mRNA_P-littoralis_Contig147.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig147.27.1
Unique NamemRNA_P-littoralis_Contig147.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig147.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig147contigP-littoralis_Contig147:170562..178440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size385
Hectar predicted targeting categoryother localisation
Exons2
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789691.0694-CDS-P-littoralis_Contig147:170561..1707081680789691.0694-CDS-P-littoralis_Contig147:170561..170708Pylaiella littoralis U1_48CDSP-littoralis_Contig147 170562..170708 +
1680789691.0786889-CDS-P-littoralis_Contig147:178202..1783611680789691.0786889-CDS-P-littoralis_Contig147:178202..178361Pylaiella littoralis U1_48CDSP-littoralis_Contig147 178203..178361 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789691.0896215-UTR-P-littoralis_Contig147:178361..1784401680789691.0896215-UTR-P-littoralis_Contig147:178361..178440Pylaiella littoralis U1_48UTRP-littoralis_Contig147 178362..178440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig147.27.1prot_P-littoralis_Contig147.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig147 170562..178361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig147.27.1

>prot_P-littoralis_Contig147.27.1 ID=prot_P-littoralis_Contig147.27.1|Name=mRNA_P-littoralis_Contig147.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
RGSPHSYDHLAAAVRPAPPRLPLWLSPSRIVRESQRKRYTRVDPPRIEEV
TAGQRTGQPGLTRAWPVDLRVTQNPGLCVSSDTQSENLTGRCVSVTRNLK
V*
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mRNA from alignment at P-littoralis_Contig147:170562..178440+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig147.27.1 ID=mRNA_P-littoralis_Contig147.27.1|Name=mRNA_P-littoralis_Contig147.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7879bp|location=Sequence derived from alignment at P-littoralis_Contig147:170562..178440+ (Pylaiella littoralis U1_48)
CGAGGATCACCCCATAGCTATGACCACCTTGCTGCTGCTGTACGACCAGC
GCCACCACGACTACCGTTGTGGTTGAGCCCCTCACGGATCGTGAGAGAAA
GCCAGAGAAAACGATACACGCGCGTAGACCCCCCCCGGATCGAAGAGGTG
AGACCTACCAGCTTGAACATATTTTGGTTGAAGCCTCTGGTATTTCTCTT
GTTGATTCAATGTTTGCCATTGGCCACTGCTGTTATCTGCTCCTTGCTCT
CTCTCTTGAAGTGCCGGCGCGGACAACCGCCGCAGATACCGTATATATCC
GAGCATATCAAATGTACCGGCCAGGCAGGACTGCCAGGATTTTCATTATC
AAGCACGACATGAAGCACAAAGAGCACCCCTTTTCGTAGAGCACCCCTCG
TATCTAGAGCAACAAGAAGCGGGTGGGGAATGGGGCAGCCGAGATGAACC
AGAAGAACGGCAAGTACGTACAGACCGCGTATGTACGTCAGCACAGGCAT
TTTTTTTTTCTGATGGAAAAAAATTCAAAAGTTTTGCTATGCTGACGCTT
TGCCGTGTGGTGTGGTGGTGAACAATACTAGTTGCACTATGTCATCCCAC
TTTCGTATGTACGATATACACAACAGCATGGTTTATGGCACAACAAGTGA
TGTGCACAAACGTACCGCACTTCTCTTCTGTGTCATCATCGTTTGCTCCG
TGAAAAATGACATTATTCGCTGTTGTTCTGCGTTCGCCGCATTTTAGGCG
GTTTCTTGAGGGCCGGATTTTTTTTTCATTTTTTGATAGAATCCGAACGA
ACTTTTTCCGGCCAACGGCTGCCGATCCGCTGTTCTATAGGTAATGGGTG
TTCGGATTTTCGGTGATCCTTTTTTTAAGTAGGTGGTTGAAGAGTCGGCT
CCAGAGCATATATCTGCATCGAAGGACCGCATGGTGGTGGTGTTTCTTGC
GCTGAAACCCGTTTGCATCGCCGCTCGTAACTTTCGAACGAATGAAGACA
CAGCAATGACGAAGGCATCTTCCGTGAGCTGTGCATATGATCCCCCTCGT
CGTGTCGTGATCGCTTGGGTTGGGGTTACATCCGTACATTCGCAACGTAG
GTTTGCTCGTGGCCAACTCATGCGAAACAAATTGAGAAAGATGTGTCAGC
CGGTCTGCTGTACAGCAGCATTATTTTATACTGCTGTATGTATAGTAGTT
GTACAGCAGTAGAGAAAGGAGATGACAGCACGGGTTCTTTTTTACAACAC
AACAACATGCCACAGCCACGAGCGATGACCATTTTGCGAACATGCCAGTG
TGATCCTCACCCAAACGATTACCACGCGAGGGGAGCCATACGCACAGCTC
ACGGAAGATGGGTTTGTCATCGCTGTGGCTTCATTCATTGGGGAGTTACG
AGCGAAGATGCAAACTGTGGTCTCACTCAGAGGAAGCTTTGATACTCCTC
CTCCTGCTGCTGCTGTGCTGATGATGCTGCTGCTACACGGTTGGTTTTGG
TTTCTGATGAACACGATGGAATGGATGATGACGCGGCAAGCGTACACAGA
AAGATGGTGGACACATGTATGGACAGCAGCAAGCAGTAGTAGCAGCAGCA
GCAGCAGCAGGAGCAGAAGCTGCAACAACACAGAAAGTAGTGGCAGCTCT
CCTCCTCTCTTTGATGCTCTGTTGTGATTAATATCGTTTGTTTTGTCCAC
ACACAAAGAGAGAGACAACTTCACACGTTTTTTTTTAATATATTTTCCGA
ACGCATTTTCCGAACTGGTTGAGCGTTCGGAAAATGTCCGATTTTCCGAA
CGACATCCGATTAAAAGCTGTTCGGAAAATTTTGTTCGGAAAATGTTGTT
TGGAAAAAGGTGTTTTCCGAGCCTATAAGAAAAGCCTTGACTCTAAAAAA
ATTCGGAATCTATCAAAAAATGAATAAAAAATCCGGCCCTACAAGAAACC
GCCTTACGCAGCACATATGATATCAAGACACAATCTTACGAAACTTATTT
GTATGATGTGTACGTGTTTGATGGGCAGACGGGATCGACAGATACATAGA
TCTAGGCGTCTTGGATTTGTAGGGGGGGGGTGGTGATGAATCGGCCCCGG
CGAAGGTCTAAATATGTTTCGTGGTGGATGATGTACTCTGTCTGATCATT
TTTTTTTTTTAACTTACAAGAACATCAATTTTTCAATTTTTCGAAGTTCG
AAATATGTTCGTCCTTCGTATCAATCTGGGTTCCCCAATGGATTTTATTT
AGTGTCTCCCCAAGGATATTTTCAAAAACGCAACGAAACGGGGATGGTCC
TCACAAATGAAATATCCCCCCATCTGAAGTGGCTCTCATCGTGCCGAAAT
TAAAGTTTTCAGGGCTGTTCACCGGTTATGACACGACCCGTGAGTCGTGT
CACCGCATGTTGAAAATCTGCGGGTCGGGTCGTGCCAAGTGACACGCAAT
CTCAAAATCTGACGGGTCGTTGCGTATCACTGACCCGCAATCTCAAAATC
TGACGGGTCGTTGCGTGTCACTGACCCTCAATCTCAAAATCTGACAAGTC
GTTGCGTGTCAATGACCCGCAATGTACGGGTTGTTGCGTGTCAGTGACAC
GCAATCTCAAAGTATGACGGGTCGTTGCGTGTCACTGACCCGCTATCTGA
AAAGCTGACTGGGTCGTCGCGTGTCACTGACCCGCGATCTGAAAATCTGA
CGGGTCGTTGCGTGTCACTGACCCGCACTGTACGGGTCGGGTCGTGTCAT
GACCCGCGACGTACGGGTCAATTTACGGGTCAGTCTTGAGTGACCCGTGT
ATTCGACCCGTCCTGACTCGTGCGGTTGATCCGCGGTTCTTACCCGCGGG
TCAGACCGAACCCGGGCCAAATCAAGAGCCGACATGCAATTTGCGTACGA
CAGACAACAACAGTGTAGACGTGAGGGGCTTTCTGTACGGATCAACTGAC
GGCTCACAGGCCTGAGTGACCCCATGTATGTGACCCCTCCTAACCCGCGC
GGTCGGATCGCGATTTTTACCCGCGGGTCAGACCGAATCCGGGCCAAATC
TAGGAGTCATTTTCGTACGACAGACAACAACAGTGTGTTTGGTGCCGAAA
GCTTCGTCAGAGGCCGAAGGAGGAAAGAAGGTTGACTCAAGACCTTTATT
CTTAACGAGTGAGCATACAGCGGTGTAGCCCAGCCAGGGGCCCCGCCATA
CACCCATACACCACACAACACCACACACATTCCCAGAGTTCCACATAATA
CGAATCGAGTACCGTGTACCCCAAACAGCCCCCCTACTCGGCGCTCGATA
CGATTTGCAGAACTCCTCTCATATCTTCATCGCCAGGTAAAACGGCAATG
AATCCAAACCTCAAATACTCTTTAAATCATCAATCATTCCGATCCAAAAC
GTCTTCCGAATCTTCTGATGTCAAATCAATATCCCCTACGAAAGGTCCGT
CAACAGACAATTGAAACCCTCTCGAGAAAATGGTATCCACGAACCGCGAC
CTCGCGTTCCCATATGTTCCCAAGCCGTCAAAATACCAGAAATACCCTCG
GGAAATACCCACACAAAAATCAACACTCTATTGAAATAGAGCAGAATACG
CAAACAGTGATGTTATTCCACCAACCAACCGGTGATCAAACGGTCGTACT
ATTCCGTAAAAATGGCTCAATTCATCCGAACAAATTCCTCAAACGAAACC
AGTGTTCAACGTTTTGACCAATTCAAATAAGCTTCGGAAGCACGAAGGCT
TCAACCATACTTCCATCAAAACATGTCAAATCCTTCCTCCAAAATACATC
ATAAAAAGCAAAATCAGCGAACCTGCGAAGTAAAATCTCAACGTGTACGA
CGACAACAGGCGTCAAGCAAAAACCTTCATCGATGCGACTGCAGCTTCAA
TATCTTACACATGAACCAGTGCCCAACAGCCCCCCTGCTGAGGCATCCCT
TCAGAACATGAAACAAATATGTGCCTGTTTGCAGTCCTGCAACACAATCA
GAGATACTGCAAGTTAAAACCAGAACACAATTTCCCTTCAGATTTCAGGG
AAACCATTCAACACCAAAACCAAATCACGAAACGACCAAAACTCTGCTGA
TATACTGCGGCGAGAATCATGGAACACAAATCCCCCCCCCTGATTCTCGA
CTGCAGTACAGTCAGTGCATGTGTACATCATGAAATTCTGCATGCTGAAT
AGAAGCAATCACACAAAACAAAAACCAACATCATAATCCAGACCAACACA
ACACCGAAACCGTGTACACGATCAGCAACAGCCTAGCTTGCACACAACCA
CGAGACAAATGTTGCTCCTCTACTCTGCGCACGTGGACAACGCTTAAAAC
GCTGCAAATTGTGTTGGAAATTAAATCAGAAACACACATCCACCGTGCGC
CAAATCGTTTGCAATATTCCGTCAAAAACATACAATCACGGATGTACGGT
GCTGCCAAACAACACAGCTGCTGTCAGCCTCAACCCTTCGAATTTTTTGT
CTCTACACGCGCGAAAAAAACAAACCATAAGTTAGAAAGCACCAAAATCA
AACATCATGTCGGGAATGTCACAATAATTCAGGAATATCACAGATGAACC
GCACAAAATCAAATTAAATACTAGTACATACGCAAGCGTAACATGCCTGA
ACAGGTCAAAACCTTAGCTGCGGCACGCTGCTGTTGTAGTTCTCGTTCTG
CCGAATCCACCGCCCCCCGGCACGAAGCCCATCACCCTCCATGCTGCACA
CGGCGCAAACCTTTTGCCGCGATCGAACGGGCGCGTCACCCCGAGGACCT
CCCTTCCTCTTCCGCGAAGCTCGAGGAACTCTTGCCGGAGTCGAAGAGGG
TGCGTTGGTGCACTCCCCCATTTGACGTTCCACCACTCATCGTCCCTGTC
TCCACCGCTGTCGTTGCTGCTGCTGCTACTGCTGCTGTCGTCTCCAACTG
TCTCCGCACACCAGCAGTTGCTGACCTCCAAAATGACACAGCAGTCCTCC
CCCAAGACCAACGTCTCGCTCAGCTGCCCTGCCTTATGCCACTTGATTTC
CACAGTTGGCTCGCCCCCTAAAGGCGATACCACCACTTCCTCCACCGGAT
CCATCTGCTGCTGCTGGACTTCCGGCTCTTCCAACGGTAATTCCGCCACT
CACTGTCGCCGTCGAATGCTCCTCCTGTATTGCTCTACTTGAAAATAAAA
CCCCTACCCTGCTGTCCCAGTCTCTCGTACTACTGTCCCAGCTATAAAAC
CTCCGCTGTCCCGGCCTCTCGAAGTGCCGTCCCAGCTATATACCCACCGC
TGTCCCGACCTCTCGAAGTGCCGTCCCAGCTATAAACCCACCGCTGTCCC
GACCTCTTGAAGTGCCGTCTCAGCTATAAACCTACCGCTGTCCCGACCTC
TCGAAGTGCCGTCCCAGCTATAAATCCATCGCTGTCCCGACCTCTCGAAG
TGCCGTCCCAGCTATAAATCCATAAATATCGTTCCACCGCCCGGATCACG
GTTCCACGACAACTCCAACGCCAATACCCCGCCGCGACACAGGCCTACGA
TAAAATCGTGTTTGGTGCCGAAAGCTTCATCAGAGGCCGAAGGAGGAAAG
AAGGTTGACTCAAGACCTTTATTCTTAACGAGTGAGCATACAGCGGTGTA
GCCCAGCCAGGGGACCCGCCATACACCCATACACCACACGCATCCCCAGA
GTTCCACATAATACGAATCGAGTACCGTGTACCCCAAACACAGTGCAGAC
GTGAGAGGCTTTTAGTATTCTCGCATGTCCAACGCGAGGTACCGTTGTTG
CTTCAGAAACATATACGTACTCGAAGGCGGTCATTGCTGCCCTGTGGGTG
GCACACTTTGCTCCTCCTTAGGTGTTGGAGTATCGACCCTGCACCCGAGT
TGCCTTTGCAGGGCTGATACATCGACGTGCAGGCAGTGCCGTCGTCCATT
TTCAAGGCGCACTTCACTTTCTTGCCATCAGCAAACGGTGGGGAAAACTT
TGTGAAGAAGCGCCAAACGACGGACGTCATAGCACCGTGTTGCTGTGCGA
CGTCCACCTTCGTTTGCACGGTTGGCCAAGTTGCGGTCCCGCCGCCGAGG
CCGCAGCACCAACGGAAGGTGACGCAATTGGCTCGCCGTCGCGCTGGAGG
GTCACCGACGGGTTGGAGGAGGAAGCCATCACGTGTCAGGTCACCAGTGT
AGCACGGGTCGCCTGTCGGGGTCAGGCTGTGACTGTTGTGTGAGAGGCGG
CCACAGACCACAGACCACAGACCACACGCACACACACATTCCACACATAG
GACAGATCCTGTTCTAGGTCACCTGTCGACCACAGAACGTGGGTTGGAAA
GATCTAACAGGTCACCTGTGCGCACAGAACACCAGTTGGAAAAATGCAAC
AGGTCACCTGTGCGCCACAGAACATCAGATGTTCTGTGGCACAGGTCACC
TGTGCGACAGAACATCACTTGAAAAGAATGCAACAGGTGACCTGTTTGCC
ACAGAACATCGGCTGGAAAAATGTAACAGGTCACGTGTGTGCCACAGAAC
ATTACTTGGAGAAATATATAAAGGTCACCTGCGCGCACAGAATAGCGCTG
AACAGAACATGTTCCACCTGTACCACAGAACAATGAACAGATCAACCGGG
AACAAAATTACGAAGTTGTGAACATGTGTACATTTACGTAGTTGTATACT
TACATGCGTGCAACATGCGACCTGGTGTTCTGTGCGTACAGGTGACCTGT
CACATGTTCTGCCAGTACGCCCCCCTGTTGTTGTGAGCGTTTGATTAAAT
GTGAATAGGCTGCTTTTGAAGTGAACATCGCAGGGTGAACAGAACGTACA
ACACGCCATGATATACGACACCCCCTCCCCGATCTGCAAAAAAATGTGGC
ACATCTCGTTGTCCTACTCTAATCGTCGGAGGGCTTTGATCACCACCACC
ACACCCTCCTCTATAACCTCAACGTCTGCATCTTCAGCTGGGGCAACGGT
AGGAGAGCTGCTGCCACGGACGTCATCCGCCATGCTACGTCGTTCTGCTT
GTCCTACGTGTGCTGTAGAGCTGGATGTGCTGCGTGTTGTGTGTGCAGGC
TGGAGAGCTGCCTCTTGGAAGGGCTATTTTGTATACCTGTACTCTGCTGA
AGAACAGAATCTCAGATTCGTCTCTCAATCAAACAACAGTGATCTGTGGA
GCACAGGTCACCTTTACCACAGAATATTCACAGAACATCAGGTTGAAAAA
TGTCACAGGTGACCTGTGCCACAGAACATCTGTTAGGAAAAATGTTAATA
GGTCACCTGTGCGCCACAGAACATCAGATGTTCTGTGGCATAGGTGACCT
GTGCCGCAGAACGCTGATAAAAAATATCACAGGTCACCTGCGCCACAGAA
CATCAGCTGGAAAGATGTAATAGGTCACCTGCGCACCACAGAACATCAGA
TCTTCTGAAACTGTTCTAGGTCTAGGTAACCTGAACACATTCTGATCTGT
CCTTTGTGTGAAACATTCGCACTTTCAACCGTACCAACAACCTGTTATCC
CCAATACCCCGCGGGGAGATGCAAGCGAACAAAGTGTTTACCCGTGTCAC
CCGCGACCTCTTCGTTGTTGTCCCGCGTGTCACGCGCGCAGGTCACGGCG
GGTCAAAGAACGGGTCAACCGGGCCTGACCCGCGCATGGCCCGTCGATTT
GCGGGTCACTCAGAATCCGGGTCTTTGCGTGTCAAGTGACACGCAATCCG
AAAATCTGACGGGTCGTTGCGTTTCAGTGACACGCAATCTGAAAGTCTGA
CGGGTCGCATGCTTCAGTGACCCGCAATGTACGGGTCGTTGCGTGTCAGC
GACACGCAACCTCAAAATCTGACGGGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig147:170562..178440+

>mRNA_P-littoralis_Contig147.27.1 ID=mRNA_P-littoralis_Contig147.27.1|Name=mRNA_P-littoralis_Contig147.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig147:170562..178440+ (Pylaiella littoralis U1_48)
CGAGGATCACCCCATAGCTATGACCACCTTGCTGCTGCTGTACGACCAGC
GCCACCACGACTACCGTTGTGGTTGAGCCCCTCACGGATCGTGAGAGAAA
GCCAGAGAAAACGATACACGCGCGTAGACCCCCCCCGGATCGAAGAGGTC
ACGGCGGGTCAAAGAACGGGTCAACCGGGCCTGACCCGCGCATGGCCCGT
CGATTTGCGGGTCACTCAGAATCCGGGTCTTTGCGTGTCAAGTGACACGC
AATCCGAAAATCTGACGGGTCGTTGCGTTTCAGTGACACGCAATCTGAAA
GTCTGA
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