mRNA_P-littoralis_Contig147.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig147.53.1
Unique NamemRNA_P-littoralis_Contig147.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig147.53.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 5.300e-130
Identity = 202/268 (75.37%), Postives = 228/268 (85.07%), Query Frame = 1 
Query:  529 LIGLDIEWEISAVGAPVNPPAMIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKRYAALDAYACLLLYDRITELSDPIFRDSDDLSLGDNVRFYTRGGNDCVGEECIVEYGEETWGTTGFFLVPRRTTRGHARRWTVRLDKVHVARAKALYPDADKPRGATATAQIGDRAGSVVSWDANRLRKT 1332
            L+ LDIEWEISA GAP NPPA IQLAAGK VVIFHVLHGQR+VP ELPD LV+LLED KLTKTGVGIKGDCT+L++ YGVEV+  VDLRSLAVERKVE+GLRRGLADLCVHLLG+ LPKD +VR+S+WN  +LS +QKRYAALDAYACLLL+ RI ELSD IFRD+++L +GD VR YTR GNDCVGE CIVE+ +ETWGTTGF+LVPRR TR  ARRW VRLD+VHV RAK LYPDA  PRG  ATAQ+  R  SV+ WDA+RLRKT
Sbjct:  253 LLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKRYAALDAYACLLLHGRIGELSDSIFRDAEELHVGDRVRLYTRAGNDCVGEGCIVEHTDETWGTTGFYLVPRRATRRFARRWAVRLDRVHVPRAKTLYPDATDPRGTPATAQLASRVDSVILWDASRLRKT 520
[Close]
BLAST of mRNA_P-littoralis_Contig147.53.1 vs. uniprot
Match: A0A6H5KFL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL9_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 6.900e-61
Identity = 112/227 (49.34%), Postives = 132/227 (58.15%), Query Frame = 3 
Query:    3 WRRAEQLGSGAEGGFGSFEDVDGYNGFFPSAHYLSTVWSKQMQQTNVAKLDKHVKGMHGE----------------------------------------------------------------VVLQKAIQSGSLREVKQDIKALFVTRYKGSGFKLPELLTTDECCQDKTLMEEVFRELEDEGHHFSVTNNAAVVSGFSVLTLPPDVTLGDPVKASKDSPCLKAA 491
            WRR EQL  G +  FGSFED DGYNGF PS HYLSTVW ++MQ++  A+LDKHV G+ GE                                                                VVLQKA+QSGSLRE+KQD+KALFVTRYKG GFKLP L++TDECC DK L+ ++F EL  EGH FSVTN+  + S   VL LPPDV LG+PVKA++DSPCLKAA
Sbjct:   34 WRREEQLDGGVQDEFGSFEDADGYNGFSPSEHYLSTVWCERMQRSRAARLDKHVNGVQGESKWTREDFLQRRQQQVDGTVLKVDASFKLAKLVRVRAPGAAADTKPFHCVVTLFNEFEQATQIVVVLQKALQSGSLRELKQDLKALFVTRYKGGGFKLPRLVSTDECCNDKALLNDIFEELASEGHQFSVTNSVPIASECPVLQLPPDVVLGEPVKANQDSPCLKAA 260
[Close]
BLAST of mRNA_P-littoralis_Contig147.53.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 7.550e-61
Identity = 110/177 (62.15%), Postives = 131/177 (74.01%), Query Frame = 1 
Query:  799 LAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKRYAALDAYACLLLYDRITELSDPIFRDSDDLSLGDNVRFYTRGGNDCVGEECIVEYGEETWGTTGFFLVPRRTTRGHARRWTVRLDKVHVARAKALYPDADKPRGATATAQIGDRAGSVVSWDANRLRK 1329
            +AVERKVE+  RRGLADLCV+LL + LPKD  VR+S+WN  +LS +QKR              RI ELSD IFRD++++ +GD+VR YTR GNDCVGE CIVE+ +ETWGTTG +LVPRR TRG ARRW V LD+VHV RAKALYPDA   RG  ATAQ+  R  SV+ WDA+RLRK
Sbjct:    1 MAVERKVELWFRRGLADLCVNLLEKQLPKDPIVRLSKWNKLDLSDDQKR--------------RIGELSDSIFRDAEEMHVGDSVRLYTRAGNDCVGEGCIVEHTDETWGTTGIYLVPRRATRGFARRWAVHLDRVHVPRAKALYPDATDRRGDPATAQLASRVDSVILWDASRLRK 163
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BLAST of mRNA_P-littoralis_Contig147.53.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.310e-29
Identity = 99/263 (37.64%), Postives = 130/263 (49.43%), Query Frame = 1 
Query:  493 GCRPNAS*GQQQLIGLDIEWEISAVGAPVNPPAMIQLAAGK-VVVIFHVLHGQRAV-PGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKRYAALDAYACLLLYDRITELSDPIF--RDSDDLSLGDNVRFYTRGGNDCVG-----EECIVEYGEETWGTTGFFLVPRRTTR-GHARRWTVRLDKVHVARAKALYPDADKP 1251
            GC+      Q  ++G+D EWE    G+       +QLA       +FH+  G R   P      L  LL D  +TK GV +KGD ++L   YGVE   +VDLRS A    V++  R  LA +    LG++L K+ SVR SRW+ AEL+Q Q  YA LDAYA ++L+  I +  DPIF    SD    G  VR YT     CVG     +E       E WGT    L  R  TR G  +R  V++  V V +  +L P  D P
Sbjct:   82 GCKQ-----QGHVLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCR-SLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQVNYACLDAYAAVVLHAEIGKSKDPIFCMAPSDIPIAGTEVRLYTNNHESCVGVGQVQDEEAARSLVEKWGTD-LKLAQREGTRSGGLKRVVVKV--VDVLKPASLTPHQDAP 335
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BLAST of mRNA_P-littoralis_Contig147.53.1 vs. uniprot
Match: A0A4D6NH10_VIGUN (Werner syndrome ATP-dependent helicase n=2 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6NH10_VIGUN)

HSP 1 Score: 110 bits (275), Expect = 1.830e-24
Identity = 61/146 (41.78%), Postives = 86/146 (58.90%), Query Frame = 1 
Query:  529 LIGLDIEWEISAVGAPVNPPAMIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKRYAALDAY 966
            L+GLD+EW  +      NP A +QL  G   +IFH+++ +      +P  LV  L+D  +T  GVGI+ D  KL   YG+ V  V DLRSLA ER+V   +  GL  LC+H+LG  + K  SV  S W+  +L+ EQ +YAA+DA+
Sbjct:   61 LVGLDVEWRPNTHPNRRNPIATLQLCVGHACLIFHIINSRF-----IPRSLVSFLQDPNVTFLGVGIRADADKLLEDYGLNVVNVCDLRSLA-ERRVPHLMHAGLKMLCLHVLGVEVEKPQSVTRSLWDNPQLTPEQVKYAAIDAF 200
[Close]
BLAST of mRNA_P-littoralis_Contig147.53.1 vs. uniprot
Match: A0A401SI95_CHIPU (DNA helicase n=2 Tax=Chiloscyllium TaxID=34767 RepID=A0A401SI95_CHIPU)

HSP 1 Score: 107 bits (268), Expect = 3.830e-21
Identity = 67/162 (41.36%), Postives = 92/162 (56.79%), Query Frame = 1 
Query:  520 QQQLIGLDIEWEISAVGAPVNPPAMIQLAAG-KVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKRYAALDAYACLLLYDRITEL 1002
            +Q  IG DIEW  + +   V   A+IQL A  K   +FH+     ++ G  P  L  LLED+ + K GVGI GD  KL   Y V++   V+L  +A  +K++   R  L  L  HL G+ L KD+SVR S W+   LS EQ+RYAA DAYA  L+Y+++  L
Sbjct:  116 KQSAIGFDIEWPPTYIKGKVGKVALIQLCASEKKCYLFHI----SSMSG-FPSGLKRLLEDEAIKKVGVGIDGDHWKLMRDYDVKLKGFVELTDMA-NQKLKCAERWSLNGLVQHLCGKQLWKDASVRCSDWDMFPLSDEQQRYAATDAYAGFLIYEKLNTL 271
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BLAST of mRNA_P-littoralis_Contig147.53.1 vs. uniprot
Match: UPI0011D1BD43 (Werner Syndrome-like exonuclease n=2 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D1BD43)

HSP 1 Score: 100 bits (250), Expect = 7.830e-21
Identity = 62/147 (42.18%), Postives = 81/147 (55.10%), Query Frame = 1 
Query:  529 LIGLDIEWEISAVGAPVNPPAMIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGL-RRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKRYAALDAY 966
            ++GLDIEW  +     V+P A++QL  G   +IF  LH +  VP  L   L  L    + T  GVGIK D TKL + YG+ VSR+VDLR+LA+ER         GL  L   LL R L K   + +SRW+   L+  Q  YA LDA+
Sbjct:   44 VVGLDIEWRPNLEPGVVHPVAILQLCVGHSCLIFQFLHAE-CVPASLHAFLANL----RYTFVGVGIKDDATKLRDDYGLAVSRMVDLRALAMERLRNPSFGHMGLKKLVKVLLRRELEKPKEITLSRWDDEALTARQVEYACLDAF 185
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BLAST of mRNA_P-littoralis_Contig147.53.1 vs. uniprot
Match: A0A6G1C5K1_9ORYZ (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1C5K1_9ORYZ)

HSP 1 Score: 99.8 bits (247), Expect = 1.310e-20
Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 1 
Query:  529 LIGLDIEWEISAVGAPVNPPAMIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRR-GLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKRYAALDAYA 969
            ++GLD+EW          P A++Q+  G++ +IF +LH        +PD+L + L DD+ T  GVGI  D  KL   YG+EV   +DLR+LA +   +  LR  GL  L   ++G    K   VR+S W++ +L+ +Q  YA  DA+A
Sbjct:   53 IVGLDVEWRPVIFFCVPGPVAVLQICVGRLCLIFQILHADY-----VPDQLGDFLADDRFTFVGVGIHDDVAKLKEHYGLEVENAMDLRNLAAQTLGKPALRSTGLQGLVWEVMGVWPEKPHHVRVSAWDSRQLTLDQVMYACADAFA 195
[Close]
BLAST of mRNA_P-littoralis_Contig147.53.1 vs. uniprot
Match: A0A8K0NE54_COCNU (Werner Syndrome-like exonuclease n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0NE54_COCNU)

HSP 1 Score: 97.4 bits (241), Expect = 8.600e-20
Identity = 55/147 (37.41%), Postives = 85/147 (57.82%), Query Frame = 1 
Query:  529 LIGLDIEWEISAVGAPVNPPAMIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGL-RRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKRYAALDAY 966
            ++GLD+EW  S      NP A++QL  G+  ++F +LH        +P+ L+  L DD+ T  GVGI GD  +LS+ + + +    DLR LA E+     L ++GLA L   +LG  + K   V +SRW+  +L+ EQ +YAA+DA+
Sbjct:   53 IVGLDLEWRPSNSRFQ-NPVAVLQLCVGRRCLVFLLLHADY-----VPNALLNFLADDRFTFVGVGIDGDVERLSDDHDISIGHTTDLRCLAAEKMNRPELNQKGLARLAEEVLGVEVRKPRHVTMSRWDRRDLTWEQIKYAAVDAF 193
[Close]
BLAST of mRNA_P-littoralis_Contig147.53.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 8.910e-20
Identity = 62/179 (34.64%), Postives = 94/179 (52.51%), Query Frame = 1 
Query:  490 RGCRPNAS*GQQQLIGLDIEWEISAVGAPVNPPAMIQLAAGKVVVIFHVLH---GQRAVPGELPDELVELLEDDKLTK-TGVGIKGDCTKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDSSVRISRWNTAELSQEQKRYAALDAYACLLLYDRITELSDPI 1014
            +GC+      Q  ++GLD EWE +  GA  NP + +QL+          LH    +      +P  L  LLE+    +  GV +  D + L   YGV+V+ ++D+R+ A E  VE    R LA +   L+G+ LPKD ++R+SRW+   L+ EQ   A LDAYA +L++  +    DPI
Sbjct:  146 KGCQD-----QGDVLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLENVPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETS-SRSLAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQVHIACLDAYASVLVHLEVERRKDPI 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig147.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE5.300e-13075.373'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KFL9_9PHAE6.900e-6149.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEU8_9PHAE7.550e-6162.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ6_9PHAE2.310e-2937.643'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A4D6NH10_VIGUN1.830e-2441.78Werner syndrome ATP-dependent helicase n=2 Tax=Vig... [more]
A0A401SI95_CHIPU3.830e-2141.36DNA helicase n=2 Tax=Chiloscyllium TaxID=34767 Rep... [more]
UPI0011D1BD437.830e-2142.18Werner Syndrome-like exonuclease n=2 Tax=Syzygium ... [more]
A0A6G1C5K1_9ORYZ1.310e-2036.493'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A8K0NE54_COCNU8.600e-2037.41Werner Syndrome-like exonuclease n=1 Tax=Cocos nuc... [more]
A0A6H5JCK3_9PHAE8.910e-2034.643'-5' exonuclease domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig147contigP-littoralis_Contig147:345149..347379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G0J2
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size1360
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons3
Evalue1.29e-27
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size768
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789694.6799004-UTR-P-littoralis_Contig147:345148..3453301680789694.6799004-UTR-P-littoralis_Contig147:345148..345330Pylaiella littoralis U1_48UTRP-littoralis_Contig147 345149..345330 +
1680789694.6936386-UTR-P-littoralis_Contig147:345939..3463481680789694.6936386-UTR-P-littoralis_Contig147:345939..346348Pylaiella littoralis U1_48UTRP-littoralis_Contig147 345940..346348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789694.7112026-CDS-P-littoralis_Contig147:346348..3467011680789694.7112026-CDS-P-littoralis_Contig147:346348..346701Pylaiella littoralis U1_48CDSP-littoralis_Contig147 346349..346701 +
1680789694.724517-CDS-P-littoralis_Contig147:346964..3473791680789694.724517-CDS-P-littoralis_Contig147:346964..347379Pylaiella littoralis U1_48CDSP-littoralis_Contig147 346965..347379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig147.53.1prot_P-littoralis_Contig147.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig147 346349..347379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig147.53.1

>prot_P-littoralis_Contig147.53.1 ID=prot_P-littoralis_Contig147.53.1|Name=mRNA_P-littoralis_Contig147.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp
MIQLAAGKVVVIFHVLHGQRAVPGELPDELVELLEDDKLTKTGVGIKGDC
TKLSNSYGVEVSRVVDLRSLAVERKVEVGLRRGLADLCVHLLGRTLPKDS
SVRISRWNTAELSQEQKRYAALDAYACLLLYDRITELSDPIFRDSDDLSL
GDNVRFYTRGGNDCVGEECIVEYGEETWGTTGFFLVPRRTTRGHARRWTV
RLDKVHVARAKALYPDADKPRGATATAQIGDRAGSVVSWDANRLRKTSTS
AAATTS
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mRNA from alignment at P-littoralis_Contig147:345149..347379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig147.53.1 ID=mRNA_P-littoralis_Contig147.53.1|Name=mRNA_P-littoralis_Contig147.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2231bp|location=Sequence derived from alignment at P-littoralis_Contig147:345149..347379+ (Pylaiella littoralis U1_48)
TGTGGCGCAGAGCAGAGCAGCTGGGTTCAGGGGCGGAGGGCGGGTTTGGG
TCCTTCGAGGATGTGGACGGATACAACGGCTTTTTCCCATCAGCGCATTA
TCTGTCTACGGTGTGGTCCAAGCAGATGCAGCAGACCAACGTGGCGAAGC
TCGACAAGCACGTGAAAGGAATGCATGGCGAGGTGCGTCGAGAGATACAT
GCAACGCTTGGGTGTAGCTGTAGGCTGATACCGACGTTGACCGCTTATCG
AATGTTGTTGTAGTAAAAGGTGGTTTGATATGTAGTTTTCTCTTCCATCT
TTGCCCGTAACAGGAAAAGTGGACACGGGAGACTTTCTTCAGAAGCGTCA
GCAGCTAGTTGATGGTAAATTGCTCTCTGTAGACCAGTCGTTCAACTTCG
CAAAGCTTGTACGGGTACGACTTGCTGGCCGTGGTTCGGACACCAAGCCT
TTCCACTCCGTGGTCACCTTTTTCAACGAGTTTGAACAGGCAAGTGCGGA
ATGTCAGATGATATGTTAGATTTTGATGATGATGGTAGCCCACCCTCAAG
AGCCCCCCCCCATAATGGTTCGGGGTTGTTGAAAATACGAGTTTGCCCCG
GCATGTTGTGGAACTCCCCCTCATCAGAGTTAGCGTATTGACGTGTGTCA
TGCATTTGTGGTTTTTAAAATGCATGATACGTACCCGCTTTGCTGCATCT
TGTAGTACACGTTTCGACGCAGATTCCGGTACCCCTCTCTGTTGTTTTGT
GTGTGCCCGTGTATGCGTTTATTGATATGACGCGCGTCCAGGTGGTGCTC
CAGAAAGCCATTCAGTCGGGCTCGTTGCGGGAAGTCAAGCAAGACATCAA
GGCGCTGTTCGTGACGCGGTACAAAGGTAGTGGGTTCAAGCTGCCTGAAC
TCCTCACCACGGACGAGTGCTGCCAAGACAAGACCCTTATGGAGGAGGTT
TTCCGAGAGCTGGAGGATGAGGGGCATCACTTCTCGGTCACGAACAATGC
GGCGGTCGTTTCGGGGTTCTCCGTTCTCACACTGCCGCCCGACGTTACTC
TTGGAGACCCTGTCAAGGCCAGCAAGGATTCACCGTGTCTGAAAGCGGCG
TGGATGCCGTCCGAACGCAAGCTGAGGCCAACAACAACTCATCGGCTTGG
ACATCGAGTGGGAGATATCCGCAGTCGGCGCACCGGTAAATCCACCCGCC
ATGATTCAACTGGCTGCAGGCAAGGTAGTGGTGATATTTCATGTCTTGCA
TGGTCAGCGTGCGGTGCCGGGCGAGCTGCCCGACGAGCTGGTGGAGTTAT
TGGAGGACGACAAACTGACAAAGACGGGGGTCGGGATAAAGGGAGACTGT
ACAAAGCTTTCTAACTCGTACGGTGTGGAAGTTTCTCGGGTTGTGGATCT
GCGCTCTCTGGCGGTGGAGCGAAAAGTAGAGGTGGGGCTCAGGCGGGGGC
TGGCCGACTTGTGTGTTCACCTTCTTGGGAGGACGTTGCCCAAGGACTCC
TCCGTTCGCATTTCTAGGTGGAACACGGCTGAGCTATCTCAGGAACAGAA
AAGGTGAGCGGCATTTGTGGTTTTTGTACCGTCCGCACCCTGTGTAATGA
GCGTCACAGACTCCCGTGTAGCATCTTGTTATATTTTTTCCACTTACCTC
ACTAGTTGAAAAGGTACAGCATCTACGCACCTACGTCTACCCGCATTCGA
ATGTGTACGTTTACGGTTGAGGTGCAGGACCCAAGCGCTGTTCCTTGTCT
TAACGGAGGTCTTGATTTTTTGTACTTCTTTTTGGTGCCTGCATTCTTGC
ATTCCTTGCGTTACAGGTACGCGGCGCTTGATGCGTATGCGTGTCTTCTG
CTCTATGATCGCATCACGGAGCTGTCGGACCCTATTTTCCGAGATAGTGA
TGACCTCAGCCTGGGAGACAATGTGCGTTTCTACACCCGCGGGGGGAATG
ACTGCGTAGGAGAGGAGTGCATTGTCGAGTACGGGGAGGAGACGTGGGGG
ACAACAGGCTTCTTCTTGGTGCCTCGTCGGACAACACGAGGCCACGCACG
ACGGTGGACTGTGCGCTTGGATAAGGTGCACGTGGCCCGTGCAAAAGCTT
TGTATCCAGACGCTGATAAACCCCGAGGAGCTACCGCAACGGCGCAGATT
GGGGATCGGGCGGGCAGCGTCGTGTCGTGGGACGCAAATCGTTTGCGGAA
GACTTCCACGTCAGCAGCAGCGACTACCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig147:345149..347379+

>mRNA_P-littoralis_Contig147.53.1 ID=mRNA_P-littoralis_Contig147.53.1|Name=mRNA_P-littoralis_Contig147.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig147:345149..347379+ (Pylaiella littoralis U1_48)
ATGATTCAACTGGCTGCAGGCAAGGTAGTGGTGATATTTCATGTCTTGCA
TGGTCAGCGTGCGGTGCCGGGCGAGCTGCCCGACGAGCTGGTGGAGTTAT
TGGAGGACGACAAACTGACAAAGACGGGGGTCGGGATAAAGGGAGACTGT
ACAAAGCTTTCTAACTCGTACGGTGTGGAAGTTTCTCGGGTTGTGGATCT
GCGCTCTCTGGCGGTGGAGCGAAAAGTAGAGGTGGGGCTCAGGCGGGGGC
TGGCCGACTTGTGTGTTCACCTTCTTGGGAGGACGTTGCCCAAGGACTCC
TCCGTTCGCATTTCTAGGTGGAACACGGCTGAGCTATCTCAGGAACAGAA
AAGGTACGCGGCGCTTGATGCGTATGCGTGTCTTCTGCTCTATGATCGCA
TCACGGAGCTGTCGGACCCTATTTTCCGAGATAGTGATGACCTCAGCCTG
GGAGACAATGTGCGTTTCTACACCCGCGGGGGGAATGACTGCGTAGGAGA
GGAGTGCATTGTCGAGTACGGGGAGGAGACGTGGGGGACAACAGGCTTCT
TCTTGGTGCCTCGTCGGACAACACGAGGCCACGCACGACGGTGGACTGTG
CGCTTGGATAAGGTGCACGTGGCCCGTGCAAAAGCTTTGTATCCAGACGC
TGATAAACCCCGAGGAGCTACCGCAACGGCGCAGATTGGGGATCGGGCGG
GCAGCGTCGTGTCGTGGGACGCAAATCGTTTGCGGAAGACTTCCACGTCA
GCAGCAGCGACTACCAGC
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