mRNA_P-littoralis_Contig1477.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1477.1.1
Unique NamemRNA_P-littoralis_Contig1477.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1477.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1477contigP-littoralis_Contig1477:4054..4529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size477
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.0203404-UTR-P-littoralis_Contig1477:4053..41091680789696.0203404-UTR-P-littoralis_Contig1477:4053..4109Pylaiella littoralis U1_48UTRP-littoralis_Contig1477 4054..4109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789696.029653-CDS-P-littoralis_Contig1477:4109..45291680789696.029653-CDS-P-littoralis_Contig1477:4109..4529Pylaiella littoralis U1_48CDSP-littoralis_Contig1477 4110..4529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1477.1.1prot_P-littoralis_Contig1477.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1477 4110..4529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1477.1.1

>prot_P-littoralis_Contig1477.1.1 ID=prot_P-littoralis_Contig1477.1.1|Name=mRNA_P-littoralis_Contig1477.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MSLPGQGEGENRQGTPPQPAADGSSGHHETPVGALSLSPGDLAGIASIVD
QVMRNAPAQAAAQDRGQPHQSGSSRIEIRQKTDVRPWTGNFSKGESVEIA
LRVFKGSVFAWLNSEGLDGFMDSQMEIPVGVENINMQQLR
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mRNA from alignment at P-littoralis_Contig1477:4054..4529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1477.1.1 ID=mRNA_P-littoralis_Contig1477.1.1|Name=mRNA_P-littoralis_Contig1477.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=476bp|location=Sequence derived from alignment at P-littoralis_Contig1477:4054..4529+ (Pylaiella littoralis U1_48)
TAACACGCTAGCGAGTTCGAACGACGGTGGACTTCTGTGTGAGCGGCCGC
TAGGCCATGTCTCTGCCGGGACAAGGAGAAGGAGAGAACAGACAAGGAAC
ACCACCACAACCAGCAGCTGACGGCAGCAGCGGGCATCATGAGACCCCGG
TCGGCGCGCTCTCGTTATCGCCAGGCGACCTGGCCGGGATTGCCTCGATT
GTCGACCAAGTTATGCGGAACGCACCCGCCCAGGCAGCTGCCCAGGACCG
AGGGCAGCCCCACCAGTCAGGTTCTTCTAGGATTGAGATTAGGCAGAAAA
CTGATGTTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAG
ATTGCCCTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGA
AGGGCTTGATGGATTTATGGATAGCCAGATGGAGATTCCTGTAGGAGTGG
AGAACATCAACATGCAACAACTCAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1477:4054..4529+

>mRNA_P-littoralis_Contig1477.1.1 ID=mRNA_P-littoralis_Contig1477.1.1|Name=mRNA_P-littoralis_Contig1477.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1477:4054..4529+ (Pylaiella littoralis U1_48)
ATGTCTCTGCCGGGACAAGGAGAAGGAGAGAACAGACAAGGAACACCACC
ACAACCAGCAGCTGACGGCAGCAGCGGGCATCATGAGACCCCGGTCGGCG
CGCTCTCGTTATCGCCAGGCGACCTGGCCGGGATTGCCTCGATTGTCGAC
CAAGTTATGCGGAACGCACCCGCCCAGGCAGCTGCCCAGGACCGAGGGCA
GCCCCACCAGTCAGGTTCTTCTAGGATTGAGATTAGGCAGAAAACTGATG
TTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAGATTGCC
CTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGAAGGGCT
TGATGGATTTATGGATAGCCAGATGGAGATTCCTGTAGGAGTGGAGAACA
TCAACATGCAACAACTCAGA
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