mRNA_P-littoralis_Contig147.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig147.24.1
Unique NamemRNA_P-littoralis_Contig147.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig147.24.1 vs. uniprot
Match: A0A6H5K8X9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X9_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 2.000e-39
Identity = 172/465 (36.99%), Postives = 207/465 (44.52%), Query Frame = 2
Query:  113 MKRSRTCLNLVELDTTTASPKRTCSLPNLASSGSXXXXXXXXXXXXXLRQNRQDTLPFFHQYTAPSMCQGPPTGYQQPXXXXXXXXVVRAEVAFVVESIVRSQGSLSEITIHEGQQFIGEEVAAGAGGAEAAAAEPQSSRAG-----------HHGGVSVSLFGGAVRGSLFEDEY-SSDYFCGVASSDEAEDDSXXXXXXXXXXXXXXXEAMARDFNVNGSVCCVRQISDADSTTSCXXXXXXASSSSSGGGGGTGVGC---TFEGETDDYV--SGTDFVGCAQGSAASTDVAAAAAAPKSWGECSFGGGDYSAGGGSSGNGPGGVPISSGPHAGGSWRSPTGGGPRVTVRICSPPDDSNSNSRLRRTVPPPWPMSAVPHSSMMNTW--------------------QHHGHLHR----RGRGGSDEED-GSLVFANRFAPSDDAKVLVEMARLRLVDAETASA 1381
            MKRSRTCLNL ELDT  A+PKRTCSLP+   S S             +RQN Q+ L F  Q+ A ++ QG                   A+ AFVVESIVRSQ SL+EITIHEGQQFIG+E        EAA A PQ                      +SLFGGAV GSLFED   SSDYFCGV SSDEA++DS                  +                        XX    + SS+SG G   G G     FEG+ D  +  +   FV     +AA    +  AA                         P  +  ++GPHAGGSW+    G PRV+VRI        ++     TVPPPWP + +P S++MN W                    Q  G   R     GR GS EED GSLV A     SDDAK+L+ M RLRLVD    +A
Sbjct:    1 MKRSRTCLNLFELDTP-AAPKRTCSLPSNLGSFSSSSISSSSSFSLSVRQN-QERLLFLQQHAASTLAQGTAAA-----------PATIADGAFVVESIVRSQRSLNEITIHEGQQFIGQE------SNEAATAVPQQQSLAAXXXXXXXXXXXXXXXPLSLFGGAVIGSLFEDGGDSSDYFCGVDSSDEADEDSTVIAASAAAECAISTTCDSXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSSCSSASGSGAIGGFGAERYAFEGDDDSIIGIAADPFVDLDTAAAAGLSFSLPAAHXXXXXXXXXXXXXXP---------PQPLVAATGPHAGGSWQPAAAGAPRVSVRISGGXXXXGTSRERSMTVPPPWPATMLPTSALMNGWSAGPIAGAGHSGDGGNSWRRQRQGGRRRCRGDSGRDGSGEEDDGSLVSA-AVGLSDDAKMLIGMNRLRLVDLAPENA 436          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig147.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8X9_9PHAE2.000e-3936.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig147contigP-littoralis_Contig147:154696..165980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size4541
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_007150.1
Cds size1272
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789693.2986426-UTR-P-littoralis_Contig147:154695..1548071680789693.2986426-UTR-P-littoralis_Contig147:154695..154807Pylaiella littoralis U1_48UTRP-littoralis_Contig147 154696..154807 +
1680789693.3377552-UTR-P-littoralis_Contig147:162823..1659801680789693.3377552-UTR-P-littoralis_Contig147:162823..165980Pylaiella littoralis U1_48UTRP-littoralis_Contig147 162824..165980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789693.3087013-CDS-P-littoralis_Contig147:154807..1550151680789693.3087013-CDS-P-littoralis_Contig147:154807..155015Pylaiella littoralis U1_48CDSP-littoralis_Contig147 154808..155015 +
1680789693.3187044-CDS-P-littoralis_Contig147:155635..1559431680789693.3187044-CDS-P-littoralis_Contig147:155635..155943Pylaiella littoralis U1_48CDSP-littoralis_Contig147 155636..155943 +
1680789693.3281772-CDS-P-littoralis_Contig147:162067..1628231680789693.3281772-CDS-P-littoralis_Contig147:162067..162823Pylaiella littoralis U1_48CDSP-littoralis_Contig147 162068..162823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig147.24.1prot_P-littoralis_Contig147.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig147 154808..162823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig147.24.1

>prot_P-littoralis_Contig147.24.1 ID=prot_P-littoralis_Contig147.24.1|Name=mRNA_P-littoralis_Contig147.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=424bp
MKRSRTCLNLVELDTTTASPKRTCSLPNLASSGSSSSFYINNTTAAALRQ
NRQDTLPFFHQYTAPSMCQGPPTGYQQPTTTTTTTTVVRAEVAFVVESIV
RSQGSLSEITIHEGQQFIGEEVAAGAGGAEAAAAEPQSSRAGHHGGVSVS
LFGGAVRGSLFEDEYSSDYFCGVASSDEAEDDSNSDSVAATATATTTAEA
MARDFNVNGSVCCVRQISDADSTTSCARQVSDASSSSSGGGGGTGVGCTF
EGETDDYVSGTDFVGCAQGSAASTDVAAAAAAPKSWGECSFGGGDYSAGG
GSSGNGPGGVPISSGPHAGGSWRSPTGGGPRVTVRICSPPDDSNSNSRLR
RTVPPPWPMSAVPHSSMMNTWQHHGHLHRRGRGGSDEEDGSLVFANRFAP
SDDAKVLVEMARLRLVDAETASA*
back to top

mRNA from alignment at P-littoralis_Contig147:154696..165980+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig147.24.1 ID=mRNA_P-littoralis_Contig147.24.1|Name=mRNA_P-littoralis_Contig147.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11285bp|location=Sequence derived from alignment at P-littoralis_Contig147:154696..165980+ (Pylaiella littoralis U1_48)
TTTTTTAGTTGAAGATGATATTTTGTGGCGTTCCGGTAGCTTCGGTAGCT TGTGCCCCGAGCATCATCAAAAGCAAACCTCCTCCTTCCTGAAGTCTGAG TGCCGGCCCAAAATGAAGAGGAGTAGAACATGCTTGAACTTAGTGGAGCT AGATACCACGACGGCTTCTCCCAAGAGGACTTGTTCCCTTCCAAACTTGG CTTCGAGTGGCAGCAGCAGCAGTTTCTACATCAATAATACCACGGCTGCG GCTCTGAGGCAGAACCGTCAGGACACGTTGCCGTTTTTCCACCAATACAC AGCACCGTCAATGTGTCAAGGTGCGGGGGGGATTCGAATGCTCTTCCGGT GCCTTTGCTCTGCGCAACAACGCTGTCGGCGTAGCTGCGCTCGGCTTTTG TGTTTGCTCCGGCAGTCTTGGATGGCTTGCACCTGGGGTTGGCAGCACAG ATGTAAATGTTAATGTTTGTGTTCCACTTTTTTTCGCAAATTAAAGTTGA TGCAGATCCAGTGACGGAATACTGTAGCGTCCTGCGGCTGCACCATCGCT CCACAGAGCGAGTGCGGTCCTTCCCGTGGTCGGGGAAATTGTGCTCCTCC CTCTCTCCCCCACGACTCGCTGAGCAAAGGGTAAAGTGTCATTGCTTGGG CGTGAAGCGGATATGGAAAGGAGATGTGCGAGCCGTGGCCACTGTGTTCG AGGCGGTTGTCATCTGTGTTGTCCCTTGTGTTGTTGGCGGGATTTGAGCG CTTTCTCGTGCGTGAGTGACCAAAAGATACCAGACAACACGAGGAATGAT ATGGTTCTAAAATATCTACATCGTAAACAGTAGTATTTCGTATTATACCA GGATATGAATTTTTCGAAATGAATTGATGATTCTGTCTGTGGTAGGACAA GACACTGAAAACACCCATATATCTGTTCTGGTTGAAGCAGGGCCACCTAC AGGCTACCAGCAACCCACGACGACGACGACGACTACAACGGTGGTAAGGG CAGAAGTCGCCTTCGTCGTGGAGAGCATCGTGCGCTCGCAGGGATCACTT AGCGAGATCACCATCCATGAAGGGCAGCAGTTCATCGGGGAGGAGGTCGC CGCAGGAGCAGGAGGAGCAGAAGCGGCGGCGGCAGAACCGCAATCGTCGC GAGCGGGGCATCATGGTGGTGTATCGGTCTCTTTGTTCGGAGGAGCAGTG CGCGGGAGCCTTTTCGAGGACGAATACTCGAGCGACTACTTTTGTGGGGT GAGAGAGAAGTTACATGTAGAGGCCTGCTTGAGTGCATCGTTGAGTCATG GTGGACGTCTCACTGCTTCCTCGCGTCCTGTACCTCAGCTGCTGTACCTT TCAAACTTCAAAACTTCAAGGCGGACCAGAACCGATGTTCTCGGTTTATT ATCATTCGACGAAGTACAAAACACCGGCAAAACACAGCACAGCAGCAGCG GCAGTGTACTGTATCGTATTCTGGTTGGATGATACAGAATGTAGATTTGT AGAAATTCCAACAGAAATGACTGCATACGGCACCCACACAAGCAGACCTT CGCGATGATATGATCCTACCTATGATTTCATTTCCGACGCTCATCACCAC ACAGCAGCACGACCTTCAAACACTCAATTCGCTTGACCGTCCAACTTCGG GGAGAGCTTTTTCTTTCCTTTTTCATATCATACTGCTGGATGCGTACCTG ATCCACCCTCAAGTGAGGGGTTTCGAACAGCGACTCGAGATCCTCTTGTG CGAAAAGATCGAGAGAGTGAGTTCAAGGATATCTCTGAAGAGAAGACCGA AAGAATGTTCCGACACGTCGACCGACAAGATGCATTTTTTTCGGCAAATA AAAAAAAACTCGGCGTGACGGTATCATACACGTTTTTATCTGCGGGGTCT GTGTCCATGACAGATGCAGTCCTGCTGCACGTGTACACGACCGCAAATTA TCCTCTGTGTACAACGATGACTCGGTATTTGATACTTTGAAGTATACAGC ACCTATGTTGTGATGTGGGAGGAGCCTGCCTGCTACCATCATGGCATCGC TAAAATTTATTTTTATTTTGAAAAAAACAAAAAAGGTATTTCTAGTCGTG GTGAAAATTTTTTCGGAATTTGAAATTTGAAAAGGTTGAATATATGTATA TGTCTTCTTTTTTTTAGCCTTTTAAGTTTTGTAAAAAAGTATGAAGTGGG CACACGCTGGCACAATACAGTAGCGGCTACGGTTTAAGAGAGGGTCGGGA CAACCCAGTGTTATTCTCTTAAATCGTGCTTTCTGTTATATCGTTTTGGC TACGGTATAACAGAGTATTCTCTTAAACGGTAGCCAAAACTGAAGGTCGT GAAACAGGGACTCTCACGTCCCAGCTAGACTCCGATCGTTTACTTCTTGT ATTCGATGAATCTTTTAATTCTATGGTAAAAAAAAATTTTTTTTACTTAA TCTATCAAGAAAGAAAAAAAATGTTAAAATTTTAATTCTGCAGCTTGAAC TTTTTCAAATTGTTTTTTCTTTATTACAAAAAAGATTTGTGTGAATAAAA CAGAAAAGGCAAAAATTATAAAGCCAATTACCCGCATTGGAGTAATGCCT AAAATGGTCATGAAGAGAGCGTATCATTAATGTTACATTGCGCAGCTAGC GTCAGAGCACCTTCGGTTCGCTCCACACGCCGCTTCATCTGTCGGATGGC GAGCACTTCAAGACCGAAGTACGTGGTACACTGCTGTACCTTTGTAGTGC GACACACTAGTGCGCGTGGATACTGTACACATATCTATACATATTTCGTT TTGTCAGTGATAGGTTTGCCGCATACTCGCACCTCTTCTAGAGAACTGCA ACACGGGACCAAGGATGCACCAGGCTGCTAGAAAAAAAACACCCTCTCAC CCACTGAATACCCCTCCCATCCCTTGCACCCAACGCCCAACACCCACAAC CCTACATCATCCCACCAACATATGAACCCACGAAGTAACAAGCGCTTCTT ATGTATATCGCACGCGCTGCAAAGCAACGTAAGCGTCTGTGTGTGTGGTC TATGTGTTGATGGCTATGTGACGTGGCCTCCAGAAGCTCGATTTAAGAGA AAATCTCAGAAATATGCTACATTTTCTCTTAAATCGATTTTGGGCGTGCC AAGCCGTTTTACTCTCTTAAATCTGTACTTTCTCTTAAACATTTTCCGTT AAACCGTAGCCGCTACTGTACTGGTACTGTACCAAAGAGTCACACACAGG AAGATGTATCCCTCTCTGTTTTCATTGCTAATCTCCCTGGATCCTCGTCT AGAGAGGTGAACACAATTATGTCTTTTTTTTTTAACTTACAAAAACATCA ATGTGTTCGCCTCTCTCCAGACAAGGATCTGGAGCAGATATTGCAACGAA CACAAAAGCAAAGTACGTCTACAAGTATTTCCATACTCAACAACCAGTGT ACCGTTGCAGCTCCCCTAAGGGTATCAGGCTCAACAAGACAATTTGGTGG TCGTCTTGTGTGACACACGTTACACAATGAGTTGAGTGTTTACGATCTAT ATGTCTTTGAAAAAAAAAAGTGCGCGGGGATCCGAGACACAAATTACAAA TTACATTTTCACATATTTACCCGTATAGTCTAACTGATACAGATGAATGA CCGGAAATTCCGAATCTCAATCTTTCGAATGCGATGATGGAAAAAAAGTG CGTTGGAAAAAAACGCATCACAGCAGTAAAAAAAAGGAGAATATTTTCTC GTGTACGAGTACAGCAATATGTCATATTTTCTTTTTACCGTTACCGTTCT TTTCGTGCCTACCGCTGTGTTTGTCGGCGGCTGAAGTGGGTACATTCCAT TTTTTTTAGCGTGACCCTCTGGTCAAGGGAGCACGTCACCTTCGGTACAC AGCATGATGCGATGCATCTTTGATACTTGCGTGGTGGCGCTCGCTACTGT GTGTGTGTGTGTTGTCGTCCCTTTGATTGGACGCCACTCTACACCTCTCG GGTAGGCCGACGCTCCAACTGGGGTCACACAGGGGGAAGTCAACATAGGA GTTTATTTTTTTTTCTCCACTTACTTCTGCGGTGCTTGCCTTGTTTGGTT GAGCTTTTATCGCGAGAAAGGGGACAGCAATCCCTTTCCCTCGTCGATGG TACGATCGAATTTTGTTTACTCACGAATTAATCTATTTCCACCTTCACGC GCATTGCGAGAAGAAACCACGGATCGTGTTACTGCACGGGATTCGACCTC ACCCGTGAATGTCAGAAGGTTTGGTGGATTACCAACTGAACCACCGGGGC GACCTGGCGCTCGCTACAGCTGAAGATTACTTTGTCGAACTGCTCTCTTC ATCCAAGTCTTCTTCTAATTTTCCTACATACACTTGTAAACGCATGCAGC ATATGTATGCAGCCATCAGTGCATATGGATCATATGTAGCTTATACCTGT AGCTGATAGTTGTTATAATCTTATCTTAATCTTTTTTTTTTTAACTTGAA AAAACATCACTGTGTTCGCCTCTTTCCAGACAAGGATCTGGAGCAGATAT TGCAACGAACACAAAGAGTCAAATACGTCTACCAGTGTTTCTATACTCAA CAACCAGTATATCGTTGCAGCTCCCCTGAGGGTATCAGGCTCAACAAGAC AATTTGGTGGTCGTCTTGCGTGACACACGTTACACCATGAGTTGAGTGTT TACGATCTATATTTGTGCTGTTTGCATCATCCTTGGCATAGTGATGGTGG TGATTTGATGTTTTTCGTGCAGCAGTGGATTTTACGTTCCTACAGACAAG AACACCGTTTTGAATTCCACAAATATATGCAATTTACACAGCAGTACTAC TAACTTTACGTTCTTATATGTATAGCGAAGGACATGCATGTGTATAGCTA CCGTGCTCTCACAATCTTGAAAGTGATCGATGAGGCGCGCGAGGGTGACG TCAAACATGCGCGTATCGAGCGGTTTTGGTCTTGTCAGCGAGAAGTAGAC GCCACGTGTCACACAAAAGGATGTTTTTCTCTCCCAATCACCTCCACAGC AGCAACGCGCGTGTGTGAGATTCGGTACAACGTGGGTGCTTGCGGCTTTC ATTTTGGACGATGACTCTGGCATTTCATGGTGTGTGCGCCGGCATGATGG GCCATCCAACAAGGTTACTTTTGGCACTTTAATGATGCCCGCCTGATTCT TGTTCAGCACCCTCAAGTTGGTGGACCCCCGAAAGTGATAAAAATACTGC CGGTCACCCGCAAATTGTAAGAAAAAAAACAATAAATAGTGTAGTCACCA GCATTCATTTCTCGGCATATGTATCATACAGGTACGTACTCGCCGTCCGC GAAACCTGACGGGGGTTATTTCTGTTTCTGACCTTGCGAACGTCGTACCG ATCATACATCCGCATCTATCTGCTGCCTATCGTATCTCACACGGCGTTCC TTCACAGAATAAGAACCACTACCTGCTGTCTTATCTCTCTCCTCGGTTGT CGTCGGGCGCACTGATTTCTTTCAAGGCACAGTAGGGTCAAAACTGATTT AATGTCGACTGCCGTTACGGGCCGCGCGATGAATCCTTAACTCATACCAA GCATATTTTTCTTCGCGGCCATATTTGTGTCGTTATTTTCACACAACAGC AGTGTTTTTTTTTTTCACCAACACTGCTGTCTGTGCTGGTTTGCGAGCGT CGATTTGTACTCGTACCCACCAGGACCTCCCTCCTCTCTAGTGTGCAGTT CGTCGTAGATGGCGCGTTCCAAGTCCACGGGTAAGCTCGCACTGCGCCGT CACTGCCCAAAATGCGACTATCATCAGCACAAGTAGCAGGATATTGGCGG TGTAATGCTAAACCACACCAAACTCTCTGCCGGGAAAGCTCGCCCTGCGT ACTCTCTGCCCCGACTGCGAGAGGCGGCAGGACAAGCAGCAGCAGCAATT GGCGGTGTATCATATCGCTGACCCACGCCAACCTATCTACCGCACTTGTC ATCTAACTCCCTAGTGGGGAGATGGGTGTGTCAGCGCAGCCTCCCTGTTG CGTTGCTTTCGAATACGACAGGAGTACATGTACGGCAGGAGGAAAGGGAA CAGCGAAGGGCATTGCTGCTTCCATTCCTGTGTACGGCGGTATATATGAT ACGAAGTCTCTCTAGTGATACATGTGATACTCACGACGTATTTTTGTGCC AGTTACATCCTTTCGCTACTTAGATATGTAGCATGCACTTCGAAGGGAGC ATGTACCACCCATCGGATAACGTGCCGCAACGGACAGCACTCGTCGGCGT GTCGCACGTGTTGTTGTTGTCGTTGATTCTCACATTAGCTCACTACCGCC GCAGTCTATAGCCCGTGGTTACAAACCAGGCACATATCGTGCTAGGAGGA AAAAAAGAAAATAAAAGAAATTGACTATGATGACCCACAGTCAAATCATA TAGGGTACCGTTGGGGTACCGTCTGTGGTGGCCAAAGTACCAAACAAAAT ACAAAAAAAATAACAGATTCGAAAGAAAAAACAAAAATTGGAAACAGTTC CAACAAAGAAAAAACAAGGCAAGCCTCAACCATAACCAAATACTTCGAAG TACTTCGTACATCGAACCAGGGCCCAGGGCCATGACAGCCCGAAGCAAAG GCAAACCAGGGCGCATGGTCCAGTAGCTACATGATCAAAGGACGAAAGAC AAAATATAAAGGAAGATACAGGGAGGGCACAAAGACTGAGGGAGGGTACT TGTACACAAACACGACGAGCAGGCCGCCAAACAAAGAGGAAGCAGGGGAG CGACTAGGGAAAGGAAAAAAAGAGACAAAGAGGAACAAAATACAAACATG GAGAGTGCAGATGGAAGACCGGGAGTACCGGCAGTGGGGGGATGGGGGGG GGTGATGATCAAAATAAAAAGGCATACGTACATGGTGTTGACTTCACCAG TTCAGCAGCTCCAGTATCATGGCGTGCTAGTGTCGGACATCGTGCCTGGA TCCCTTGTACGCGTGTGCTCTACGGTCTACCGGTACGTACATAGTATACT GCAACTAGAGGTGTTGTGAGAATTTCTCCAACATCACCTCTCTAGTCGTG GCACGGGCAGCCAGCCTTTCTGTCGCCTCAGTATTTTTCTTCCCGTCTCT TTTCATCGTTTCAACCCAAGTATTTCTGCGTATCGACCATCGTCGTCCTT TCACTGATGATGCACCAGTAGCTTATTTTTTATCTTCATATGAAATACCC TCCTATCCCCCCCCCCACCCCCGGCCGGTCGCAAACCATTTTTTCCTCAC CATTTTTTACCTTACATGTGTTCCTTTCTTTTTTCGACGTTGTTCTCCTG CTTCCGGAATAAAAAATAAAAGGTGGCCTCATCCGACGAAGCTGAAGATG ACAGTAACAGCGACAGCGTCGCCGCCACCGCTACCGCCACCACGACGGCG GAAGCCATGGCGCGCGACTTCAACGTCAACGGCAGCGTTTGCTGTGTCCG TCAGATCTCGGACGCCGACAGCACGACCTCCTGTGCAAGGCAGGTGTCCG ACGCTAGTAGCAGCAGCAGCGGCGGCGGCGGCGGCACCGGAGTTGGATGT ACGTTCGAGGGCGAAACGGACGATTATGTCAGCGGCACTGACTTTGTCGG TTGTGCTCAAGGCTCTGCTGCCTCTACTGATGTTGCGGCGGCGGCAGCGG CGCCGAAGTCATGGGGCGAGTGTTCCTTCGGCGGCGGCGACTACAGCGCC GGCGGCGGCAGCAGCGGCAACGGTCCCGGCGGGGTGCCGATCTCCTCGGG CCCGCATGCCGGTGGGTCATGGCGGTCGCCGACGGGCGGCGGCCCTAGAG TCACCGTTAGGATCTGCTCGCCCCCCGACGACAGCAACAGCAACAGCAGA CTGCGCAGGACCGTCCCTCCCCCGTGGCCGATGTCGGCAGTGCCGCACTC GTCCATGATGAACACCTGGCAGCACCACGGTCACCTTCATCGTCGCGGCC GCGGCGGTAGTGACGAGGAAGACGGGTCGCTCGTGTTCGCCAACAGGTTC GCTCCGAGTGACGACGCCAAAGTGCTGGTAGAGATGGCCCGCCTTCGACT CGTTGACGCCGAAACTGCAAGCGCTTGACGAATTAACGCGAAGATAGGTG GGTTGGCTGGTCGACTCAAGAAAGATGATCCACCCCTTGGATTATGAGTT GATTATGAATCATCATCATCACCGCTCGCTCTTGGGCGTCTGTTGGTTTA TAGATTGGCTTTCTGGTTTGTTTCTGTCGTGGCCACGCGTCAGGTACAGG AACAGGCGGGAGCTTGGGTGGTGGTGGGGGCGGGTCGTATGAGGAGCGAA TAGCCATTTTGTTCACAAGGGAGGCGGAAGGTGTGAAGACGCTTTTCGTG CGGAGCGGAAGAGAAAGAAAAAGGTTGTTTGGCTCTCGGTACGAAGTAGA GTTCTCGTTGGAGCCACGTGCAAAAATAAGAAAATGAATGTCTGGGTGTG GGTATTGGTCAACACGGTGGCGCCATCGCCGTGTCGTACCGTACCTCACT CGCTATCGTAGCGTCTTTTTACCGCGGGTGTTTATTTCTCCGTGGGCGTC TTCAACGCGACGATGATTCATCCCTCTTTTTTTCTCTTTTTTTGTGTAAC AGCAGCTATTCCGTTCAGCTCGATTAGCCTACGTGTTTGGTTTTTACTCT TTGCGAGGTTGATTCCCAGATCAAGCCAGAGATTTTATGCTAGAGCGAGG ACAGGGAGAGCAAAAAAGGGTCCCTGATTTGTGGCTCATGATCGGTCGAT TCGTCGGTAGCATCGCACAGAGATTATAGGTCTCAGTCGTTTGGTTCGCC TTGAGGAGGAAGGTCTACATGGTACTGGCATTTCTTTTGCCACGGTGCGC GACAACTAGAGGGGAGGGGCCGGCCATTGCCGTTCTCTCATCAGCATGCC CGTCTTGTGCCGGGGGCGGTGGTGGTGATGGTGGTTGAGGCGATACTGTC TGGGCGCAAGTCGTTTAGGTGGTGCGCTCGCAAGAAGCCGGTCTACACGA CCTGGTTGTTTTGTACCAATGTAGGTGGTTGTATCAGTATTATAAGACAA GTCGATGGGTTTCACCGAGAGAAAGCTACGTCAGCTCCAAATATGTCTTG TATCCAATACTGCTGTGAGGGGTGTGTAAGGGTTGGGTTCGTAAGGGGGG GGGGAGGGAGAGCTCCCTGCTGTCCATTCGCAATGTCAAGTATACATCCG AGTGTCGTCGAGTTTACTCGTGTAAAACTGAGGGTAGTTGTGAGTTCGAA TTGTCGGCGGGACTGTGTGTTTCCCCGACAGGCCTTCGTTGGCGTGTTGG CGTATGTTTGCCATTCCATGGTTGGTTTTCGTTGGTCGATCCCGTCTTGG GCGGTATTTTTATATACATGCGTACCTGTATTTGTTTTGTGCCCATGCCG AAGTCTACGGGAGCGTCCGTTTTTGGGGGCGTGGGTTGCCGCATCCATGA TGTCATATCAGATGATGCTTGCATTGAGTCCACTCTGCAGAGGCAGGCTT GTTTTTATCGCTGTTGTTTGTTGTGGTGGTCTGTGGTGGTGGTGGAGGTA GTGGTGGTGGTGGTAGAACGTTTTCCTTTTTTTGCACTCATTTTTTTCTT GTTACTTGAGAAGGACATGCCGGCAGAAGTATCTCAGAAGTTGTTCCTCC AGTTTAGGAACATCCTTTTCGGAAAAAGACCAATAGAACATGCAAAATTC AAGTTATTATATTGAACAAGATGGACCGAGGCAAACCACAAAGTTGGCGG TTGGATTTTTAAGATGACGTTAGGGGTGCTGTTGTTGTGTTCCTTGCATG GGAAGAGTCTGCGGAGGTGTTCACAACGCACGTATTCGTCGGGCGCTCTT GTTGAATGTTGCTGCCGCGTTTGAATTACCGCACTATTTGCGGCGTGTGT GATACTCGCGGATTACGGTAGTGGCTCAGGAGCTGAACTGTCACAGCAGG AGCAGCAGCTGGCGTACGTGTACGTGGTATGATGCGCGCGGAGACGGGGA GTTGATGACGGAATGAGGCGGCTTGTACAATACGGCAACTCCATTGTTGG ACACGAGTAAACGGCATCACTCCGTTGTTGATGGGTGGCGTCGAAGAAAT TTGGTAGTCTTCGCATGCCTAATTTTTGTTTTTGGGCCTCTTTTTTTTTC AAGACGGAAATCAAGCAATGACTGGATGTCGTGCGACAAATAATATCCGT CACGCGTAAGGTATACAGCAAAGGTTAGTTTACTATTAACACCCATATCC CGAGTTTGAGGAAACAGCAGTCGATTGCTTGGGGTTAGCTTGCCCTTGAC TGGATTTTAGATTTGCGGAGCAAGGCAAACCCGTGCTGTGATAAAGATAG TACATTAGAAGCCGTCCGCGTAGTATAGGTCGCAGAGAATCCACCGTGAG TAGAAGCAGCAGCAACATTGTAGGCAGTCACTTTGTTGAGCGGCTTAGCG CTTTTGCTTTTGCTTTCGAATGCCGAGCGGGGAGAGGAGGCCTTGGCTGA GTCTTGAAAAGTCTACGTGAAGAACCCTCAGCGGTTTCATTGACGGGCGA AATGATGATCGTTGTTGACCGATGGATTTAGCTATAATGTGCGAGCTAGT GGTGGAACATGAAGTAGATAGGGAGCGTTTTTTTTTTCTATGGTTTTCTT TCGACATTTCGAATATTTGTGTAGTCCCAATTTCTCTCGGCAAATGTGAC ACGTTTTCCTTCTGTTGCTTATTCGTTGAGAAGTGCCGGTTCGCTTATTG TTTTCAAATTTTTGCTATACACGATGTGTGGAGGGTGGCCAGGCAAGACA AACCAACATACGCAAGAACTGAAGGGGGTAGGTAGACGGAATGTTGAAAA GTCTTTATTCGCGTGCCGATGGTTTTGGTGGTCGGTTGCTTCCTGCGCAA TCGGGTCTCTTGTTGTAAGTATAGTTGAGTGATAGAGGAGAGGAGGTAGT ATACATACCTGGCTATATATGGCTTTTCTCGTTGAGAGGGAATAGTGAGA GGTAGATGGTGCCGGGTTGCTTGGTTGTAATCAGGTGGTGCTGTTGAGGA ATCTGTCGTCTGCTGTGGGGGCGGCGTCTGGGTAGGTTGTGCCTTTCGGT GCGTGCGGTGTACACGCAGTGATGCCGATTTAGTTTTCCCTGTATGTATG CATACAACACGGGGTATCGTTTGCTTTGAATGCGAAATGCATGATGTCGG GCGGGCGGGTTTAAACAAGTAAACTTCACACTCTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig147:154696..165980+

>mRNA_P-littoralis_Contig147.24.1 ID=mRNA_P-littoralis_Contig147.24.1|Name=mRNA_P-littoralis_Contig147.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1272bp|location=Sequence derived from alignment at P-littoralis_Contig147:154696..165980+ (Pylaiella littoralis U1_48)
ATGAAGAGGAGTAGAACATGCTTGAACTTAGTGGAGCTAGATACCACGAC
GGCTTCTCCCAAGAGGACTTGTTCCCTTCCAAACTTGGCTTCGAGTGGCA
GCAGCAGCAGTTTCTACATCAATAATACCACGGCTGCGGCTCTGAGGCAG
AACCGTCAGGACACGTTGCCGTTTTTCCACCAATACACAGCACCGTCAAT
GTGTCAAGGGCCACCTACAGGCTACCAGCAACCCACGACGACGACGACGA
CTACAACGGTGGTAAGGGCAGAAGTCGCCTTCGTCGTGGAGAGCATCGTG
CGCTCGCAGGGATCACTTAGCGAGATCACCATCCATGAAGGGCAGCAGTT
CATCGGGGAGGAGGTCGCCGCAGGAGCAGGAGGAGCAGAAGCGGCGGCGG
CAGAACCGCAATCGTCGCGAGCGGGGCATCATGGTGGTGTATCGGTCTCT
TTGTTCGGAGGAGCAGTGCGCGGGAGCCTTTTCGAGGACGAATACTCGAG
CGACTACTTTTGTGGGGTGGCCTCATCCGACGAAGCTGAAGATGACAGTA
ACAGCGACAGCGTCGCCGCCACCGCTACCGCCACCACGACGGCGGAAGCC
ATGGCGCGCGACTTCAACGTCAACGGCAGCGTTTGCTGTGTCCGTCAGAT
CTCGGACGCCGACAGCACGACCTCCTGTGCAAGGCAGGTGTCCGACGCTA
GTAGCAGCAGCAGCGGCGGCGGCGGCGGCACCGGAGTTGGATGTACGTTC
GAGGGCGAAACGGACGATTATGTCAGCGGCACTGACTTTGTCGGTTGTGC
TCAAGGCTCTGCTGCCTCTACTGATGTTGCGGCGGCGGCAGCGGCGCCGA
AGTCATGGGGCGAGTGTTCCTTCGGCGGCGGCGACTACAGCGCCGGCGGC
GGCAGCAGCGGCAACGGTCCCGGCGGGGTGCCGATCTCCTCGGGCCCGCA
TGCCGGTGGGTCATGGCGGTCGCCGACGGGCGGCGGCCCTAGAGTCACCG
TTAGGATCTGCTCGCCCCCCGACGACAGCAACAGCAACAGCAGACTGCGC
AGGACCGTCCCTCCCCCGTGGCCGATGTCGGCAGTGCCGCACTCGTCCAT
GATGAACACCTGGCAGCACCACGGTCACCTTCATCGTCGCGGCCGCGGCG
GTAGTGACGAGGAAGACGGGTCGCTCGTGTTCGCCAACAGGTTCGCTCCG
AGTGACGACGCCAAAGTGCTGGTAGAGATGGCCCGCCTTCGACTCGTTGA
CGCCGAAACTGCAAGCGCTTGA
back to top