mRNA_P-littoralis_Contig1472.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1472.2.1
Unique NamemRNA_P-littoralis_Contig1472.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1472.2.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.650e-10
Identity = 43/128 (33.59%), Postives = 61/128 (47.66%), Query Frame = 1 
Query:   49 GLVRTVRGLPQPRGAAPAI-WYLRGHGQLFSSPVLFNCLL-WHGLFAVGTLKDIHRGASQAV----------------RYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNNGDFVP 378
            GLV+  + L Q R    A   Y+R  G++  +   F   + W     V  L  +H      +                 YWT T+Q  R+KG+M  ARFGFL F QWKDSK+V+ LST+H++    +P
Sbjct:  564 GLVQNTKQLVQDRNYWTATRQYVRKKGEMVLARFGFLVFVQWKDSKVVKFLSTVHLSPKHVLPKECRYRGSHPDHADTXYWTATRQYVRKKGEMVLARFGFLVFVQWKDSKVVKFLSTVHLSPKHVLP 691
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1472.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIB8_9PHAE1.650e-1033.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1472contigP-littoralis_Contig1472:8057..9322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6500.XP_005112528.1
Preferred namepgbd4
PFAMsDDE_Tnp_1_7,Tnp_zf-ribbon_2
Model size443
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.82e-05
EggNOG OGs28PUT@1|root,2QWHD@2759|Eukaryota,38EA4@33154|Opisthokonta,3BMU4@33208|Metazoa,3CZSB@33213|Bilateria
DescriptionTransposase IS4
Cds size441
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789695.4717898-CDS-P-littoralis_Contig1472:8056..84451680789695.4717898-CDS-P-littoralis_Contig1472:8056..8445Pylaiella littoralis U1_48CDSP-littoralis_Contig1472 8057..8445 +
1680789695.4831843-CDS-P-littoralis_Contig1472:9268..93201680789695.4831843-CDS-P-littoralis_Contig1472:9268..9320Pylaiella littoralis U1_48CDSP-littoralis_Contig1472 9269..9320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1472.2.1prot_P-littoralis_Contig1472.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1472 8057..9320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1472.2.1

>prot_P-littoralis_Contig1472.2.1 ID=prot_P-littoralis_Contig1472.2.1|Name=mRNA_P-littoralis_Contig1472.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp
EASEVGRLPARPDLPDGLVRTVRGLPQPRGAAPAIWYLRGHGQLFSSPVL
FNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFL
TFTQWKDSKLVRLLSTIHVNNGDFVPIPYSKFAPGKKKETLWQPLCR
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mRNA from alignment at P-littoralis_Contig1472:8057..9322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1472.2.1 ID=mRNA_P-littoralis_Contig1472.2.1|Name=mRNA_P-littoralis_Contig1472.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1266bp|location=Sequence derived from alignment at P-littoralis_Contig1472:8057..9322+ (Pylaiella littoralis U1_48)
GAAGCTTCGGAAGTGGGCAGGTTGCCCGCTCGGCCGGACTTGCCGGATGG
TCTTGTTCGTACTGTTCGGGGCTTGCCCCAACCTCGCGGAGCAGCTCCTG
CAATCTGGTACCTACGTGGCCATGGACAACTTTTTTCTTCGCCTGTCCTC
TTCAACTGCCTTCTTTGGCACGGGTTGTTCGCTGTGGGTACACTGAAGGA
CATTCACCGGGGAGCCAGCCAGGCCGTGCGGTATTGGACCACCACCAAGC
AGACCCCGAGGCAGAAGGGGGACATGGCTTTCGCGAGGTTCGGGTTTTTG
ACCTTCACGCAGTGGAAGGACTCCAAGCTTGTCCGGCTTCTCTCCACCAT
CCACGTCAACAATGGAGACTTCGTCCCAATCCCGTACAGGTGAAGCTTGC
GTCTAGTCGTTGACTAAACTGATCGCCGGTAGTCCAACAAACACTCTTCA
ACCTGCAGTTTTGGCGCGTCTGGAGCGAGAGGTTGAGGTCTGAATGCAGG
GGGGGAGTGTAGTGGTATTTCGCGTACGCCCTGTGCGCATTGCGTGTCGT
CGGTTCGCGCCCGTCCCCGTTTGGACTTAGGGTTAGAAATCGTCATTGCC
CGTCTTAGTAAAACAGCAGCAGTGTTCATTTTTCCGCCGTCATTGCATAC
TGTAATCCACACTGTTCACCTCCAGTACGccCCCCCCTCCCCTTATTTTC
GGTCAAAATACATGAACACATGGCACCCGGAGTAGTAAGTCAAACGGCAG
ATGCGCGAGCATGGAGGGGATCAAAAATAACTGCCGACATTGTCCCTTTG
TACGATAGAAAGAGGGCGTGCTGTAAGTCACGTTTAGCGATAGCTATCTA
CAGGGCCGCATATATAATGTGTGTGTTGTGCGTGCACTTGGCCTTCGGGC
TTTTCTCCCGGGGTAAGGTTGTAGAACTGTCTTCGTATCCCCGCGCTCGG
AATATTTGACGCCAGGTTTTGATTGTTTCACTTTTTATTTAACAAACACA
ATCTGACAGGATTCCCCAGGAGTGCTGTTCAAAATAAAACATTACCAAGA
GGGAAAAACAGACGTGGTTGCTGCGCGCAACTCACGTTCTTTTATTGCCT
TTTTGGACCCCCACCTCAGGCGTTTCCTGCCAAAACTGGTTTTTGACGCT
CGTTAAAACATCGCCCTGTCCCCTCACCTCCCACACTTTCCGTTCTTACT
TTGTTCTTCCAGTAAATTCGCCCCGGGAAAAAAGAAGGAGACACTGTGGC
AGCCGCTGTGTCGACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1472:8057..9322+

>mRNA_P-littoralis_Contig1472.2.1 ID=mRNA_P-littoralis_Contig1472.2.1|Name=mRNA_P-littoralis_Contig1472.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig1472:8057..9322+ (Pylaiella littoralis U1_48)
GAAGCTTCGGAAGTGGGCAGGTTGCCCGCTCGGCCGGACTTGCCGGATGG
TCTTGTTCGTACTGTTCGGGGCTTGCCCCAACCTCGCGGAGCAGCTCCTG
CAATCTGGTACCTACGTGGCCATGGACAACTTTTTTCTTCGCCTGTCCTC
TTCAACTGCCTTCTTTGGCACGGGTTGTTCGCTGTGGGTACACTGAAGGA
CATTCACCGGGGAGCCAGCCAGGCCGTGCGGTATTGGACCACCACCAAGC
AGACCCCGAGGCAGAAGGGGGACATGGCTTTCGCGAGGTTCGGGTTTTTG
ACCTTCACGCAGTGGAAGGACTCCAAGCTTGTCCGGCTTCTCTCCACCAT
CCACGTCAACAATGGAGACTTCGTCCCAATCCCGTACAGTAAATTCGCCC
CGGGAAAAAAGAAGGAGACACTGTGGCAGCCGCTGTGTCGA
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