mRNA_P-littoralis_Contig1479.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1479.16.1
Unique NamemRNA_P-littoralis_Contig1479.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1479.16.1 vs. uniprot
Match: A0A6H5JU85_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU85_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.660e-16
Identity = 38/51 (74.51%), Postives = 40/51 (78.43%), Query Frame = 2 
Query:   14 IGTGPSPPALHRTPIR*LEHLLVSHSVCALAPSQARLAAKEGGPIVNGLNR 166
            I TGPSP ALHRTPIR LE LL SHS CALA SQA L AKEGG I+NG +R
Sbjct:    5 IRTGPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIINGESR 55
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BLAST of mRNA_P-littoralis_Contig1479.16.1 vs. uniprot
Match: A0A6H5K8U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8U0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.200e-16
Identity = 38/51 (74.51%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:   14 IGTGPSPPALHRTPIR*LEHLLVSHSVCALAPSQARLAAKEGGPIVNGLNR 166
            I TGPSP ALHRTPIR LE LL SHS CALA SQA L AKEGG I+NG  R
Sbjct:    5 IRTGPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIINGRPR 55
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BLAST of mRNA_P-littoralis_Contig1479.16.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.230e-13
Identity = 37/48 (77.08%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:   14 IGTGPSPPALHRTPIR*LEHLLVSHSVCALAPSQARLAAKEGGPIVNG 157
            I TGPSP ALHRTPIR LE LL SHS CALA SQA L AKEGG I+NG
Sbjct:    5 IRTGPSPQALHRTPIRLLERLLDSHSACALAASQAGLVAKEGGLIING 52
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BLAST of mRNA_P-littoralis_Contig1479.16.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.230e-13
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:   14 IGTGPSPPALHRTPIR*LEHLLVSHSVCALAPSQARLAAKEGGPIVNGLNRVWHGPEY 187
            I TGPSP ALHRTPIR  E LL SHS CALA SQA L  KEGGPI+NG      G ++
Sbjct:    5 IRTGPSPQALHRTPIRLPERLLDSHSACALAASQAGLVVKEGGPIINGSVLPMQGSQH 62
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BLAST of mRNA_P-littoralis_Contig1479.16.1 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.250e-8
Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 2 
Query:   14 IGTGPSPPALHRTPIR*LEHLLVSHSVCALAPSQARLAA 130
            I TGPSP ALHRTPIR LE LL SHS CALA SQA L +
Sbjct:   37 IRTGPSPQALHRTPIRLLERLLDSHSACALAASQAWLGS 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1479.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JU85_9PHAE1.660e-1674.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8U0_9PHAE4.200e-1674.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE1.230e-1377.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.230e-1363.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEF8_9PHAE8.250e-874.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1479contigP-littoralis_Contig1479:13879..15021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size189
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.2737026-CDS-P-littoralis_Contig1479:13878..140331680789696.2737026-CDS-P-littoralis_Contig1479:13878..14033Pylaiella littoralis U1_48CDSP-littoralis_Contig1479 13879..14033 +
1680789696.286203-CDS-P-littoralis_Contig1479:14987..150211680789696.286203-CDS-P-littoralis_Contig1479:14987..15021Pylaiella littoralis U1_48CDSP-littoralis_Contig1479 14988..15021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1479.16.1prot_P-littoralis_Contig1479.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1479 13879..15021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1479.16.1

>prot_P-littoralis_Contig1479.16.1 ID=prot_P-littoralis_Contig1479.16.1|Name=mRNA_P-littoralis_Contig1479.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
MVQDHRDRALSTRPSPYTHPIARASTGLALGVRSSTITGPAGGEGRRPNR
QRVEQGVAWTRIL
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mRNA from alignment at P-littoralis_Contig1479:13879..15021+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1479.16.1 ID=mRNA_P-littoralis_Contig1479.16.1|Name=mRNA_P-littoralis_Contig1479.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1143bp|location=Sequence derived from alignment at P-littoralis_Contig1479:13879..15021+ (Pylaiella littoralis U1_48)
ATGGTACAGGACCATAGGGACAGGGCCCTCTCCACCCGCCCTTCACCGTA
CACCCATCCGATAGCTCGAGCATCTACTGGTCTCGCACTCGGTGTGCGCT
CTAGCACCATCACAGGCCCGGCTGGCGGCGAAGGAAGGAGGCCCAATCGT
CAACGGTGAGTCGAGAAAAAGGAAAACATGACCAAACATGACCATAGGAG
ATCCGGGGGGTCGGACAAAACTGGCGAACATGGTCGCCACGCTGCCCTCA
CGCTCGTCTCTGAGCGCACGGGTTGCTGCGCAACAAGGTTAGGAGCATAG
AGTGTGTAAGTCTGGCTTTCTCGGACAGAAGTCCGATTGTCAAACGGTGT
AGTGTACGCAGAGCAATGTCCAAACTTCGGACCCATAACCGTCACAGTGC
CGTATCTCTCCGCTTGGGCACACTAAAATGGACTGGTTTGTCAAGCAGTT
TGTTTGCACAATCAGAACGCTGTCCTCCTGCTGCAACAGCTGAACCCCGC
AGCATAACCTCCCCAACATGTTGCACAGCACCACCTCAGTAGAAGCTGGG
GGAGTGCTGCATACCCTGTCATGTAGCATGGCCGCGTCAGACGCTTTTTT
TGTCACTTGTGTCTCAATATTGTCACGGACCCACCGCCGTGTTCGACTCA
AGATGACACACCCCCTAGACCGACAATCAAAGCACGATTATCGACAACGA
AGCGACGAGGAAGAGGACTTACGTGTCGAAACGATACCCTGTGAGCGAGC
TCTCAACCTGCCCGTAGCAACGCGGACGTTTTCCGCGCTACCACTATTTC
AGCTGTTGTTGATAAGTCGAGCTATGGAAATCGGTCCAGGTGATGTGTTG
TCTTGCGTCGTACCACGGCCGTGGTAGGTGTGGTATCCTGCGTCGTACAG
CGTATGCACCCCCCCCGGCAGCAGCACGTTGTTCGCATACATAGCTACGC
AGCTGATGCTTCCGGCGTCCATCCTTGTTCTGCATTATCATGCACTAGAA
TTAGCCTCCATGTTGGGTGGGGTCCTCACGAAGGGCCATCAAGCGGTCAA
CCAGCACTTCAGCCGCGTTCATGTGGTAGCTCCTTCCCCTGCCTGGTTTC
AAATTTCAGGGTTGAACAGGGTGTGGCATGGACCCGAATACTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1479:13879..15021+

>mRNA_P-littoralis_Contig1479.16.1 ID=mRNA_P-littoralis_Contig1479.16.1|Name=mRNA_P-littoralis_Contig1479.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig1479:13879..15021+ (Pylaiella littoralis U1_48)
ATGGTACAGGACCATAGGGACAGGGCCCTCTCCACCCGCCCTTCACCGTA
CACCCATCCGATAGCTCGAGCATCTACTGGTCTCGCACTCGGTGTGCGCT
CTAGCACCATCACAGGCCCGGCTGGCGGCGAAGGAAGGAGGCCCAATCGT
CAACGGGTTGAACAGGGTGTGGCATGGACCCGAATACTC
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