mRNA_P-littoralis_Contig147.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig147.69.1
Unique NamemRNA_P-littoralis_Contig147.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig147.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig147contigP-littoralis_Contig147:437466..438970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1496
Hectar predicted targeting categoryother localisation
Exons2
Cds size804
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789691.1601682-UTR-P-littoralis_Contig147:437465..4377101680789691.1601682-UTR-P-littoralis_Contig147:437465..437710Pylaiella littoralis U1_48UTRP-littoralis_Contig147 437466..437710 -
1680789691.1850836-UTR-P-littoralis_Contig147:438514..4385401680789691.1850836-UTR-P-littoralis_Contig147:438514..438540Pylaiella littoralis U1_48UTRP-littoralis_Contig147 438515..438540 -
1680789691.1938198-UTR-P-littoralis_Contig147:438549..4389701680789691.1938198-UTR-P-littoralis_Contig147:438549..438970Pylaiella littoralis U1_48UTRP-littoralis_Contig147 438550..438970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789691.173177-CDS-P-littoralis_Contig147:437710..4385141680789691.173177-CDS-P-littoralis_Contig147:437710..438514Pylaiella littoralis U1_48CDSP-littoralis_Contig147 437711..438514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig147.69.1prot_P-littoralis_Contig147.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig147 437711..438514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig147.69.1

>prot_P-littoralis_Contig147.69.1 ID=prot_P-littoralis_Contig147.69.1|Name=mRNA_P-littoralis_Contig147.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=268bp
MVVNKYADPNRGGAGSGGGLGGASVSGGGGGPGDIAATNSRLTALEDGVK
SIKDLLLQQQQQRVISHPPPQIPAWPHPQWGPPGAPGGPYHPYSFGGMAA
AGGPMAGVQQNVPAPSALPGSGAGQAAGDGDAQGRRGGSPAAILPESGIV
ESAPAGTVRPPGQAVCLPRTPSSSRTVAAGEAMQGGGSDSASGVRQARSD
AHGSAPGVSGQTAGYEGGPGRGGAGSSEGSSEGHRSGRVAGGAAGGGKRR
KIGKQTEGDKNINPPWK*
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mRNA from alignment at P-littoralis_Contig147:437466..438970-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig147.69.1 ID=mRNA_P-littoralis_Contig147.69.1|Name=mRNA_P-littoralis_Contig147.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1505bp|location=Sequence derived from alignment at P-littoralis_Contig147:437466..438970- (Pylaiella littoralis U1_48)
GGAGGCGGCCGTGGTTCGAGGGGAGGCGGCCGTGCTTCGAATGGAAAAGG
TAAGGCTGTTTCACGTTCTCGTGGCCCCCCCGCTGGGTCTAGGAGCCCCA
GCCTTGTGCCTCCCTCGGGTTCGCAAGGATCTGGCGCTGGTCCCGGCCTA
CAGCAGTTCCAGGGTTCGGACGATGTGCGGAATGCAAATGTTTCAGCCGT
AACCAGCAGCGCCCAGAGTGGGCAGGGCGCAACAGGCGGGGCGGGAGGGT
CAGGGCATGTAGATGAAGACGACGAATCCGAGCGTGAATCCGCCCAGATA
GCAGCTGACGACACCGAAGCAACGGCCCTTTCCGGAGGTACTTTGGGTAG
GCAACAGCGGTCAGGACAGCTCGGAAGGACGCGTGCAACGGTATACCGTG
GCGACCCAGCGACCTTTGACGGCAACATAGGGCACCAAATCAGCTCTGTC
CTCAGCATGGTGGTGAACAAGTACGCTGACCCGAACCGGGGTGGAGCTGG
CAGCGGGGGTGGTTTAGGAGGCGCAAGCGTGTCCGGAGGTGGTGGTGGAC
CTGGGGACATCGCCGCGACGAATTCTCGCCTAACAGCATTGGAGGACGGA
GTGAAAAGCATCAAGGATCTTCTACTCCAACAGCAACAGCAGAGGGTCAT
CAGCCACCCGCCGCCGCAGATCCCAGCCTGGCCCCACCCGCAATGGGGCC
CGCCAGGGGCGCCAGGAGGTCCCTACCATCCCTACTCTTTTGGCGGAATG
GCAGCAGCGGGTGGACCCATGGCAGGAGTTCAACAGAATGTGCCTGCTCC
ATCTGCCTTGCCTGGGTCGGGGGCGGGTCAGGCGGCGGGTGACGGTGACG
CGCAGGGCCGACGTGGTGGAAGTCCTGCAGCTATTTTGCCTGAATCTGGT
ATCGTAGAGTCAGCTCCTGCAGGGACAGTTCGTCCTCCCGGACAGGCTGT
TTGCCTGCCACGCACTCCCTCTTCCTCCCGGACGGTTGCAGCGGGGGAGG
CGATGCAGGGGGGGGGCAGTGATTCGGCAAGCGGAGTACGACAGGCGCGC
AGCGACGCCCATGGCTCTGCGCCGGGTGTTTCAGGGCAGACGGCAGGATA
CGAGGGTGGGCCGGGACGAGGAGGAGCGGGATCATCCGAGGGGTCCTCAG
AAGGCCACAGGAGCGGCAGGGTAGCTGGTGGTGCTGCGGGAGGTGGTAAG
AGGCGAAAGATAGGAAAACAGACGGAAGGTGACAAAAACATCAACCCCCC
GTGGAAGTGAAAGTAGATGTTGCCGTCACTGAGGGTATATCGTGTGTGTT
AGCCCTCGATTTGTTTATGTTCGCGTGCGGAGTGGCACGCGAGAAGCACG
TCATGGTTAACAATAGGCGTGTAGATGACATCGGTAATATTTCCAGTTCC
TGCTTCGCATTTCCAGTTTTAATATATTGTTGACTGGTTTTTGCCTACCC
TTATTTCCTTTTCGCATTTAGATCGCTTCCTGTGGTCTGGGTATGTATAA
CTAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig147:437466..438970-

>mRNA_P-littoralis_Contig147.69.1 ID=mRNA_P-littoralis_Contig147.69.1|Name=mRNA_P-littoralis_Contig147.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=804bp|location=Sequence derived from alignment at P-littoralis_Contig147:437466..438970- (Pylaiella littoralis U1_48)
ATGGTGGTGAACAAGTACGCTGACCCGAACCGGGGTGGAGCTGGCAGCGG
GGGTGGTTTAGGAGGCGCAAGCGTGTCCGGAGGTGGTGGTGGACCTGGGG
ACATCGCCGCGACGAATTCTCGCCTAACAGCATTGGAGGACGGAGTGAAA
AGCATCAAGGATCTTCTACTCCAACAGCAACAGCAGAGGGTCATCAGCCA
CCCGCCGCCGCAGATCCCAGCCTGGCCCCACCCGCAATGGGGCCCGCCAG
GGGCGCCAGGAGGTCCCTACCATCCCTACTCTTTTGGCGGAATGGCAGCA
GCGGGTGGACCCATGGCAGGAGTTCAACAGAATGTGCCTGCTCCATCTGC
CTTGCCTGGGTCGGGGGCGGGTCAGGCGGCGGGTGACGGTGACGCGCAGG
GCCGACGTGGTGGAAGTCCTGCAGCTATTTTGCCTGAATCTGGTATCGTA
GAGTCAGCTCCTGCAGGGACAGTTCGTCCTCCCGGACAGGCTGTTTGCCT
GCCACGCACTCCCTCTTCCTCCCGGACGGTTGCAGCGGGGGAGGCGATGC
AGGGGGGGGGCAGTGATTCGGCAAGCGGAGTACGACAGGCGCGCAGCGAC
GCCCATGGCTCTGCGCCGGGTGTTTCAGGGCAGACGGCAGGATACGAGGG
TGGGCCGGGACGAGGAGGAGCGGGATCATCCGAGGGGTCCTCAGAAGGCC
ACAGGAGCGGCAGGGTAGCTGGTGGTGCTGCGGGAGGTGGTAAGAGGCGA
AAGATAGGAAAACAGACGGAAGGTGACAAAAACATCAACCCCCCGTGGAA
GTGA
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