mRNA_P-littoralis_Contig1473.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1473.6.1
Unique NamemRNA_P-littoralis_Contig1473.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1473.6.1 vs. uniprot
Match: A0A6H5LQW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQW7_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.050e-33
Identity = 71/130 (54.62%), Postives = 91/130 (70.00%), Query Frame = 3 
Query:   24 EMQQAAVVARTLAGEATAALRARPQQSQLGIPLSKDLLWGFRRVLVKFGGKKLSQADQKTFQALPIAYAAVSTKQAKQMNGPERGTRTTDSLVKFAIPNFLLLVKEAAHDLDLPLPLDLDEKINYTTLGT 413
            E  QAA  AR LA  A    R   +QS+LG+PLS DLL  FR VL+K GGK +S   QKTFQA PIAYAA++ KQ++QM+  ER    T +LV+FAIP F++L K AA  L+LPLPLD+++K+  T+LGT
Sbjct:    2 EADQAAA-ARALAQAAALRARDEAEQSKLGVPLSNDLLREFRLVLLKTGGKVMSALAQKTFQAFPIAYAAITCKQSEQMDKGERDVVCTKTLVEFAIPQFIVLAKAAAKKLELPLPLDIEDKMYLTSLGT 130
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BLAST of mRNA_P-littoralis_Contig1473.6.1 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.860e-32
Identity = 73/134 (54.48%), Postives = 95/134 (70.90%), Query Frame = 3 
Query:   21 SEMQQA--AVVARTLAGEATAALRARPQQSQLGIPLSKDLLWGFRRVLVKFGGKKLSQADQKTFQALPIAYAAVSTKQAKQMNGPERGTRTTDSLVKFAIPNFLLLVKEAAHDLDLPLPLDLDEKINYTTLGTG 416
            SE+ +A  A  AR LA EA    R   +QS+LG+PLS DLL  FR VL+K GGK +S   QKTFQA PIAYAA++ KQ++QM+  ER    T +LV+FAIP F++L K AA  L+LPLPLD+++K+  T+LGTG
Sbjct:   61 SEVMEADQAAAARALAQEAALRAREEAEQSKLGVPLSNDLLRAFRLVLLKTGGKVMSALAQKTFQAFPIAYAAITCKQSEQMDKGERDVVCTKTLVEFAIPQFIVLAKAAAKKLELPLPLDIEDKMYLTSLGTG 194
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1473.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LQW7_9PHAE1.050e-3354.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAW6_9PHAE1.860e-3254.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1473contigP-littoralis_Contig1473:8997..9579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size583
Hectar predicted targeting categoryother localisation
Exons1
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789695.5978324-UTR-P-littoralis_Contig1473:8996..90101680789695.5978324-UTR-P-littoralis_Contig1473:8996..9010Pylaiella littoralis U1_48UTRP-littoralis_Contig1473 8997..9010 +
1680789695.6149328-UTR-P-littoralis_Contig1473:9418..95791680789695.6149328-UTR-P-littoralis_Contig1473:9418..9579Pylaiella littoralis U1_48UTRP-littoralis_Contig1473 9419..9579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789695.6066825-CDS-P-littoralis_Contig1473:9010..94181680789695.6066825-CDS-P-littoralis_Contig1473:9010..9418Pylaiella littoralis U1_48CDSP-littoralis_Contig1473 9011..9418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1473.6.1prot_P-littoralis_Contig1473.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1473 9011..9418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1473.6.1

>prot_P-littoralis_Contig1473.6.1 ID=prot_P-littoralis_Contig1473.6.1|Name=mRNA_P-littoralis_Contig1473.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp
MASEMQQAAVVARTLAGEATAALRARPQQSQLGIPLSKDLLWGFRRVLVK
FGGKKLSQADQKTFQALPIAYAAVSTKQAKQMNGPERGTRTTDSLVKFAI
PNFLLLVKEAAHDLDLPLPLDLDEKINYTTLGTGT*
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mRNA from alignment at P-littoralis_Contig1473:8997..9579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1473.6.1 ID=mRNA_P-littoralis_Contig1473.6.1|Name=mRNA_P-littoralis_Contig1473.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=583bp|location=Sequence derived from alignment at P-littoralis_Contig1473:8997..9579+ (Pylaiella littoralis U1_48)
AGCAGTGGGTAATCATGGCGTCTGAGATGCAACAAGCAGCGGTAGTTGCG
CGGACGCTTGCTGGAGAGGCTACTGCAGCTTTACGGGCCAGACCTCAGCA
ATCGCAGCTCGGAATTCCCCTGAGCAAGGACCTGCTGTGGGGTTTTCGAC
GGGTACTGGTGAAGTTTGGCGGAAAGAAACTGAGCCAAGCAGACCAGAAG
ACCTTCCAGGCTCTCCCCATCGCGTACGCTGCCGTCTCCACCAAGCAGGC
AAAGCAGATGAACGGGCCAGAGCGGGGGACAAGAACGACGGACTCCCTCG
TCAAGTTCGCGATCCCGAACTTCCTCTTGTTGGTGAAGGAGGCGGCGCAT
GATCTCGATTTGCCCCTACCGTTGGACCTCGACGAGAAGATCAACTACAC
TACCTTGGGCACAGGTACATAGGATGAAAGGGTTGGGGTTGTGGCGACAG
GGCGTGTGACAGTTTTACCGCGGGAGAGTGTTGTCCGGGCGCCCGAGCAC
CTTCCGCTGATGTTGCTCAGTTCACATAATAGCGCGGTGATGCCACATAT
CCTATCTATGTGCTACTGCTGTAGAATGAAACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1473:8997..9579+

>mRNA_P-littoralis_Contig1473.6.1 ID=mRNA_P-littoralis_Contig1473.6.1|Name=mRNA_P-littoralis_Contig1473.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig1473:8997..9579+ (Pylaiella littoralis U1_48)
ATGGCGTCTGAGATGCAACAAGCAGCGGTAGTTGCGCGGACGCTTGCTGG
AGAGGCTACTGCAGCTTTACGGGCCAGACCTCAGCAATCGCAGCTCGGAA
TTCCCCTGAGCAAGGACCTGCTGTGGGGTTTTCGACGGGTACTGGTGAAG
TTTGGCGGAAAGAAACTGAGCCAAGCAGACCAGAAGACCTTCCAGGCTCT
CCCCATCGCGTACGCTGCCGTCTCCACCAAGCAGGCAAAGCAGATGAACG
GGCCAGAGCGGGGGACAAGAACGACGGACTCCCTCGTCAAGTTCGCGATC
CCGAACTTCCTCTTGTTGGTGAAGGAGGCGGCGCATGATCTCGATTTGCC
CCTACCGTTGGACCTCGACGAGAAGATCAACTACACTACCTTGGGCACAG
GTACATAG
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