mRNA_P-littoralis_Contig1474.1.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5K7F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F0_9PHAE) HSP 1 Score: 127 bits (319), Expect = 6.380e-28 Identity = 77/200 (38.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query: 958 KTEAALWAPRPNKLYWCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVFPPPPVPEFKAVEEFVTTGATWLRM 1551
++ A+ W R +L W +RGKRG ++ ++ LQ +G V T R++SG+++ F PVGN+ +SV D FDL C++++ +L++ S A A ARL P+E AM AR R ALR + D R + A LP FR W A+ LW+ LP PPESF F PPPVP F + F +G+ LRM
Sbjct: 202 ESTASAW--RAGRLMWALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPMEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRFDGINGFSMSGSIALRM 397
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5K5G9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G9_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.580e-27 Identity = 73/185 (39.46%), Postives = 100/185 (54.05%), Query Frame = 1
Query: 1003 WCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVFPPPPVPEFKAVEEFVTTGATWLRM 1551
W +RGKRG ++ + LQ +G V T R++SG+++ F PVGN+ +SV D FDL C++++ +L++ S A A ARL P+E AM AR R ALR + D R + A LP FR W A+ LW+ LP PPESF F PPPVP F + F +G+ LRM
Sbjct: 2 WALRGKRGIDVPKKETLQTMMGGTVTGTVKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPMEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRFDGINGFSMSGSIALRM 184
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5K433_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K433_9PHAE) HSP 1 Score: 120 bits (302), Expect = 3.420e-27 Identity = 72/185 (38.92%), Postives = 100/185 (54.05%), Query Frame = 1
Query: 1003 WCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVFPPPPVPEFKAVEEFVTTGATWLRM 1551
W +RGKRG ++ ++ LQ +G V T R++SG+++ F PVGN+ +SV D FDL C++++ +L++ S A A ARL P+E AM AR R ALR + D R + A LP FR W A+ LW+ P PPESF F PPPVP F + F +G+ LRM
Sbjct: 2 WALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPMEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWASAVMLWMLPMQNFPVPPESFERFGPPPVPRFDGINGFSMSGSIALRM 184
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5JN35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN35_9PHAE) HSP 1 Score: 127 bits (319), Expect = 3.710e-27 Identity = 77/200 (38.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query: 958 KTEAALWAPRPNKLYWCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVFPPPPVPEFKAVEEFVTTGATWLRM 1551
++ A+ W R +L W +RGKRG ++ ++ LQ +G V T R++SG+++ F PVGN+ +SV D FDL C++++ +L++ S A A ARL P+E AM AR R ALR + D R + A LP FR W A+ LW+ LP PPESF F PPPVP F + F +G+ LRM
Sbjct: 1665 ESTASAW--RAGRLMWALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPMEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRFDGINGFSMSGSIALRM 1860
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5L5C2_9PHAE (C3H1-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C2_9PHAE) HSP 1 Score: 123 bits (309), Expect = 1.120e-26 Identity = 75/200 (37.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query: 958 KTEAALWAPRPNKLYWCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVFPPPPVPEFKAVEEFVTTGATWLRM 1551
++ A+ W R +L W +RGKRG ++ ++ LQ +G V T R++SG+++ F PVGN+ +SV D FDL C++++ +L++ S A A ARL P+E AM AR R ALR + D R + A LP FR W A+ LW+ LP PPESF F PPPVP + F +G+ LR+
Sbjct: 202 ESTASAW--RAGRLMWALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGKLSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPMEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRLDGINGFSMSGSIALRI 397
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5K9I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I5_9PHAE) HSP 1 Score: 113 bits (282), Expect = 2.110e-23 Identity = 97/293 (33.11%), Postives = 137/293 (46.76%), Query Frame = 1
Query: 640 IAGLS---MGENRGAAGAVGSAAGPAQGAMTAADAGHLRQDMQRLMDLMSGFSARV--------AGLESRVINAAPVVGQGGAAVNGPVLGGVPLLGPAGGAVMGFDMQQHVARDARKTEAALWAPRPNKLYWCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVF 1479
+AGLS +G + AG AG A GA A L+QD + L+ +S + G S V+ G G G L V P A D Q+ A+ ++ A+ W R +L W +RGKRG ++ ++ LQ+ +G V T R++SG+ + F PVGN+ +SV D FDL C++++ +L++ S A A ARL P+E AM AR R ALR + D R + A LP FR W A+ LW+ LP PPESF F
Sbjct: 114 MAGLSVEGLGGSSAVAGGNNLGAGAASGAPGALQLVMLQQDNENLVAKVSALEQSLQQLLNNQGGGAGSHVVGPHAADGAGAEVAVGAGL--VAAAAPGSDA----DRQRRFAKAEFESTASAW--RAGRLMWALRGKRGIDVPNKETLQSMMGGTVTGTDRTLQQLRTMSGLIVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPIEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWASAVMLWMLPMQNLPVPPESFERF 396 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1474.1.1 >prot_P-littoralis_Contig1474.1.1 ID=prot_P-littoralis_Contig1474.1.1|Name=mRNA_P-littoralis_Contig1474.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=316bp MLAASTQRIAGLSMGENRGAAGAVGSAAGPAQGAMTAADAGHLRQDMQRLback to top mRNA from alignment at P-littoralis_Contig1474:5182..6744- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1474.1.1 ID=mRNA_P-littoralis_Contig1474.1.1|Name=mRNA_P-littoralis_Contig1474.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1563bp|location=Sequence derived from alignment at P-littoralis_Contig1474:5182..6744- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1474:5182..6744- >mRNA_P-littoralis_Contig1474.1.1 ID=mRNA_P-littoralis_Contig1474.1.1|Name=mRNA_P-littoralis_Contig1474.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=948bp|location=Sequence derived from alignment at P-littoralis_Contig1474:5182..6744- (Pylaiella littoralis U1_48)back to top |