mRNA_P-littoralis_Contig1479.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1479.11.1
Unique NamemRNA_P-littoralis_Contig1479.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1479.11.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.130e-15
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   82 NELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGTLWAEVKGLPPTTHLIVACW 267
            N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT  LI+A W
Sbjct:  102 NDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADLILARW 163
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1479.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE1.130e-1559.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1479contigP-littoralis_Contig1479:10804..11593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size272
Hectar predicted targeting categorymitochondrion
Exons2
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.1538358-UTR-P-littoralis_Contig1479:10803..108221680789696.1538358-UTR-P-littoralis_Contig1479:10803..10822Pylaiella littoralis U1_48UTRP-littoralis_Contig1479 10804..10822 -
1680789696.194124-UTR-P-littoralis_Contig1479:11544..115931680789696.194124-UTR-P-littoralis_Contig1479:11544..11593Pylaiella littoralis U1_48UTRP-littoralis_Contig1479 11545..11593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.1646893-CDS-P-littoralis_Contig1479:10822..110091680789696.1646893-CDS-P-littoralis_Contig1479:10822..11009Pylaiella littoralis U1_48CDSP-littoralis_Contig1479 10823..11009 -
1680789696.1763196-CDS-P-littoralis_Contig1479:11527..115441680789696.1763196-CDS-P-littoralis_Contig1479:11527..11544Pylaiella littoralis U1_48CDSP-littoralis_Contig1479 11528..11544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1479.11.1prot_P-littoralis_Contig1479.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1479 10823..11544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1479.11.1

>prot_P-littoralis_Contig1479.11.1 ID=prot_P-littoralis_Contig1479.11.1|Name=mRNA_P-littoralis_Contig1479.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
MLKPGRMLARSTSWPRTLRTISRTVFAGTQIVPCRWCLREGTPSSTGVST
GSVHFGRRSKVFLLQRT*
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mRNA from alignment at P-littoralis_Contig1479:10804..11593-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1479.11.1 ID=mRNA_P-littoralis_Contig1479.11.1|Name=mRNA_P-littoralis_Contig1479.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=790bp|location=Sequence derived from alignment at P-littoralis_Contig1479:10804..11593- (Pylaiella littoralis U1_48)
CAGCGATGACGCAGAAAACCAGCGCAAGAAGCAGCCTGTGTCAGCAAGTA
TGTTGAAGCCTGGGAGGTTAGAGTCGAATGAGTACGGGTGACAAAAAAAC
GGCGTGTTCTTTTTTCCTTCTTGCGTTATCTATGAACCATCGCTTTTCTC
TCTTTGCTTTCTCCCACGTCCCCCCGCAAACCTGAACTCGCCTGACGAGT
GTCTTTGAGTCTCACGCTCTCCTCGTTGCGCTTGCGAATTCTGATTGGAG
CAAGGTCGAGGAGAGGAGTCTGAAGAAGATAACGATTGCATGAGCATGCA
GGATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGTCCAATACATGC
GTGGTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTGCATATTGTTGCC
TGCTCGCACATTTCAGACATCATGCAGCCAATGTTTCCTTTTGGTGTGAC
CTCGCATAGTCAGACTGGCACGAGTTGTTTCACTTGTGTTTCATAACCAT
CGCAACGAGAGCCTGTTTGGGATGATATTTTCAATCGCTTTTATCTTTTG
TTTGTCCGCGGCCGTGTGGTTGACGATGAAGCAGAATGCTGGCAAGGTCA
ACGAGCTGGCCCAGAACATTGCGAACCATATCGAGGACGGTCTTCGCGGG
GACACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTT
CAACGGGCGTCTCGACTGGCTCGGTACACTTTGGGCGGAGGTCAAAGGTC
TTCCTCCTACAACGCACTTGATTGTCGCGTGTTGGACGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1479:10804..11593-

>mRNA_P-littoralis_Contig1479.11.1 ID=mRNA_P-littoralis_Contig1479.11.1|Name=mRNA_P-littoralis_Contig1479.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig1479:10804..11593- (Pylaiella littoralis U1_48)
ATGTTGAAGCCTGGGAGAATGCTGGCAAGGTCAACGAGCTGGCCCAGAAC
ATTGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGT
GTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACT
GGCTCGGTACACTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCAC
TTGA
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