mRNA_P-littoralis_Contig1479.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1479.5.1
Unique NamemRNA_P-littoralis_Contig1479.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1479.5.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.610e-19
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 2 
Query:  137 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLG 292
            NFGRS+YARK GLDK  GYI SADDSKLEELMDILRFF++WR +LE + TLG
Sbjct:   25 NFGRSDYARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLG 76
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BLAST of mRNA_P-littoralis_Contig1479.5.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.300e-19
Identity = 40/53 (75.47%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:  137 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGD 295
            NFGRSEYAR+ GLDK+AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD
Sbjct:  551 NFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGD 603
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BLAST of mRNA_P-littoralis_Contig1479.5.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.070e-17
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  137 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGD 295
            NFGRS+YARK GLDK  GY  SADDSKLE LMDILRFF++WR +LE + TLGD
Sbjct:   38 NFGRSDYARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD 90
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BLAST of mRNA_P-littoralis_Contig1479.5.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.580e-16
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:  134 RNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGD 295
            RNFGRS+YARK GLDK   YI SADDSKLEE+MDIL  F++WR +LE + TLGD
Sbjct:  427 RNFGRSDYARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGD 480
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BLAST of mRNA_P-littoralis_Contig1479.5.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-10
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 2 
Query:  185 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGD 295
            AGYI SADDSKLEELMDILRF  +WR +LE ++TLGD
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGD 38
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BLAST of mRNA_P-littoralis_Contig1479.5.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.420e-8
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 2 
Query:  188 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGD 295
            GYI S DDSKL+ELMDIL FF++WR +LE + TLGD
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGD 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1479.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KH17_9PHAE2.610e-1976.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE4.300e-1975.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE2.070e-1773.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE7.580e-1670.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE1.590e-1075.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE3.420e-869.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1479contigP-littoralis_Contig1479:7008..8319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.1179764-CDS-P-littoralis_Contig1479:7007..71411680789696.1179764-CDS-P-littoralis_Contig1479:7007..7141Pylaiella littoralis U1_48CDSP-littoralis_Contig1479 7008..7141 +
1680789696.1292496-CDS-P-littoralis_Contig1479:8155..83181680789696.1292496-CDS-P-littoralis_Contig1479:8155..8318Pylaiella littoralis U1_48CDSP-littoralis_Contig1479 8156..8318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1479.5.1prot_P-littoralis_Contig1479.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1479 7008..8318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1479.5.1

>prot_P-littoralis_Contig1479.5.1 ID=prot_P-littoralis_Contig1479.5.1|Name=mRNA_P-littoralis_Contig1479.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
RLPTGCRRCFRRRRRMREGRGHDRTPRPPRVIVHWRATAALRDHEKLRPL
GVRAQERPRQESGLHYIGRRLQTRRTHGHLAFFREVAVQSGGEDDAGRR
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mRNA from alignment at P-littoralis_Contig1479:7008..8319+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1479.5.1 ID=mRNA_P-littoralis_Contig1479.5.1|Name=mRNA_P-littoralis_Contig1479.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1312bp|location=Sequence derived from alignment at P-littoralis_Contig1479:7008..8319+ (Pylaiella littoralis U1_48)
CGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATGAG
GGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATCGTGC
ATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGTAAGCCTACTTCACC
ATAGAGTCCGGGGTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGTAATG
TTGTTGAGGAACACACAGAGTTCCTCATAGCTTTTTTAATAGGTGTCCCG
CGTAGCACTAGCGTCGAGGGTTGATGCCTTCATCGACATCTTCAACGGCA
AGTGATAGGTGTTCGTATTGTCGCAGTATGTAGAGGGGCCTGTCGCGTGA
CTATGTTCCGTGCTCTCCTTTTTCCCCTGAAGTTTCCCGGCACCCGGGTA
CACTCTTTCTCTATACAGGGGTGGTTGTTCCGAAGTCCGGAAATACCGGC
AAACGCCCTGTCTCCCGGCGCAGCTCGTGACGGTTTTTTTTTTTTTTTTA
GCTTGATTGTTGAGTTTTCATGGGCTAAAAACCCGCCACACTTGTGTTCT
AACGGGATTGAACAAATATCGTAATTTGCCAATAAAATCAGTTATTATTG
TTTTCAAACAAGTATGTTAAACAGAGATATCGCACCAAAACAGCACATCG
AAGACCAATATACTGTTTTATTCGAGACAACTTTTCTTTCGATTTCAAAA
TAGAGTGCGGCAAACTATTCCTCTCATCATTGCCGTGAACTGTTTGTGGC
GTTGTTGGTGGTGGTGCAGGGGGTGGTGTTTGTGTCGTTTTTGTGTGATA
AAATGTGCTGTGTAATGGCTGCAATGGATAGATTTCATGACATATTATGC
GGATGCCGGGGTGCGGAGTGCAGGATGGGGGCTCAGTGGTGAGTTTTGGG
GCCCCGTGGAACGATTCTCGCAACAAATGATGCAATTAGCCAAAAACATA
AATAACTCTGCAGCTACGTATCGACATATCTCGACGAGGCGATCACTAAT
ATTGTTGTTTCACGTCCCAACGCGATTGAACAAAAAGGAGAGCACGGACC
TACTTATATATATTTTTCCTCGCGCAATGTACACACTCTGTGCGCGTCGT
TTGTCTCTTCCCACACGGCCCCATGTATGTGTATGTGTATATATTCAGGA
AACTTCGGCCGCTCGGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGC
GGGCTACATTACATCGGCCGACGACTCCAAACTAGAAGAACTCATGGACA
TCTTGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACG
CTGGGCGACGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1479:7008..8319+

>mRNA_P-littoralis_Contig1479.5.1 ID=mRNA_P-littoralis_Contig1479.5.1|Name=mRNA_P-littoralis_Contig1479.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1479:7008..8319+ (Pylaiella littoralis U1_48)
CGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATGAG
GGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATCGTGC
ATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGAAACTTCGGCCGCTC
GGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACAT
CGGCCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGCGTTTTTTC
GAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGCTGGGCGACGT
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