mRNA_P-littoralis_Contig147.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig147.49.1
Unique NamemRNA_P-littoralis_Contig147.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig147.49.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 9.340e-54
Identity = 100/146 (68.49%), Postives = 117/146 (80.14%), Query Frame = 1 
Query:  319 WQRYFITDQSWFDMRATIIGFVSMARYIFADKDLVEEVDGKATRFLYPRMFSQDILEMRFAHIRAGMGCHKAPTASPAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATQRVALPVNAEERGEVVRAATWRNAEHVFETRS 756
            W  +FITD SW DMR+ I+GFV+M+RYIFAD+DLVEE  G   RFLYPRMFSQDILE RFAHIR GMG HKAPTA+ AA+   HGDTCR+SHG +RRN+SRS G  F++Q  A+ RVALPVNA ER EVVRAATW   +HVFE+R+
Sbjct:  747 WAPHFITDVSWKDMRSCILGFVAMSRYIFADRDLVEEEGGVPRRFLYPRMFSQDILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGS-FEVQSSASIRVALPVNASEREEVVRAATWDRDDHVFESRA 891
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BLAST of mRNA_P-littoralis_Contig147.49.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 9.530e-44
Identity = 87/146 (59.59%), Postives = 100/146 (68.49%), Query Frame = 1 
Query:  319 WQRYFITDQSWFDMRATIIGFVSMARYIFADKDLVEEVDGKATRFLYPRMFSQDILEMRFAHIRAGMGCHKAPTASPAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATQRVALPVNAEERGEVVRAATWRNAEHVFETRS 756
            W  +FITD SW DMR TI+GFV+M RY+F D+DLV        RFLYPRMFSQDILE RFAHIR+G G HK PTA  A +A   GDT R+ HG RRRNSSRS G  F ++     R A P NA ER +VVRA T  +A HVFE+RS
Sbjct:  528 WANHFITDYSWTDMRTTILGFVAMCRYVFKDEDLVS-----GGRFLYPRMFSQDILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSAGMAFQLEDSQGVRAAFPANASERAQVVRAETRDDAHHVFESRS 668
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BLAST of mRNA_P-littoralis_Contig147.49.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 7.300e-28
Identity = 65/142 (45.77%), Postives = 89/142 (62.68%), Query Frame = 1 
Query:  310 KMGWQRYFITDQSWFDMRATIIGFVSMARYIFADKDL--VEEVDGKATRFLYPRMFSQDILEMRFAHIRAGMGCHKAPTASPAAQAGMHGDTCRLSHGERRRNSSR-----SGGQPFDIQQGATQRVALPVNAEERGEVVRA 714
            K+GW+++FIT QSWFD+R +I+GFVSM RY+F D +   ++ +     RFL PR  SQDI E RF+HIRA +G H+ PTA  A +    GD CR ++G+RRRN+SR     SGG   +      + + L V   E G+ VRA
Sbjct:  122 KLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRA 263
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BLAST of mRNA_P-littoralis_Contig147.49.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.010e-17
Identity = 60/146 (41.10%), Postives = 78/146 (53.42%), Query Frame = 1 
Query:  331 FITDQSWFDMRATIIGFVSMARYIFADKDLVEEVDGKATRFLYPRMFSQ--DILEMRFAHIRAGMGCHKAPTASPAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQ-GATQRVALPVNAEERGEVVRAATWRNAEHVFETRSV 759
            F+ DQ+W D+R TI+GFV+M RY+F D D V E  G   R+ + R ++Q  D  E RF HIRA  GCHK P    A  AG   D  R +   +RR+S R G   F +    A     LPVN ++R   +RA     A  V E RS+
Sbjct:  550 FLPDQTWDDLRLTILGFVAMTRYVFGDDDWVTE--GSRGRYKFMRDWNQASDTCEKRFGHIRANQGCHKNPRKESAFAAGHRADVVRKAQMSKRRDSDR-GKDAFKLDMVSAAAEATLPVNEQQRRYPMRAEGAGRAGFVREARSL 692
[Close]
BLAST of mRNA_P-littoralis_Contig147.49.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.400e-10
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:  223 MMNYNKFQGSSKGWRFSPNVLRWALYALAKMG 318
            MMNYNKFQGSSKGWRFSP VLRWALYALA MG
Sbjct:    1 MMNYNKFQGSSKGWRFSPKVLRWALYALANMG 32
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig147.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KFP1_9PHAE9.340e-5468.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE9.530e-4459.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE7.300e-2845.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE2.010e-1741.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQL9_9PHAE6.400e-1093.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig147contigP-littoralis_Contig147:337124..338634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size878
Hectar predicted targeting categoryother localisation
Exons3
Cds size540
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789694.4229732-UTR-P-littoralis_Contig147:337123..3372391680789694.4229732-UTR-P-littoralis_Contig147:337123..337239Pylaiella littoralis U1_48UTRP-littoralis_Contig147 337124..337239 -
1680789694.4492805-UTR-P-littoralis_Contig147:338035..3380381680789694.4492805-UTR-P-littoralis_Contig147:338035..338038Pylaiella littoralis U1_48UTRP-littoralis_Contig147 338036..338038 -
1680789694.4597926-UTR-P-littoralis_Contig147:338415..3386341680789694.4597926-UTR-P-littoralis_Contig147:338415..338634Pylaiella littoralis U1_48UTRP-littoralis_Contig147 338416..338634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789694.4324732-CDS-P-littoralis_Contig147:337239..3375241680789694.4324732-CDS-P-littoralis_Contig147:337239..337524Pylaiella littoralis U1_48CDSP-littoralis_Contig147 337240..337524 -
1680789694.440816-CDS-P-littoralis_Contig147:337780..3380351680789694.440816-CDS-P-littoralis_Contig147:337780..338035Pylaiella littoralis U1_48CDSP-littoralis_Contig147 337781..338035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig147.49.1prot_P-littoralis_Contig147.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig147 337240..338035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig147.49.1

>prot_P-littoralis_Contig147.49.1 ID=prot_P-littoralis_Contig147.49.1|Name=mRNA_P-littoralis_Contig147.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp
MMNYNKFQGSSKGWRFSPNVLRWALYALAKMGWQRYFITDQSWFDMRATI
IGFVSMARYIFADKDLVEEVDGKATRFLYPRMFSQDILEMRFAHIRAGMG
CHKAPTASPAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATQRVA
LPVNAEERGEVVRAATWRNAEHVFETRSV*
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mRNA from alignment at P-littoralis_Contig147:337124..338634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig147.49.1 ID=mRNA_P-littoralis_Contig147.49.1|Name=mRNA_P-littoralis_Contig147.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1511bp|location=Sequence derived from alignment at P-littoralis_Contig147:337124..338634- (Pylaiella littoralis U1_48)
GCGAAGCTCGAGGAGCAGGCCAAGGACAATCGAGCTCTACATGATAAGGT
AAAGCATCTCGAGGAGGAAGTGCGGAGGATTCGCAAGGAGGACATCCGGA
TAGCGGCAGACGCGGAAGGGGACCAGGATCGTCGGCTCCACGAGGCCTTG
TCGGGAGAGGAACCGAGGAAGCTGTTCGACAAGCTCCCGGAGGGCAGCCT
GGCGAGGGCGGTGGTGGACGTGAGTGTAGTATTTACGTCCTTGGTGTCGT
CGGTGTTACGAGTAATGTTTGAACCACACTGCTCCGGAATACCATAGCGC
GCGACCACACGACAGGCTAGTGTACCTTCGATAACGTACCAGCAAGGTCA
CGGCCGATGACCGCTGTGGATGCCACTCACAGCGCTAAGATCCTTTGGCA
CTATGCCCCCCTCCCCCTCCATGCCCAACTGGGACGCAATCAAGTGTTGT
CGTCTTGTCGCAGGGTCATCGTACAGATGAGGCTGCAATGCATATTTTAT
TCGCTCCGATGTTTGGTGTCCCTTCGCGTCGACGACTTTCCCGACACGTA
GGAAACAGTAGCACTGAGCCCTTTCTGACTCCACTTGTGTATGCAGGAGA
TGATGAACTACAACAAGTTCCAGGGGTCCTCGAAGGGATGGCGATTCAGT
CCGAATGTGCTTAGGTGGGCCTTGTACGCCTTGGCGAAGATGGGCTGGCA
GAGGTACTTCATCACCGACCAGTCGTGGTTTGATATGCGCGCCACCATTA
TTGGCTTCGTCTCGATGGCACGGTATATTTTTGCGGACAAGGATCTCGTC
GAGGAAGTAGACGGGAAGGCGACCCGCTTCCTATACCCACGCATGTTCAG
CCAGGTAACGAGCGTTTTTCCTGTTCTGTTTTTTCTTCGACGCAAGTACA
TGAACCGTTTGGCGGTGACCACCAGGGCGCACCCGTGCTGGTCAATAATC
TGCAAGTGAACTCGGGGCTTGTGTGTGCGTATTTGTAAAGTATATATTTT
TGTTGGCTGGCGCGACGCTATCGTCGTGTGGTGCTGGTGTCAATTAACTC
CTTTATGTCCGTACGTTCGACTCCCTCGACGCGCGTGACTGCCCCTTGCA
TCTCACCCAGGATATTCTCGAAATGAGGTTCGCGCACATAAGGGCTGGAA
TGGGGTGTCACAAGGCCCCTACGGCGTCTCCGGCGGCTCAAGCTGGAATG
CACGGAGATACTTGTCGGCTGTCCCACGGTGAACGGCGTCGCAATTCGTC
GAGATCGGGCGGGCAGCCGTTCGACATCCAACAGGGAGCAACTCAGCGAG
TGGCATTACCTGTTAACGCGGAAGAGCGAGGAGAAGTAGTGAGAGCCGCC
ACGTGGCGCAATGCAGAGCATGTGTTTGAGACGCGCTCGGTGTGAAGTAC
TGCTGTGTGTCGTGTGCTCTGTAACGCCAAAGTAGGAGCTTTCGCTTTGT
GGTTCGGTTTGAACTCTGTTGTGTGTGTACGATGAGTTCCGAATAGTTTC
CCTTGTGTTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig147:337124..338634-

>mRNA_P-littoralis_Contig147.49.1 ID=mRNA_P-littoralis_Contig147.49.1|Name=mRNA_P-littoralis_Contig147.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig147:337124..338634- (Pylaiella littoralis U1_48)
ATGATGAACTACAACAAGTTCCAGGGGTCCTCGAAGGGATGGCGATTCAG
TCCGAATGTGCTTAGGTGGGCCTTGTACGCCTTGGCGAAGATGGGCTGGC
AGAGGTACTTCATCACCGACCAGTCGTGGTTTGATATGCGCGCCACCATT
ATTGGCTTCGTCTCGATGGCACGGTATATTTTTGCGGACAAGGATCTCGT
CGAGGAAGTAGACGGGAAGGCGACCCGCTTCCTATACCCACGCATGTTCA
GCCAGGATATTCTCGAAATGAGGTTCGCGCACATAAGGGCTGGAATGGGG
TGTCACAAGGCCCCTACGGCGTCTCCGGCGGCTCAAGCTGGAATGCACGG
AGATACTTGTCGGCTGTCCCACGGTGAACGGCGTCGCAATTCGTCGAGAT
CGGGCGGGCAGCCGTTCGACATCCAACAGGGAGCAACTCAGCGAGTGGCA
TTACCTGTTAACGCGGAAGAGCGAGGAGAAGTAGTGAGAGCCGCCACGTG
GCGCAATGCAGAGCATGTGTTTGAGACGCGCTCGGTGTGA
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