mRNA_P-littoralis_Contig147.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig147.40.1
Unique NamemRNA_P-littoralis_Contig147.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A6H5KX44_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX44_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 1.060e-109
Identity = 150/202 (74.26%), Postives = 177/202 (87.62%), Query Frame = 3
Query:   60 SRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQA---AEQEQ 656
            SRGWT GE++LR+PLDNWDGY EMLRQ+PV VKACTSGIVYA+GD VAQ++EGTEL++I R+RV+RSA+AGLLLHGPLSHVWY VCEGLFD VGWN+YWWV  PKI+TDQL+WGP WNA+YI+   +L +DS   I  A+ STA+PL++AG+RLWPLAH+VTYGL+P ENRLLWVDAVEIVWVTILS QAAEQA   AEQE+
Sbjct:  140 SRGWTIGEYILRVPLDNWDGYSEMLRQSPVQVKACTSGIVYALGDLVAQSMEGTELAEIERQRVVRSAMAGLLLHGPLSHVWYNVCEGLFDIVGWNEYWWVPAPKIITDQLLWGPAWNAVYIAFLGVLNKDSSAVIWEAITSTALPLVIAGIRLWPLAHVVTYGLVPKENRLLWVDAVEIVWVTILSSQAAEQARSPAEQEE 341          
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A836C8Z2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z2_9STRA)

HSP 1 Score: 288 bits (736), Expect = 5.720e-94
Identity = 131/203 (64.53%), Postives = 158/203 (77.83%), Query Frame = 3
Query:   45 STQDDSRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAEQE 653
            ST D SRGWT  E LLRLP DNW GY++MLR +PVLVKA TSG VYA+GDW AQT  GT L+++ R RV RSA AG + HGPLSH WY VCE LF A+GWN  WWV +PKI+TDQL+WGP+WNA Y+ +  +++RD+   +  AV ST VPL+V+GL+LWP  HLVTYGLIP ENRLLWVD VEI+WVTILSKQAA++A   +
Sbjct:   82 STLDASRGWTAEEVLLRLPQDNWQGYMDMLRSHPVLVKAVTSGTVYALGDWTAQTTNGTPLAELDRWRVARSAAAGFVGHGPLSHCWYEVCEALFSAIGWNGAWWVTLPKIMTDQLVWGPIWNATYVVLVGLMKRDAPARVWEAVTSTMVPLVVSGLKLWPAVHLVTYGLIPPENRLLWVDTVEILWVTILSKQAADEAKRDQ 284          
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A7S1VV68_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV68_9STRA)

HSP 1 Score: 238 bits (607), Expect = 4.450e-74
Identity = 113/200 (56.50%), Postives = 140/200 (70.00%), Query Frame = 3
Query:   51 QDDSRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAEQ 650
            QD  RGWT  E L R+ LDNW  Y E+L   P+  KA TS  VYA+GD +AQ  EG  + ++ R R LRS LAGL+ HGPLSHVWY V E LF A+ WN+ WW   PK++ DQL WGP WN +YI +  I++ +S++T+   +  T VPLIV+GL+LWPLAH VTYGLIP ENRLLWVD VEI WVTIL+ QA+   AE+
Sbjct:  131 QDMMRGWTAAESLTRISLDNWADYSEILNAAPLQTKAITSATVYAIGDIIAQRTEGVSMGELDRPRTLRSLLAGLIGHGPLSHVWYDVSEELFTALHWNE-WWGFFPKVMVDQLTWGPFWNNMYIVLLGIMKMESWETMWGDIKRTTVPLIVSGLKLWPLAHCVTYGLIPVENRLLWVDVVEIAWVTILASQASGAGAEE 329          
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: W7TQH1_9STRA (Peroxisomal membrane 22 kDa (Mpv17 pmp22) family protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQH1_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.240e-72
Identity = 111/198 (56.06%), Postives = 137/198 (69.19%), Query Frame = 3
Query:   63 RGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAEQEQ 656
            RGWT  E   R+PLDNWDGY+ +L  +PV VKA TSG VY +GD VAQ  EG  L +I R RV RS +AG + HGPLSH WYGV E  F  +GW   WW   PKI  DQL+W P+WN  YI +   ++R++   I   V ST+  LI +GL+LWPLAH+VTYG+IP ENRLLWVD VEI+WVTILS++AA   AE+ +
Sbjct:  152 RGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEG-WWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAE 348          
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: B7G9T7_PHATC (Predicted protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9T7_PHATC)

HSP 1 Score: 229 bits (585), Expect = 2.190e-72
Identity = 104/196 (53.06%), Postives = 137/196 (69.90%), Query Frame = 3
Query:   60 SRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAE 647
            SRGWT+ E   R+P+D W GY ++L  +PV  KA TS  VY +GD++AQ  +G  + D+ R R++RS LAGL+ HGPLSH WY VC+  FD V     WW   PK+V DQ  WGP+WN  YI +  +++ +  +TI + +  T VPLI++GL+LWPLAH VTYGL+P ENRLLWVDAVEI+WVTIL+  AAE  A+
Sbjct:   26 SRGWTSEELAARIPMDVWAGYSQVLENSPVATKAATSATVYTIGDFIAQRTQGAAMGDLDRGRIVRSMLAGLIGHGPLSHFWYNVCDHFFDNVLHWTAWWSFFPKVVVDQTTWGPIWNNTYILLLGLMKLEKLETIWSDMKRTTVPLILSGLKLWPLAHCVTYGLVPVENRLLWVDAVEILWVTILATTAAEAHAD 221          
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A6V2I5L6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2I5L6_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.730e-66
Identity = 100/191 (52.36%), Postives = 128/191 (67.02%), Query Frame = 3
Query:   60 SRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAA 632
            +RGWT  E   R+P+DNW GY   L  +P+  KA TS  VY +GD +AQ  EG  + ++ R R++RS LAGL+ HGP+SH WY   E  FD V     WW   PK+  DQ  WGPLWN  YI +  +++ DS++ I   +  T +PLIV+GL+LWPLAH VTYGLIP ENRLLWVD VEI+WVTIL+ QA+
Sbjct:  125 TRGWTPEEIATRIPIDNWIGYSSTLHNSPISTKAITSASVYTIGDVIAQKTEGAGMGELDRPRIIRSLLAGLIGHGPMSHFWYEYSEDFFDNVLHLTEWWSFFPKVAIDQATWGPLWNNTYILLLGLMKLDSWERIWGDMKRTTIPLIVSGLKLWPLAHCVTYGLIPVENRLLWVDLVEIIWVTILANQAS 315          
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A7S2LHE2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHE2_9STRA)

HSP 1 Score: 218 bits (555), Expect = 2.060e-66
Identity = 101/198 (51.01%), Postives = 132/198 (66.67%), Query Frame = 3
Query:   63 RGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAV-GWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAEQE 653
            RGW+T E   R+PLDNW+ Y  +L   P+  K+ TS  VYA+GD +AQ  EGTE+ ++ R R+ RS  AGL+ HGPLSH WY + E  F+ V  W D WW  +PK+V DQ +WGP WN  YI +  +++      + A +  T +PL+V+GL+LWPLAH +TYGL+P ENRLLWVD VEIVWVTIL+ QAA      E
Sbjct:  132 RGWSTEEIAYRVPLDNWNSYNAILAAAPIQTKSITSATVYAIGDTIAQRTEGTEIGELDRGRIGRSLAAGLIGHGPLSHFWYQISEDFFNNVLMWTD-WWSFIPKVVIDQTLWGPFWNNSYIVLLGVMQFQKPSQVWADIKRTTIPLVVSGLKLWPLAHCITYGLVPVENRLLWVDMVEIVWVTILATQAAGSVESNE 328          
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A7S2HYH1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYH1_9STRA)

HSP 1 Score: 218 bits (554), Expect = 3.270e-66
Identity = 100/192 (52.08%), Postives = 127/192 (66.15%), Query Frame = 3
Query:   60 SRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAV-GWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAA 632
            +RGWT  E   R+P+DNW  Y  +L   P+  KA TS  VY +GD +AQ  EG  + D+ R R+LRS LAGL+ HGPLSH WY   E  FD V  W + WW   PK++ DQ  WGP WN  YI +   ++ D ++ I   +  T +PL+V+GL+LWPLAH VTYGL+P ENRLLWVD VEIVWVTIL+ QA+
Sbjct:  126 TRGWTPEEVAARIPMDNWSSYSAVLEDAPISTKAITSASVYTIGDVIAQRTEGNSMGDLDRPRILRSLLAGLIGHGPLSHFWYDYSEAFFDDVLKWTE-WWSFFPKVILDQTTWGPFWNNTYIILLGAMKLDKWENIWGDIKRTTIPLVVSGLKLWPLAHCVTYGLVPVENRLLWVDLVEIVWVTILATQAS 316          
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A7S2KHW9_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KHW9_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.010e-64
Identity = 99/198 (50.00%), Postives = 131/198 (66.16%), Query Frame = 3
Query:   60 SRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAEQE 653
            +RGWT  E  LR+PLDNW  Y  +L   P+  KA TS  VY +GD +AQ  EG ++  + R R+LRSALAGL+ HGP+SHVWY V E  FD +     WW  VPKIV DQL++GP+WN  YI +  I++      I   +  + +PL+++GL+LWP  H +TYGLIP ENRLLWVD VEI+WVTIL+ +A    +E +
Sbjct:  147 TRGWTAEEIALRIPLDNWRSYTNILSMAPIETKAVTSATVYTIGDIIAQKTEGLDIGKLDRGRILRSALAGLIGHGPMSHVWYHVSEDFFDNILHLHAWWDFVPKIVVDQLVFGPIWNNSYILLLGIMQLQKPGQIFGDMKRSTIPLLISGLKLWPFVHCITYGLIPVENRLLWVDLVEILWVTILANEANANNSEAQ 344          
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A7S2PLY5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PLY5_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.810e-64
Identity = 102/195 (52.31%), Postives = 126/195 (64.62%), Query Frame = 3
Query:   63 RGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLF-DAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAA 644
            RGWT  E  +R+P+DNW  Y  +L   P+  KA TS  VY +GD +AQ  EG    D+ R RVLRS LAG + HGPLSHVWY   E +F +   W + WW   PK+  DQ+ WGP WN  YI +  I++      I   +  T VPLIV+GL+LWPLAH VTYGL+P ENRLLWVD VEIVWVTIL+  AAE ++
Sbjct:  116 RGWTAAEMAVRIPVDNWASYESILHAAPISTKAVTSATVYTIGDIIAQRTEGKSYGDLDRWRVLRSLLAGCIGHGPLSHVWYDWSEDVFTEQFHWTE-WWSFFPKVAIDQMTWGPFWNNTYILLLGIMQFRPLKDIWTEIKETTVPLIVSGLKLWPLAHCVTYGLVPVENRLLWVDLVEIVWVTILASAAAEASS 309          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX44_9PHAE1.060e-10974.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8Z2_9STRA5.720e-9464.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1VV68_9STRA4.450e-7456.50Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
W7TQH1_9STRA1.240e-7256.06Peroxisomal membrane 22 kDa (Mpv17 pmp22) family p... [more]
B7G9T7_PHATC2.190e-7253.06Predicted protein (Fragment) n=3 Tax=Phaeodactylum... [more]
A0A6V2I5L6_9STRA1.730e-6652.36Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2LHE2_9STRA2.060e-6651.01Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2HYH1_9STRA3.270e-6652.08Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2KHW9_9STRA1.010e-6450.00Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A7S2PLY5_9STRA1.810e-6452.31Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig147contigP-littoralis_Contig147:248450..251230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2C4
PFAMsMpv17_PMP22
Model size763
Max annot lvl2759|Eukaryota
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005779,GO:0016020,GO:0016021,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Exons3
Evalue6.85e-95
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-16_001670.1
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
Cds size531
COG categoryC
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789694.2328439-UTR-P-littoralis_Contig147:248449..2485531680789694.2328439-UTR-P-littoralis_Contig147:248449..248553Pylaiella littoralis U1_48UTRP-littoralis_Contig147 248450..248553 -
1680789694.2793763-UTR-P-littoralis_Contig147:251102..2512301680789694.2793763-UTR-P-littoralis_Contig147:251102..251230Pylaiella littoralis U1_48UTRP-littoralis_Contig147 251103..251230 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789694.2437084-CDS-P-littoralis_Contig147:248553..2486591680789694.2437084-CDS-P-littoralis_Contig147:248553..248659Pylaiella littoralis U1_48CDSP-littoralis_Contig147 248554..248659 -
1680789694.2579942-CDS-P-littoralis_Contig147:250288..2504861680789694.2579942-CDS-P-littoralis_Contig147:250288..250486Pylaiella littoralis U1_48CDSP-littoralis_Contig147 250289..250486 -
1680789694.2697687-CDS-P-littoralis_Contig147:250875..2511021680789694.2697687-CDS-P-littoralis_Contig147:250875..251102Pylaiella littoralis U1_48CDSP-littoralis_Contig147 250876..251102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig147.40.1prot_P-littoralis_Contig147.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig147 248554..251102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig147.40.1

>prot_P-littoralis_Contig147.40.1 ID=prot_P-littoralis_Contig147.40.1|Name=mRNA_P-littoralis_Contig147.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLL
LHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYIS
VTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLL
WVDAVEIVWVTILSKQAAEQAAEQEQ*
back to top

mRNA from alignment at P-littoralis_Contig147:248450..251230-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig147.40.1 ID=mRNA_P-littoralis_Contig147.40.1|Name=mRNA_P-littoralis_Contig147.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2781bp|location=Sequence derived from alignment at P-littoralis_Contig147:248450..251230- (Pylaiella littoralis U1_48)
GGAAAAACAAACGAAGCTTGGTAAGCACAATACCTACATGATATTCAACG CAGGACGATTCCCGGGGGTGGACCACGGGCGAGTTCTTGCTGCGACTGCC GCTGGACAACTGGGACGGCTACATCGAGATGCTGCGGCAAAATCCCGTTC TGGTGAAGGCCTGCACCAGCGGGATCGTTTACGCCGTTGGGGACTGGGTG GCGCAGACGATCGAGGGTACCGAGCTTTCGGACATCAGGAGGAGACGGGT GCTCAGATCGGCGCTGGCGGGGCTGCTGCTGCACGGTCCCCTGAGCCACG TCTGGTACGGCGTGTGCGAGGGGCTGTTCGACGCTGTTGGATGGAACGAT TACTGGTACGTGGGTGCTGTTATTATTGCAGTTTTTGTGCGTGAGAGAAT GAGGTATGTGGGGGGGGGCGAAGGGTTGTGCGATGTTTTTGTTCCGCACG AAGACAGCAAAAATCTTTCGAGTAGAAACAAGCGACACACACATCCGGGT TGTTTGCTGGTTGGTTGTCCCTCGTTCCCGTTCCCACAAATGAACACCCG GAACGATGACATAAAAAGAAAAGATTCCAAAAATGGACTTGCCTGACTGG GTTTTTCTTTTCACGAAGGCCTTCTCTCCCCCTACGTTTATATGACGAAG TATAACATAAATATGAGACAGATAACGCTGAGTAGCACACCCCGACTGAG CGCAGATCGGAAACTTTCGTTGGTGATTCTATGTGCATGTGCAGGTGGGT AGCCGTACCCAAAATCGTCACCGACCAGCTTATCTGGGGGCCGCTGTGGA ACGCCATATACATTTCGGTGACCAGCATCCTTGAGAGGGACTCGTTCGAC ACCATCAAGGCCGCGGTGATATCGACGGCCGTGCCGCTCATCGTAGCGGG CCTCCGGCTCTGGCCACTGGCGCACCTTGTCACCTACGGCCTGTGAGTGA AGACAGAACGAACTGCTCGAGTAATCGTGTATGATTTTGGCGGCCTTCCT CTTTTTCTTCCCGCAAGTTGTTAGTTTTCAAGAGTGCTCACTACTGCTGC CAGACGGCAACTTGAAACTTCGTATGCAGAGCTACTGTGGGAAATTCTTG ATATCGCGCTCAGGTGTTGGCGTTGGAGCAAAAGTGCAATGTTTGTTCTG CGCTTCAGTGCTATTTTTTGTGAAGGCGGTCCAGGTGGCCGGCGGGAAGG GAAGGGGGGGGGGGCAGAGATGAGCTACGGGGGAGTCTAACAGAGCCGCC AAGTTATTGGGGACCGGCTGTTGGCTCCTTGGGACGGGGAACGAAAGTCC CCCCGCGTTTCATCGCCGAAGAGGTGGTGCTTTTACGTTGGATAAACACA AACAAATAAACAAACAATCAAACAAATATAAAAGCTTCACGTACCGCGAC ATCAGACAGCAACAGAGCTTGATGAAGACCTCCCAAGTCCTGATGATTTT CTAAATGGAGGTCTACATGGTGGCGGCCCTCGGCGCCGCTGCCGCTACGT ACGCGGCTGTCACAGTTCGTGTGGTGCTGAAAAAGGGAAGGGTTACGAGA AAGCGAGTGTGTTGGTGAGGCGAATCCAAAATCGCGGCCCAGGCTGTGCT TTGTTTTTTTTGTCGGAATCACAAACTACAACTTAACGAGCATCAGACAG TAACAAACTTGAAGGTCTGCAAATCATGCAGCCACAGAACTTGAGCGAAG GTCTGCGAAGTCGCGATCCTTTCGAACCGGAGGTCTAATGATTCTGGCCC TCGAGGTCGTTGCCATCACGCGGCTGTTATAGCGCGTGTGCTGGCTGCAA TAGGGTGTGTTTTGGTGAGACAGACAGAGAAAAGGGCAGCTAGGCCGCAA AACAAATATTGAGGTTCCTTCTCTTCGCTCCTCATCGACAATCTCTTGAG ACGCCTGCTGGAATATTCAATATTTGGATCAGGAGTGGATTCGCTCGCCA GCCAGTGTGTTGTTCTCGGGTGTGCTACTCATTTTTTGTGCTCTTTCCGC TGTTGGTTGCAGCCGCTCGGGCGGCTTTGGGTGTGTTGGTAAAACAATCT CTTACAGTACAGGGGGACGGAACTTCGTGTGTTTTTTCGCCTCGTTCATT TCCCTCGAACGGACGAACTGGGGAAAGAACGACTCGATATTTTCGTCGCT TTCATTGTTGGGGGGGGGGGGGGGGCTGTTCCAATGAAGTTGGCGTCATA ATCAGACTTCCCACACAAGATGTTTTTGCGGGGGCGTTTTCCATGGCGAT ATGGGACTGTGCGGGCTAGTCCTACGCGTCCGGAAATCCGTGCTATTCTG CGTTCCGTGATTATGTGTTCCGTGCTTGTTTCACGACGTTGGGGACGGCC TCCGATAGGCTGCAGCTCCCTCCCACCATTGCATCTCTCTGGTTTACCCC AAACCAAGAGCATTGTTCAACTCACCCCCTGGCGTGCCTCTGTTACACTA AGTAAGATGGAACGCCCTCTCAAACACTCATTTCCCTCCCCCCCTTTTGC TCCCCTCCCGCCGCCGCAACCAACACTGCCCTTGCTTTTATGCTGTCTCT CCGTCCTTCTTCCTGCCGTAGAATACCAACCGAAAACCGCCTCCTGTGGG TTGACGCTGTAGAGATCGTTTGGGTGACGATTCTAAGCAAACAGGCGGCG GAGCAAGCGGCAGAGCAGGAGCAGTAGAAGGAACGTTAACGGGCAGGTTA ATGCGGGGCGTAGACAGAATGAACCGTTTTTTATTGACACCTAAAGACAA GGCGTTATTAGTTTGGGGTCATATATACAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig147:248450..251230-

>mRNA_P-littoralis_Contig147.40.1 ID=mRNA_P-littoralis_Contig147.40.1|Name=mRNA_P-littoralis_Contig147.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig147:248450..251230- (Pylaiella littoralis U1_48)
ATGCTGCGGCAAAATCCCGTTCTGGTGAAGGCCTGCACCAGCGGGATCGT
TTACGCCGTTGGGGACTGGGTGGCGCAGACGATCGAGGGTACCGAGCTTT
CGGACATCAGGAGGAGACGGGTGCTCAGATCGGCGCTGGCGGGGCTGCTG
CTGCACGGTCCCCTGAGCCACGTCTGGTACGGCGTGTGCGAGGGGCTGTT
CGACGCTGTTGGATGGAACGATTACTGGTGGGTAGCCGTACCCAAAATCG
TCACCGACCAGCTTATCTGGGGGCCGCTGTGGAACGCCATATACATTTCG
GTGACCAGCATCCTTGAGAGGGACTCGTTCGACACCATCAAGGCCGCGGT
GATATCGACGGCCGTGCCGCTCATCGTAGCGGGCCTCCGGCTCTGGCCAC
TGGCGCACCTTGTCACCTACGGCCTAATACCAACCGAAAACCGCCTCCTG
TGGGTTGACGCTGTAGAGATCGTTTGGGTGACGATTCTAAGCAAACAGGC
GGCGGAGCAAGCGGCAGAGCAGGAGCAGTAG
back to top