mRNA_P-littoralis_Contig1470.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1470.4.1 vs. uniprot
Match: A0A2D8LJR4_9FLAO (DEAD/DEAH box helicase n=2 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D8LJR4_9FLAO) HSP 1 Score: 380 bits (976), Expect = 2.340e-125 Identity = 197/203 (97.04%), Postives = 199/203 (98.03%), Query Frame = 1
Query: 1 MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRAIQLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDFLPWRRK 609
MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRA+QLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDF +K
Sbjct: 1 MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRAMQLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDFFTMAQK 203
BLAST of mRNA_P-littoralis_Contig1470.4.1 vs. uniprot
Match: A0A848ZMV2_9FLAO (DEAD/DEAH box helicase n=1 Tax=Arenibacter sp. TaxID=1872633 RepID=A0A848ZMV2_9FLAO) HSP 1 Score: 326 bits (836), Expect = 2.500e-104 Identity = 165/197 (83.76%), Postives = 182/197 (92.39%), Query Frame = 1
Query: 1 MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRAIQLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDF 591
MQSFD+FKIS QL+Y I DLG+T PTPIQ++AFPVIASGKDVVGIAQTGTGKTF YMLPILQ LPFSK+K+PRVLILVPTRELV+QVV EI+KFSKYL NRV+GVYGGTNIN QKA L EGQDIVV TPGRLYDLVLSRA++L SIKKLVIDEVDVMLDLGFRFQLTNIFDLLP+ RQNIMFSATMT+DI+A+I+ F
Sbjct: 1 MQSFDEFKISNQLRYAIDDLGYTSPTPIQSKAFPVIASGKDVVGIAQTGTGKTFGYMLPILQMLPFSKEKHPRVLILVPTRELVLQVVEEIKKFSKYLNNRVVGVYGGTNINTQKALLEEGQDIVVGTPGRLYDLVLSRALRLNSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPKSRQNIMFSATMTEDIDAIISQF 197
BLAST of mRNA_P-littoralis_Contig1470.4.1 vs. uniprot
Match: I3CAB4_9FLAO (DNA/RNA helicase, superfamily II n=2 Tax=Joostella TaxID=453850 RepID=I3CAB4_9FLAO) HSP 1 Score: 318 bits (816), Expect = 3.750e-101 Identity = 160/197 (81.22%), Postives = 176/197 (89.34%), Query Frame = 1
Query: 1 MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRAIQLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDF 591
MQSFD+FKIS QLQY I DLGF PTPIQ +AFPV+ SGKDV+GIAQTGTGKTFAYMLPILQGL FSKQ NPRVL++VPTRELVVQVV EI KFSKY+ RV GVYGGTNIN QK ALA+G DI+VATPGRLYDLV+SRA+QLK++KKLVIDEVDVMLDLGFRFQL NIF+LLP +RQNIMFSATMTD+IE LI DF
Sbjct: 9 MQSFDEFKISNQLQYAIEDLGFENPTPIQEKAFPVVMSGKDVIGIAQTGTGKTFAYMLPILQGLKFSKQVNPRVLVMVPTRELVVQVVEEIAKFSKYMNIRVEGVYGGTNINRQKEALAQGTDIIVATPGRLYDLVISRAVQLKAVKKLVIDEVDVMLDLGFRFQLNNIFELLPERRQNIMFSATMTDEIETLIQDF 205
BLAST of mRNA_P-littoralis_Contig1470.4.1 vs. uniprot
Match: A0A2N0EVM4_9FLAO (ATP-dependent RNA helicase RhlE n=1 Tax=Ulvibacter sp. MAR_2010_11 TaxID=1250229 RepID=A0A2N0EVM4_9FLAO) HSP 1 Score: 318 bits (815), Expect = 3.790e-101 Identity = 164/197 (83.25%), Postives = 177/197 (89.85%), Query Frame = 1
Query: 1 MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRAIQLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDF 591
MQSFDDFKIS QLQY ITDLGF +PTPIQ++AF +I SGKDVVGIAQTGTGKTFAYMLPILQ LPF+KQ PRVL+LVPTRELVVQVV EIEKF KY +VLGVYGGTNIN QK ALA G DIVVATPGRLYDLVL RA+QLK+IKKLVIDEVDVMLDLGFRFQLTNIF+LLP +RQNIMFSATMT++IE LINDF
Sbjct: 1 MQSFDDFKISKQLQYAITDLGFEKPTPIQSEAFSIIVSGKDVVGIAQTGTGKTFAYMLPILQMLPFAKQIQPRVLVLVPTRELVVQVVEEIEKFGKYSDIKVLGVYGGTNINRQKEALALGADIVVATPGRLYDLVLCRALQLKAIKKLVIDEVDVMLDLGFRFQLTNIFELLPERRQNIMFSATMTEEIETLINDF 197
BLAST of mRNA_P-littoralis_Contig1470.4.1 vs. uniprot
Match: A0A5B7U002_9FLAO (DEAD/DEAH box helicase n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A5B7U002_9FLAO) HSP 1 Score: 316 bits (809), Expect = 3.020e-100 Identity = 159/197 (80.71%), Postives = 177/197 (89.85%), Query Frame = 1
Query: 1 MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRAIQLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDF 591
M++FDDFKIS QL Y I DLGFT PTPIQ++AFPVIASGK+V+GIAQTGTGKT AYMLPILQ L FS++K+PRVL+LVPTRELVVQVV EI KF KYL NRV+G+YGGTNIN QKA L +G DI+VATPGRLYDLVLSRA+QLKSIKKLVIDEVDVMLDLGFRFQLTN+FDLLP RQNIMFSATMTDD++ LI DF
Sbjct: 1 METFDDFKISKQLGYAIDDLGFTTPTPIQSEAFPVIASGKNVIGIAQTGTGKTLAYMLPILQQLKFSEEKHPRVLVLVPTRELVVQVVEEINKFGKYLNNRVIGLYGGTNINTQKAMLDQGYDIIVATPGRLYDLVLSRALQLKSIKKLVIDEVDVMLDLGFRFQLTNLFDLLPVNRQNIMFSATMTDDVDQLITDF 197
BLAST of mRNA_P-littoralis_Contig1470.4.1 vs. uniprot
Match: K2NYP9_9FLAO (DNA/RNA helicase n=1 Tax=Galbibacter marinus TaxID=555500 RepID=K2NYP9_9FLAO) HSP 1 Score: 312 bits (799), Expect = 1.040e-98 Identity = 158/197 (80.20%), Postives = 174/197 (88.32%), Query Frame = 1
Query: 1 MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRAIQLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDF 591
M SFD+F IS QL+Y I DLGF PTPIQ ++FPV+ SG D++GIAQTGTGKTFAYMLPILQ L FSKQ NPRVL++VPTRELVVQVV EIEKFSKYL RV GVYGGTNIN QK ALA+G DIVVATPGRLYDLV+SRA+QLK+IKKLVIDEVDVMLDLGFRFQL NIF+LLP +RQNIMFSATMTD+IE LINDF
Sbjct: 1 MASFDEFNISNQLRYAIEDLGFENPTPIQEKSFPVVMSGTDIIGIAQTGTGKTFAYMLPILQQLKFSKQVNPRVLVMVPTRELVVQVVDEIEKFSKYLNIRVAGVYGGTNINRQKEALAQGTDIVVATPGRLYDLVISRALQLKAIKKLVIDEVDVMLDLGFRFQLNNIFELLPERRQNIMFSATMTDEIETLINDF 197
BLAST of mRNA_P-littoralis_Contig1470.4.1 vs. uniprot
Match: A0A846QTX6_9FLAO (ATP-dependent RNA helicase RhlE n=1 Tax=Saonia flava TaxID=523696 RepID=A0A846QTX6_9FLAO) HSP 1 Score: 311 bits (796), Expect = 2.690e-98 Identity = 159/203 (78.33%), Postives = 179/203 (88.18%), Query Frame = 1
Query: 1 MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRAIQLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDFLPWRRK 609
MQSF+DFKI+ QL+ ITDLGF +PTPIQ QAF VI SGKD+VGIAQTGTGKTFAYMLPILQ LPFSK+ +PRVL++VPTRELVVQVV EIEKF KY + RV GVYGGTN+N QK ALA+G DIVVATPGRLYDLVL +A+QLKS+KK+VIDEVDVMLDLGFRFQLTNIFDLLP +RQNIMFSATMTD+IE LI+DF +K
Sbjct: 1 MQSFEDFKINNQLRNAITDLGFEKPTPIQEQAFSVIMSGKDMVGIAQTGTGKTFAYMLPILQMLPFSKELHPRVLVVVPTRELVVQVVEEIEKFGKYSSVRVTGVYGGTNMNRQKEALAQGADIVVATPGRLYDLVLCKALQLKSVKKMVIDEVDVMLDLGFRFQLTNIFDLLPERRQNIMFSATMTDEIEVLIHDFFRGTQK 203
BLAST of mRNA_P-littoralis_Contig1470.4.1 vs. uniprot
Match: UPI0015BE9D24 (DEAD/DEAH box helicase n=2 Tax=Galbibacter TaxID=379068 RepID=UPI0015BE9D24) HSP 1 Score: 309 bits (792), Expect = 1.170e-97 Identity = 158/197 (80.20%), Postives = 174/197 (88.32%), Query Frame = 1
Query: 1 MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRAIQLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDF 591
M SF+DFKIS QL Y I DLGF +PTPIQ +AFPV+ SGKDV+GIAQTGTGKTFAYMLPILQ L FSKQ NPRVL++VPTRELVVQVV EI+KFSKYL RV GV+GGTNIN QK ALA+G DIVVATPGRLYDLV+SRA+ LKS+KKLVIDEVDVMLDLGFRFQL NIF+LLP +RQNIMFSATMT+DIE LI DF
Sbjct: 1 MSSFEDFKISKQLGYAIEDLGFEKPTPIQEKAFPVVMSGKDVIGIAQTGTGKTFAYMLPILQQLKFSKQVNPRVLVMVPTRELVVQVVEEIQKFSKYLNVRVEGVFGGTNINRQKEALAQGTDIVVATPGRLYDLVISRAVSLKSVKKLVIDEVDVMLDLGFRFQLNNIFELLPERRQNIMFSATMTEDIEMLILDF 197
BLAST of mRNA_P-littoralis_Contig1470.4.1 vs. uniprot
Match: F0RBI0_CELLC (DEAD/DEAH box helicase domain protein n=8 Tax=Cellulophaga TaxID=104264 RepID=F0RBI0_CELLC) HSP 1 Score: 309 bits (791), Expect = 1.510e-97 Identity = 152/197 (77.16%), Postives = 174/197 (88.32%), Query Frame = 1
Query: 1 MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRAIQLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDF 591
M+SF DF + QL Y I DLGFT PTPIQ +AFPV+ SGKD++GIAQTGTGKTFAYMLPILQ L FSKQKNPRVLILVPTRELV+QVV +I F+KY+ RV+GVYGGTN+N Q A+++G DI+VATPGRLYDLVL+RA+QLKSIKKLVIDEVDVMLDLGFRFQ+TNIF+LLP +RQNIMFSATMTDD+E LINDF
Sbjct: 1 MESFSDFNLKKQLHYAIDDLGFTTPTPIQKEAFPVVMSGKDMIGIAQTGTGKTFAYMLPILQDLAFSKQKNPRVLILVPTRELVLQVVEQINSFAKYINVRVMGVYGGTNMNTQAQAVSQGSDIIVATPGRLYDLVLARALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPTRRQNIMFSATMTDDVETLINDF 197
BLAST of mRNA_P-littoralis_Contig1470.4.1 vs. uniprot
Match: A0A6L9EZ24_9FLAO (DEAD/DEAH box helicase n=1 Tax=Flavobacteriaceae bacterium R38 TaxID=2697054 RepID=A0A6L9EZ24_9FLAO) HSP 1 Score: 309 bits (791), Expect = 1.510e-97 Identity = 156/197 (79.19%), Postives = 173/197 (87.82%), Query Frame = 1
Query: 1 MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTGKTFAYMLPILQGLPFSKQKNPRVLILVPTRELVVQVVAEIEKFSKYLTNRVLGVYGGTNINNQKAALAEGQDIVVATPGRLYDLVLSRAIQLKSIKKLVIDEVDVMLDLGFRFQLTNIFDLLPRQRQNIMFSATMTDDIEALINDF 591
M SF DF IS QLQY I DLGF +PTPIQ+QAF VI SGKD+VGIAQTGTGKT AYMLPILQ L FSKQ NPRVL++VPTRELV+QVV EIEKFSKY +NR++GVYGG NIN QK AL EG DI+VATPGRLYDLV+SRA+QLKSIKKLVIDEVDVMLDLGFRFQLTNIF+LLP +RQNIMFSATMT+ + A+I DF
Sbjct: 1 MDSFKDFTISKQLQYAIDDLGFEKPTPIQSQAFSVILSGKDMVGIAQTGTGKTLAYMLPILQELKFSKQANPRVLVMVPTRELVLQVVEEIEKFSKYKSNRIIGVYGGVNINTQKQALTEGSDIIVATPGRLYDLVISRALQLKSIKKLVIDEVDVMLDLGFRFQLTNIFELLPERRQNIMFSATMTEHVNAIIQDF 197 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1470.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1470.4.1 >prot_P-littoralis_Contig1470.4.1 ID=prot_P-littoralis_Contig1470.4.1|Name=mRNA_P-littoralis_Contig1470.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=206bp MQSFDDFKISTQLQYGITDLGFTQPTPIQAQAFPVIASGKDVVGIAQTGTback to top mRNA from alignment at P-littoralis_Contig1470:6227..7570+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1470.4.1 ID=mRNA_P-littoralis_Contig1470.4.1|Name=mRNA_P-littoralis_Contig1470.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1344bp|location=Sequence derived from alignment at P-littoralis_Contig1470:6227..7570+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1470:6227..7570+ >mRNA_P-littoralis_Contig1470.4.1 ID=mRNA_P-littoralis_Contig1470.4.1|Name=mRNA_P-littoralis_Contig1470.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig1470:6227..7570+ (Pylaiella littoralis U1_48)back to top |