mRNA_P-littoralis_Contig1474.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1474.1.1
Unique NamemRNA_P-littoralis_Contig1474.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5K7F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F0_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 6.380e-28
Identity = 77/200 (38.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query:  958 KTEAALWAPRPNKLYWCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVFPPPPVPEFKAVEEFVTTGATWLRM 1551
            ++ A+ W  R  +L W +RGKRG ++ ++  LQ  +G  V  T       R++SG+++  F PVGN+  +SV D FDL C++++ +L++  S      A A   ARL P+E AM  AR   R  ALR + D      R + A LP   FR W  A+ LW+     LP PPESF  F PPPVP F  +  F  +G+  LRM
Sbjct:  202 ESTASAW--RAGRLMWALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPMEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRFDGINGFSMSGSIALRM 397          
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5K5G9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G9_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.580e-27
Identity = 73/185 (39.46%), Postives = 100/185 (54.05%), Query Frame = 1
Query: 1003 WCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVFPPPPVPEFKAVEEFVTTGATWLRM 1551
            W +RGKRG ++  +  LQ  +G  V  T       R++SG+++  F PVGN+  +SV D FDL C++++ +L++  S      A A   ARL P+E AM  AR   R  ALR + D      R + A LP   FR W  A+ LW+     LP PPESF  F PPPVP F  +  F  +G+  LRM
Sbjct:    2 WALRGKRGIDVPKKETLQTMMGGTVTGTVKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPMEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRFDGINGFSMSGSIALRM 184          
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5K433_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K433_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.420e-27
Identity = 72/185 (38.92%), Postives = 100/185 (54.05%), Query Frame = 1
Query: 1003 WCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVFPPPPVPEFKAVEEFVTTGATWLRM 1551
            W +RGKRG ++ ++  LQ  +G  V  T       R++SG+++  F PVGN+  +SV D FDL C++++ +L++  S      A A   ARL P+E AM  AR   R  ALR + D      R + A LP   FR W  A+ LW+      P PPESF  F PPPVP F  +  F  +G+  LRM
Sbjct:    2 WALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPMEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWASAVMLWMLPMQNFPVPPESFERFGPPPVPRFDGINGFSMSGSIALRM 184          
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5JN35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN35_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.710e-27
Identity = 77/200 (38.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query:  958 KTEAALWAPRPNKLYWCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVFPPPPVPEFKAVEEFVTTGATWLRM 1551
            ++ A+ W  R  +L W +RGKRG ++ ++  LQ  +G  V  T       R++SG+++  F PVGN+  +SV D FDL C++++ +L++  S      A A   ARL P+E AM  AR   R  ALR + D      R + A LP   FR W  A+ LW+     LP PPESF  F PPPVP F  +  F  +G+  LRM
Sbjct: 1665 ESTASAW--RAGRLMWALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPMEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRFDGINGFSMSGSIALRM 1860          
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5L5C2_9PHAE (C3H1-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C2_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.120e-26
Identity = 75/200 (37.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query:  958 KTEAALWAPRPNKLYWCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVFPPPPVPEFKAVEEFVTTGATWLRM 1551
            ++ A+ W  R  +L W +RGKRG ++ ++  LQ  +G  V  T       R++SG+++  F PVGN+  +SV D FDL C++++ +L++  S      A A   ARL P+E AM  AR   R  ALR + D      R + A LP   FR W  A+ LW+     LP PPESF  F PPPVP    +  F  +G+  LR+
Sbjct:  202 ESTASAW--RAGRLMWALRGKRGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGKLSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPMEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWANAVMLWMLPMQNLPVPPESFERFGPPPVPRLDGINGFSMSGSIALRI 397          
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Match: A0A6H5K9I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.110e-23
Identity = 97/293 (33.11%), Postives = 137/293 (46.76%), Query Frame = 1
Query:  640 IAGLS---MGENRGAAGAVGSAAGPAQGAMTAADAGHLRQDMQRLMDLMSGFSARV--------AGLESRVINAAPVVGQGGAAVNGPVLGGVPLLGPAGGAVMGFDMQQHVARDARKTEAALWAPRPNKLYWCVRGKRGAEIVSEIDLQNALGTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTLLRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRA-ALRGLQDVL-EDRRLSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVF 1479
            +AGLS   +G +   AG     AG A GA  A     L+QD + L+  +S     +         G  S V+      G G     G  L  V    P   A    D Q+  A+   ++ A+ W  R  +L W +RGKRG ++ ++  LQ+ +G  V  T       R++SG+ +  F PVGN+  +SV D FDL C++++ +L++  S      A A   ARL P+E AM  AR   R  ALR + D      R + A LP   FR W  A+ LW+     LP PPESF  F
Sbjct:  114 MAGLSVEGLGGSSAVAGGNNLGAGAASGAPGALQLVMLQQDNENLVAKVSALEQSLQQLLNNQGGGAGSHVVGPHAADGAGAEVAVGAGL--VAAAAPGSDA----DRQRRFAKAEFESTASAW--RAGRLMWALRGKRGIDVPNKETLQSMMGGTVTGTDRTLQQLRTMSGLIVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFGLSATSADNAAAL--ARLLPIEQAMLSARGTLRMQALRHMGDFQGRGSRGTFADLPNDDFREWASAVMLWMLPMQNLPVPPESFERF 396          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1474.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K7F0_9PHAE6.380e-2838.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5G9_9PHAE1.580e-2739.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K433_9PHAE3.420e-2738.92C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JN35_9PHAE3.710e-2738.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5C2_9PHAE1.120e-2637.50C3H1-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5K9I5_9PHAE2.110e-2333.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1474contigP-littoralis_Contig1474:5182..6744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1563
Hectar predicted targeting categoryother localisation
Exons1
Cds size948
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789695.6482983-CDS-P-littoralis_Contig1474:5181..61291680789695.6482983-CDS-P-littoralis_Contig1474:5181..6129Pylaiella littoralis U1_48CDSP-littoralis_Contig1474 5182..6129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789695.6593843-UTR-P-littoralis_Contig1474:6129..67441680789695.6593843-UTR-P-littoralis_Contig1474:6129..6744Pylaiella littoralis U1_48UTRP-littoralis_Contig1474 6130..6744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1474.1.1prot_P-littoralis_Contig1474.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1474 5182..6129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1474.1.1

>prot_P-littoralis_Contig1474.1.1 ID=prot_P-littoralis_Contig1474.1.1|Name=mRNA_P-littoralis_Contig1474.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=316bp
MLAASTQRIAGLSMGENRGAAGAVGSAAGPAQGAMTAADAGHLRQDMQRL
MDLMSGFSARVAGLESRVINAAPVVGQGGAAVNGPVLGGVPLLGPAGGAV
MGFDMQQHVARDARKTEAALWAPRPNKLYWCVRGKRGAEIVSEIDLQNAL
GTQVYVTSSIYAAFRSLSGIDITWFVPVGNAVSISVEDQFDLACSSVMTL
LRYDGSRGDDFGADARCDARLAPLEAAMDRARKGFRAALRGLQDVLEDRR
LSIASLPTQGFRAWGEALALWIFRFSALPNPPESFSVFPPPPVPEFKAVE
EFVTTGATWLRMIAGS
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mRNA from alignment at P-littoralis_Contig1474:5182..6744-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1474.1.1 ID=mRNA_P-littoralis_Contig1474.1.1|Name=mRNA_P-littoralis_Contig1474.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1563bp|location=Sequence derived from alignment at P-littoralis_Contig1474:5182..6744- (Pylaiella littoralis U1_48)
AATACAGCAGGACATGTGTGAATCGAAGTTGGTGATGCAGGGATAATCCC TGCTCACTCGTTGCCCTGACGCTCGTGAGCAAGAACGAGCGAGTGGGTTG CAGCCAGGGGGTATCTGGTAGTAGACCTGCTGTCTTCTTTCGTCTGTCTG CTAGACCTGTCTGCAAGTTCTTTCATCGGTCAGCTTCGTTTCTTCTTCTC TATATTCTTTGGGGTTGAACTTCGGTCAGAGGAGTGCAACAGCGAGATGG CATCTGAGGAGCTAGAAGAGCAAATTGACGTTGGAGGTGGGAAGGGCAAG GGCAGGGCCCTAGAGCAGTCAACTTCTGTCGGGGATACCGAAGCGGTCGT GGCGCAGGCGGTACAGGCTGCGGCCGTGGCGGCGGCGATAGCGGCAGCGA CGGGTGGTGCGTCGGCGTCGCCGATTGCCGAAGACAACGTCCTGACGGAG CAATAACAGCAGGAGACCGAAAATGAAGTTGCACTGCTGCGGCGGCAAAC CGAAGTAGAGGCTGCACTGCGGCAAACACGGGATGTAGCTCAACAGCAAC CGGCACCTCGTCAAGGCGCTCAACAGCCGCAGGGGGAGGCCCGTCGGGAC TCGGACGTGCAGGAAATGCTGGCCGCATCGACACAGCGGATTGCAGGCCT GTCCATGGGCGAGAATCGCGGGGCGGCTGGAGCAGTCGGCAGTGCAGCCG GCCCTGCTCAAGGGGCGATGACTGCTGCTGATGCGGGCCATCTTCGCCAG GACATGCAACGTCTGATGGACCTCATGAGCGGTTTTTCTGCTCGCGTCGC CGGGCTGGAGTCTCGGGTCATCAACGCCGCCCCTGTCGTCGGTCAGGGCG GGGCCGCCGTGAATGGCCCTGTGCTGGGTGGAGTGCCTCTCCTGGGTCCG GCGGGAGGTGCCGTCATGGGCTTCGACATGCAGCAGCACGTGGCCCGGGA CGCGAGGAAGACCGAGGCAGCGTTGTGGGCGCCGCGTCCCAATAAGCTCT ACTGGTGTGTTCGCGGAAAGCGGGGAGCGGAGATCGTGAGCGAGATCGAC CTCCAGAATGCTCTTGGTACACAGGTATACGTTACGTCAAGTATATACGC GGCGTTTCGTTCGCTTTCGGGCATCGACATCACGTGGTTTGTGCCTGTAG GCAATGCCGTGTCTATTTCGGTTGAAGATCAGTTCGACTTGGCGTGTAGT TCGGTGATGACGTTGCTCCGGTACGATGGTTCACGGGGCGATGATTTTGG TGCCGACGCCCGGTGTGATGCCCGCTTGGCGCCGCTGGAAGCGGCTATGG ACCGCGCGCGGAAAGGTTTCCGGGCTGCCCTTCGGGGGCTCCAGGATGTG CTCGAGGACCGACGCTTGTCGATTGCGTCTCTCCCGACCCAAGGTTTCCG GGCGTGGGGGGAGGCACTTGCGTTGTGGATTTTTCGTTTCTCCGCTCTCC CGAACCCGCCCGAGTCATTCAGCGTTTTCCCTCCGCCGCCGGTGCCGGAA TTTAAGGCCGTCGAAGAATTCGTTACAACGGGCGCTACATGGCTCCGGAT GATCGCGGGCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1474:5182..6744-

>mRNA_P-littoralis_Contig1474.1.1 ID=mRNA_P-littoralis_Contig1474.1.1|Name=mRNA_P-littoralis_Contig1474.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=948bp|location=Sequence derived from alignment at P-littoralis_Contig1474:5182..6744- (Pylaiella littoralis U1_48)
ATGCTGGCCGCATCGACACAGCGGATTGCAGGCCTGTCCATGGGCGAGAA
TCGCGGGGCGGCTGGAGCAGTCGGCAGTGCAGCCGGCCCTGCTCAAGGGG
CGATGACTGCTGCTGATGCGGGCCATCTTCGCCAGGACATGCAACGTCTG
ATGGACCTCATGAGCGGTTTTTCTGCTCGCGTCGCCGGGCTGGAGTCTCG
GGTCATCAACGCCGCCCCTGTCGTCGGTCAGGGCGGGGCCGCCGTGAATG
GCCCTGTGCTGGGTGGAGTGCCTCTCCTGGGTCCGGCGGGAGGTGCCGTC
ATGGGCTTCGACATGCAGCAGCACGTGGCCCGGGACGCGAGGAAGACCGA
GGCAGCGTTGTGGGCGCCGCGTCCCAATAAGCTCTACTGGTGTGTTCGCG
GAAAGCGGGGAGCGGAGATCGTGAGCGAGATCGACCTCCAGAATGCTCTT
GGTACACAGGTATACGTTACGTCAAGTATATACGCGGCGTTTCGTTCGCT
TTCGGGCATCGACATCACGTGGTTTGTGCCTGTAGGCAATGCCGTGTCTA
TTTCGGTTGAAGATCAGTTCGACTTGGCGTGTAGTTCGGTGATGACGTTG
CTCCGGTACGATGGTTCACGGGGCGATGATTTTGGTGCCGACGCCCGGTG
TGATGCCCGCTTGGCGCCGCTGGAAGCGGCTATGGACCGCGCGCGGAAAG
GTTTCCGGGCTGCCCTTCGGGGGCTCCAGGATGTGCTCGAGGACCGACGC
TTGTCGATTGCGTCTCTCCCGACCCAAGGTTTCCGGGCGTGGGGGGAGGC
ACTTGCGTTGTGGATTTTTCGTTTCTCCGCTCTCCCGAACCCGCCCGAGT
CATTCAGCGTTTTCCCTCCGCCGCCGGTGCCGGAATTTAAGGCCGTCGAA
GAATTCGTTACAACGGGCGCTACATGGCTCCGGATGATCGCGGGCAGC
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