GCGACTGACTCGTCTTGTCCCGGGCGAGAGTCAATGAAGCACCTGGCGGC
GAAGCTGATTGTTGCGAATTACTTCACCAAAATCAACCTGGTGAAGACGT
GCTCAAGACGAAAACAAAAGCACGAGCGTCGGTACGACGGGTGTACGTCG
TTGCGTGAGTTTCGCTACGATGGCTGCCACTCAGCGGACGTAGCAATCTT
TGATTTTTCGGGCACACTGCGAGCCATCGTCGAAGTCAAATATTCTCATG
CCACGACGGGAGAAGCCCTCGATTCAAGAATTTCTCGAGTTGGCGCAGAA
AATGCGTGGGAAGTGGAGGCGACGAGAGTCATCAACTTGATGAGCGCGCT
GTATAGGGGGGAGACGATCAATTTGGTTGCGACCAACACCGCCAAGTGCG
CACCATGTGGAATGGCTTCGAAGTTGAGAATGGATGTCCATCGCCCGAGG
CAAAACGCAGACGATGGCACCACGGCCAAAAAACGAAAGGTCACTGTGGA
AAAAATTAGCGACACGCTCGTGCGGCGCGACGGCGTTCTCCCGAAGAAGT
TCTTG
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