mRNA_P-littoralis_Contig1470.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1470.3.1
Unique NamemRNA_P-littoralis_Contig1470.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1470.3.1 vs. uniprot
Match: A0A2D8LJW8_9FLAO (Por_Secre_tail domain-containing protein n=2 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D8LJW8_9FLAO)

HSP 1 Score: 476 bits (1226), Expect = 2.190e-169
Identity = 240/247 (97.17%), Postives = 242/247 (97.98%), Query Frame = 1
Query:   22 FSFLIMVFTTTVHSQCIEEQLTITGNQGPNIGSSMGQQFMACETGTIDKVELNVFAGSNAVMKFELYDSSQGFINLMWTVDNIAINGPGPLLIDLTTGTGTTLNVTQNQIYSMRFWNTGSSVYVLGTAFSSGDPYPNGAALNQFGEIQNFEPNKLDYYFRLAFNGASLSIDEIATQSVVAYPNPTSETLYFRGFTSEMVTLYSITGKQLFTKALENGSLDIQAFPSGMYFVAVPVGNRVAFSKVIKQ 762
            F FLIMVFTTT HSQCIEEQLTITGNQGPNIGSSMGQQFMACETGTIDKVELNVFAGSNAVMKFELYDSSQGF NLMWTVDNIAINGPGPLLIDLTTGTGTTLNVTQNQ YSMRFWNTGSSVYVLGTAFSSGDPYPNGAALNQFGEIQNFEPNKLDYYFRLAFNGASLSIDE+ATQSVVAYPNPTSETLYFRGFTSEMVTLYSITGKQLFTKALENGSL+IQA PSGMYFVAVPVGNRVAFSKVIKQ
Sbjct:   13 FLFLIMVFTTTGHSQCIEEQLTITGNQGPNIGSSMGQQFMACETGTIDKVELNVFAGSNAVMKFELYDSSQGFTNLMWTVDNIAINGPGPLLIDLTTGTGTTLNVTQNQTYSMRFWNTGSSVYVLGTAFSSGDPYPNGAALNQFGEIQNFEPNKLDYYFRLAFNGASLSIDELATQSVVAYPNPTSETLYFRGFTSEMVTLYSITGKQLFTKALENGSLNIQAIPSGMYFVAVPVGNRVAFSKVIKQ 259          
BLAST of mRNA_P-littoralis_Contig1470.3.1 vs. uniprot
Match: A0A7Y3BAY2_9FLAO (T9SS type A sorting domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y3BAY2_9FLAO)

HSP 1 Score: 60.1 bits (144), Expect = 1.050e-6
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  520 SLSIDEIATQSVVAYPNPTSETLYFRGFTSE-MVTLYSITGKQLFTKALE-NGSLDIQAFPSGMYFVAVPVGNRVAFSKVI 756
            SL IDE  T  V  YPNPTS T+YF+G  ++ +V ++S+ G+QL T  +  N SLD+     G+Y + V + NR +  K+I
Sbjct:  570 SLGIDEENTLDVQVYPNPTSNTIYFKGLLNDAIVEVFSVDGRQLSTNRISSNTSLDLN-ISKGVYLIKVTLRNRTSVLKII 649          
BLAST of mRNA_P-littoralis_Contig1470.3.1 vs. uniprot
Match: A0A1I5CMX0_9FLAO (Por secretion system C-terminal sorting domain-containing protein n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A1I5CMX0_9FLAO)

HSP 1 Score: 60.1 bits (144), Expect = 1.060e-6
Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  523 LSIDEIATQSVVAYPNPTSETLYFRGFT-SEMVTLYSITGKQLFTKALENGSLDIQAFPSGMYFVAVPVGNRVAFSKVI 756
            LSIDE +  +V  YPNPT+  +Y +G   S  +T+YS+ G+ LFTKA++N ++D+    SGM+ + +   +R    K++
Sbjct:  575 LSIDENSLDTVSVYPNPTTGRVYIKGLKKSANITVYSMDGRALFTKAVDNATIDLN-LSSGMFLMQITSEDRTTIKKIM 652          
BLAST of mRNA_P-littoralis_Contig1470.3.1 vs. uniprot
Match: UPI000374CA9A (T9SS type A sorting domain-containing protein n=1 Tax=Psychroflexus tropicus TaxID=197345 RepID=UPI000374CA9A)

HSP 1 Score: 60.1 bits (144), Expect = 1.100e-6
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  496 FRLAFNGASLSIDEIATQSVVAYPNPTSETLYFRGFTSEM--VTLYSITGKQLFTKALENGS-LDIQAFPSGMYFVAVPVGNRVAFSKVIKQ 762
            F+++ N +S   +E    S+  YPNPT+  +     +SE   ++LY ITGKQLFT  +   S +++ A+ SG+YFV +  G+R    K+IKQ
Sbjct:  670 FKVSENLSSTDFEE---SSIAIYPNPTNSKINIEVISSEELNISLYDITGKQLFTNTMIGSSQINLDAYSSGIYFVKLNDGSRSITKKIIKQ 758          
BLAST of mRNA_P-littoralis_Contig1470.3.1 vs. uniprot
Match: M7MKX0_9FLAO (Uncharacterized protein n=2 Tax=Xanthomarina gelatinilytica TaxID=1137281 RepID=M7MKX0_9FLAO)

HSP 1 Score: 56.6 bits (135), Expect = 3.100e-6
Identity = 28/85 (32.94%), Postives = 48/85 (56.47%), Query Frame = 1
Query:  523 LSIDEIATQSVVAYPNPTSETLYFR---GFTSEMVTLYSITGKQLFTKALENG----SLDIQAFPSGMYFVAVPVGNRVAFSKVI 756
            LS+DE A   ++ +PNP S  L  +    F    +T++S++GKQLF + ++N     +LD+  F SGMYF+    G  +   +++
Sbjct:   96 LSVDEFAASKLLMFPNPVSTELQIQLPNNFNEGTITIFSVSGKQLFGQFVKNDIKDVTLDLSQFKSGMYFIKYQFGEHIETKRLV 180          
BLAST of mRNA_P-littoralis_Contig1470.3.1 vs. uniprot
Match: A0A086AXP6_9FLAO (Fibronectin type-III domain-containing protein n=7 Tax=Chryseobacterium TaxID=59732 RepID=A0A086AXP6_9FLAO)

HSP 1 Score: 55.5 bits (132), Expect = 4.120e-5
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  511 NGASLSIDEIATQS--VVAYPNPTSETLYFRGFTSEM--VTLYSITGKQLFTKALEN--GSLDIQAFPSGMYFVAV-PVGNRVAFSKVIKQ 762
            +GA L  DE+ TQ   +  +PNP S+ L    F  ++  VT+Y++ G+Q+ TKA+ +  G++D+ AFPSG+Y + V  V N V   KVIK+
Sbjct: 1103 SGAVLRTDEVITQKDQLKVFPNPVSDILTV-SFDQKILSVTVYNMAGQQVLTKAINDTKGTIDVSAFPSGVYQMKVNAVNNFVKTVKVIKR 1192          
BLAST of mRNA_P-littoralis_Contig1470.3.1 vs. uniprot
Match: A0A2A5HPR9_9FLAO (CUB domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2A5HPR9_9FLAO)

HSP 1 Score: 55.1 bits (131), Expect = 5.380e-5
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  475 PNKLDYYFRL-AFNGASL---------------SIDEIATQSVVAYPNPTSETLYF--RGFTSEMVTLYSITGKQLFTKAL--ENGSLDIQAFP--SGMYFVAVPVGNRVAFSKVIKQ 762
            P   DYYF + A NGASL               SI+E+AT S +AYPNP +E L+   +   + +++LY   GK +FTK +  +N  LD+  +   +G Y + +   N+    K++KQ
Sbjct:  886 PFNQDYYFSVRAENGASLMTQVPTDGQWVVMATSINELATASFLAYPNPFTEQLHIELKQAQATVISLYDNNGKLIFTKKVNQQNLQLDLSKYQLKAGNYNLVITANNKTEVLKLLKQ 1003          
BLAST of mRNA_P-littoralis_Contig1470.3.1 vs. uniprot
Match: A0A661Z7I7_9BACT (Por_Secre_tail domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661Z7I7_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 8.230e-5
Identity = 42/162 (25.93%), Postives = 73/162 (45.06%), Query Frame = 1
Query:  301 DLTTGTGTTLNVTQNQIYSMRFWN---TGSSVYVLGTAFSSGDPYPNGAALNQFGEIQNFEPNKLDYYFRLAFNGASLSIDEIATQSVVAYPNPTSETLYFRGFTSE---MVTLYSITGK--QLFTKALENGSLDIQAFPSGMYFVAVPVGNRVAFSKVIKQ 762
            D T  T  TL +   + +S   WN   T  ++ V GT    G+ Y     +       N +         ++    S S++EI T+++  YPNPT    + +G  +E    +++Y+  GK  Q      EN  +++Q   SG+YF+ +   N   + K++KQ
Sbjct:  177 DTTITTNDTLILDAGEGFSSYLWNDNTTEQTLTVNGTDLGQGN-YDFSVEVEDVNTCSNSDT------INVSVESGS-SVNEIGTENISVYPNPTKSIFFIKGLNTENINQISIYNANGKIIQELKPNSENQEINLQHAASGIYFIRITNRNGTLYFKILKQ 330          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1470.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2D8LJW8_9FLAO2.190e-16997.17Por_Secre_tail domain-containing protein n=2 Tax=F... [more]
A0A7Y3BAY2_9FLAO1.050e-641.98T9SS type A sorting domain-containing protein n=1 ... [more]
A0A1I5CMX0_9FLAO1.060e-637.97Por secretion system C-terminal sorting domain-con... [more]
UPI000374CA9A1.100e-638.04T9SS type A sorting domain-containing protein n=1 ... [more]
M7MKX0_9FLAO3.100e-632.94Uncharacterized protein n=2 Tax=Xanthomarina gelat... [more]
A0A086AXP6_9FLAO4.120e-540.66Fibronectin type-III domain-containing protein n=7... [more]
A0A2A5HPR9_9FLAO5.380e-533.90CUB domain-containing protein n=1 Tax=Flavobacteri... [more]
A0A661Z7I7_9BACT8.230e-525.93Por_Secre_tail domain-containing protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1470contigP-littoralis_Contig1470:5280..6044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1123035.ARLA01000027_gene447
PFAMsTrypsin_2
Model size765
Max annot lvl976|Bacteroidetes
KEGG koko:K01337
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.8e-07
EggNOG OGsCOG0265@1|root,COG0265@2|Bacteria,4PKT1@976|Bacteroidetes,1I02G@117743|Flavobacteriia,4C2IF@83612|Psychroflexus
EC3.4.21.50
DescriptionTrypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Cds size765
COG categoryO
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789695.1906703-CDS-P-littoralis_Contig1470:5279..60441680789695.1906703-CDS-P-littoralis_Contig1470:5279..6044Pylaiella littoralis U1_48CDSP-littoralis_Contig1470 5280..6044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1470.3.1prot_P-littoralis_Contig1470.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1470 5280..6044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1470.3.1

>prot_P-littoralis_Contig1470.3.1 ID=prot_P-littoralis_Contig1470.3.1|Name=mRNA_P-littoralis_Contig1470.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=255bp
KSSNSSPFSFLIMVFTTTVHSQCIEEQLTITGNQGPNIGSSMGQQFMACE
TGTIDKVELNVFAGSNAVMKFELYDSSQGFINLMWTVDNIAINGPGPLLI
DLTTGTGTTLNVTQNQIYSMRFWNTGSSVYVLGTAFSSGDPYPNGAALNQ
FGEIQNFEPNKLDYYFRLAFNGASLSIDEIATQSVVAYPNPTSETLYFRG
FTSEMVTLYSITGKQLFTKALENGSLDIQAFPSGMYFVAVPVGNRVAFSK
VIKQ*
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mRNA from alignment at P-littoralis_Contig1470:5280..6044-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1470.3.1 ID=mRNA_P-littoralis_Contig1470.3.1|Name=mRNA_P-littoralis_Contig1470.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig1470:5280..6044- (Pylaiella littoralis U1_48)
AAAAGTAGCAACAGCTCCCCTTTTTCTTTTTTAATTATGGTGTTTACTAC AACAGTGCATTCACAGTGCATCGAAGAACAACTTACTATCACAGGTAATC AAGGACCCAATATTGGGTCAAGCATGGGGCAACAATTTATGGCTTGTGAA ACAGGCACGATCGATAAGGTTGAACTCAATGTGTTTGCTGGGTCAAATGC CGTTATGAAATTCGAGCTCTACGACAGCAGCCAAGGTTTTATTAATTTAA TGTGGACGGTAGATAATATTGCTATAAATGGTCCTGGCCCGCTGTTAATT GATCTCACTACAGGCACTGGAACAACTCTAAATGTAACACAAAACCAGAT CTACAGCATGCGTTTTTGGAATACAGGCTCTTCTGTATACGTTCTCGGTA CGGCTTTTTCTTCTGGCGACCCCTACCCCAATGGAGCTGCCTTGAACCAA TTTGGTGAAATACAAAATTTTGAACCGAATAAATTAGACTATTACTTCAG GCTTGCATTTAATGGTGCGTCACTTTCTATAGATGAAATAGCCACTCAAT CGGTGGTTGCGTACCCAAATCCGACCTCAGAAACTTTGTATTTCCGTGGC TTCACTTCGGAAATGGTCACGCTATATTCTATTACAGGAAAGCAACTATT CACAAAAGCACTGGAGAATGGCAGTCTAGATATTCAAGCATTCCCTAGCG GAATGTATTTTGTAGCTGTGCCCGTTGGAAATCGGGTGGCTTTCAGTAAA GTAATCAAGCAATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1470:5280..6044-

>mRNA_P-littoralis_Contig1470.3.1 ID=mRNA_P-littoralis_Contig1470.3.1|Name=mRNA_P-littoralis_Contig1470.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig1470:5280..6044- (Pylaiella littoralis U1_48)
AAAAGTAGCAACAGCTCCCCTTTTTCTTTTTTAATTATGGTGTTTACTAC
AACAGTGCATTCACAGTGCATCGAAGAACAACTTACTATCACAGGTAATC
AAGGACCCAATATTGGGTCAAGCATGGGGCAACAATTTATGGCTTGTGAA
ACAGGCACGATCGATAAGGTTGAACTCAATGTGTTTGCTGGGTCAAATGC
CGTTATGAAATTCGAGCTCTACGACAGCAGCCAAGGTTTTATTAATTTAA
TGTGGACGGTAGATAATATTGCTATAAATGGTCCTGGCCCGCTGTTAATT
GATCTCACTACAGGCACTGGAACAACTCTAAATGTAACACAAAACCAGAT
CTACAGCATGCGTTTTTGGAATACAGGCTCTTCTGTATACGTTCTCGGTA
CGGCTTTTTCTTCTGGCGACCCCTACCCCAATGGAGCTGCCTTGAACCAA
TTTGGTGAAATACAAAATTTTGAACCGAATAAATTAGACTATTACTTCAG
GCTTGCATTTAATGGTGCGTCACTTTCTATAGATGAAATAGCCACTCAAT
CGGTGGTTGCGTACCCAAATCCGACCTCAGAAACTTTGTATTTCCGTGGC
TTCACTTCGGAAATGGTCACGCTATATTCTATTACAGGAAAGCAACTATT
CACAAAAGCACTGGAGAATGGCAGTCTAGATATTCAAGCATTCCCTAGCG
GAATGTATTTTGTAGCTGTGCCCGTTGGAAATCGGGTGGCTTTCAGTAAA
GTAATCAAGCAATAA
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