mRNA_P-littoralis_Contig1476.3.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1476.3.4
Unique NamemRNA_P-littoralis_Contig1476.3.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1476.3.4 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.230e-6
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:  578 KVTVEKPDLGGRGSVKSITLNGIDVMNWMKDNALSTAEGHICKKQDLALMLSEVSGVQPCRGISRQHV 781
            +V VEKPD+ GRGS++ I++NG+DV +    +A+ST    I   +DL  +L  V  V PC G +RQH+
Sbjct:    3 QVVVEKPDIQGRGSIRYISMNGLDVTS---HDAISTVGRFIYSLEDLKQVLRIVDSVLPCLGYARQHM 67
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1476.3.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE5.230e-644.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1476contigP-littoralis_Contig1476:5267..6880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size781
Hectar predicted targeting categoryother localisation
Exons5
Cds size756
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1476.3.4prot_P-littoralis_Contig1476.3.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1476 5292..6880 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789695.702066-UTR-P-littoralis_Contig1476:5266..52911680789695.702066-UTR-P-littoralis_Contig1476:5266..5291Pylaiella littoralis U1_48UTRP-littoralis_Contig1476 5267..5291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789695.7121196-CDS-P-littoralis_Contig1476:5291..54021680789695.7121196-CDS-P-littoralis_Contig1476:5291..5402Pylaiella littoralis U1_48CDSP-littoralis_Contig1476 5292..5402 +
1680789695.7226067-CDS-P-littoralis_Contig1476:5594..58491680789695.7226067-CDS-P-littoralis_Contig1476:5594..5849Pylaiella littoralis U1_48CDSP-littoralis_Contig1476 5595..5849 +
1680789695.7310026-CDS-P-littoralis_Contig1476:6086..62751680789695.7310026-CDS-P-littoralis_Contig1476:6086..6275Pylaiella littoralis U1_48CDSP-littoralis_Contig1476 6087..6275 +
1680789695.7401655-CDS-P-littoralis_Contig1476:6462..66061680789695.7401655-CDS-P-littoralis_Contig1476:6462..6606Pylaiella littoralis U1_48CDSP-littoralis_Contig1476 6463..6606 +
1680789695.7510993-CDS-P-littoralis_Contig1476:6823..68801680789695.7510993-CDS-P-littoralis_Contig1476:6823..6880Pylaiella littoralis U1_48CDSP-littoralis_Contig1476 6824..6880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1476.3.4

>prot_P-littoralis_Contig1476.3.4 ID=prot_P-littoralis_Contig1476.3.4|Name=mRNA_P-littoralis_Contig1476.3.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=252bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRVWTPASIATLEFG
FLCWDEPNSLTSMLPVCLWLKHHKRSGKVKTGTSAQALVWVREWLATSEY
AGIVGFDATPYSIGHMFVRLLKHKNYFCLDVAGMQKKAKVYSIQSCEWGD
TYIDLLKSLPLQWSATRLPDTSMVFSRDDQGAIVKVTVEKPDLGGRGSVK
SITLNGIDVMNWMKDNALSTAEGHICKKQDLALMLSEVSGVQPCRGISRQ
HV
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mRNA from alignment at P-littoralis_Contig1476:5267..6880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1476.3.4 ID=mRNA_P-littoralis_Contig1476.3.4|Name=mRNA_P-littoralis_Contig1476.3.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=1614bp|location=Sequence derived from alignment at P-littoralis_Contig1476:5267..6880+ (Pylaiella littoralis U1_48)
AACGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATG
AGGGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATCGT
GCATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGTAAGCCTACTTCA
CCATAGAGTCCGGGGTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGTAA
TGTTGTTGAGGAACACACAGAGTTCCTCATAGCTTTTTTAATAGGTGTCC
CGCGTTTCCTTCCCCTGTCGTCCTCCCCACTCCCGCCCCCTCGACCCTCG
TACCTCTGTGTCGTCGTTTTTGATATAGGTGTGGACGCCCGCGTCCATCG
CCACCTTAGAGTTTGGCTTCCTCTGTTGGGATGAACCCAACAGCCTGACG
AGCATGTTGCCTGTGTGCCTCTGGCTCAAGCACCACAAGCGGTCAGGCAA
GGTCAAGACAGGAACCTCCGCCCAAGCGTTGGTATGGGTGCGTGAATGGC
TAGCCACCTCCGAGTATGCCGGAATAGTGGGATTCGACGCGACGCCCTAC
TCAATTGGACACATGTTCGTCCGCCTTCTGAAGGTACGGGATAATTGTGT
CGTAGACGGTTGGCCCGAGTGGGGCTACGTGCATCTCATTTTTTATTTGG
AAAGACAGCTGTGATCACAAGTGTATCGCACCCTAAACCGAAGCTTCGCG
ACTGTTGGATCGATCTTTGAGTACGAGAGCTTTCCATTTGATGTCTTATA
TTTCTACCTGCGCACCCCTCCGCCCGTTCCCCTGTGTTCTCCTCGGCTAC
CGTTGTACTTCACCCGAAAGCACAAGAACTACTTCTGTCTGGACGTGGCT
GGTATGCAGAAGAAAGCGAAGGTGTATTCCATCCAGTCGTGCGAGTGGGG
CGATACGTACATCGACCTCTTGAAGTCGTTGCCCTTGCAATGGTCCGCGA
CGAGGCTACCGGATACGTCGATGGTCTTCTCAAGAGATGACCAAGGAGCA
ATCGTGAAGGTCAGGGTCGCCTCAATCTTGCGTGTCAGTTGGCGACGATT
GTGTTTGTCCCCGTCGGCGCCTAATATTGAGTGCCGAAGTATGTAGAGGA
TAATATACTGTATGCTTGAATCGATTTTCGGGCAGGGGCCCGTATTGACT
ATTGTTTTGCGCTTTCCGGTGTTTCCGATGCTGCGGTATGGTCCAGGTCA
CCGTCGAGAAGCCGGACCTAGGCGGTCGCGGGTCAGTCAAATCCATAACG
TTGAACGGCATCGATGTGATGAACTGGATGAAAGACAATGCCCTGTCAAC
GGCTGAGGGACACATCTGCAAAAAGCAAGACCTGGCACTGGTGAGGAAAA
TATTAGCAGTTTTGTTGGCAACACAGGGTGCTCGAGTGTCGTCCATGCCG
CGCTTTTTCCTGGGTAGGCTCTTCGTGGTATGCGCATACATAGCTCCCGA
CGTCTTGAGGGGTCTGGGTCCAATATTGTGGCTGGACGTGATCTGCGACT
GAGATATACGCCGCCCAACATGTTGCGTTTGGCGTTTGGTCTGTTTTGTT
CTCGCAGATGCTTAGCGAAGTTTCTGGTGTCCAGCCTTGTCGTGGTATCT
CCAGGCAGCACGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1476:5267..6880+

>mRNA_P-littoralis_Contig1476.3.4 ID=mRNA_P-littoralis_Contig1476.3.4|Name=mRNA_P-littoralis_Contig1476.3.4|organism=Pylaiella littoralis U1_48|type=CDS|length=756bp|location=Sequence derived from alignment at P-littoralis_Contig1476:5267..6880+ (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGAGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTTGGC
TTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGTGTG
CCTCTGGCTCAAGCACCACAAGCGGTCAGGCAAGGTCAAGACAGGAACCT
CCGCCCAAGCGTTGGTATGGGTGCGTGAATGGCTAGCCACCTCCGAGTAT
GCCGGAATAGTGGGATTCGACGCGACGCCCTACTCAATTGGACACATGTT
CGTCCGCCTTCTGAAGCACAAGAACTACTTCTGTCTGGACGTGGCTGGTA
TGCAGAAGAAAGCGAAGGTGTATTCCATCCAGTCGTGCGAGTGGGGCGAT
ACGTACATCGACCTCTTGAAGTCGTTGCCCTTGCAATGGTCCGCGACGAG
GCTACCGGATACGTCGATGGTCTTCTCAAGAGATGACCAAGGAGCAATCG
TGAAGGTCACCGTCGAGAAGCCGGACCTAGGCGGTCGCGGGTCAGTCAAA
TCCATAACGTTGAACGGCATCGATGTGATGAACTGGATGAAAGACAATGC
CCTGTCAACGGCTGAGGGACACATCTGCAAAAAGCAAGACCTGGCACTGA
TGCTTAGCGAAGTTTCTGGTGTCCAGCCTTGTCGTGGTATCTCCAGGCAG
CACGTT
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