mRNA_P-littoralis_Contig1468.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1468.7.1
Unique NamemRNA_P-littoralis_Contig1468.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1468.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1468contigP-littoralis_Contig1468:6640..7297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size199
Hectar predicted targeting categoryother localisation
Exons3
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789690.915553-CDS-P-littoralis_Contig1468:6641..66621680789690.915553-CDS-P-littoralis_Contig1468:6641..6662Pylaiella littoralis U1_48CDSP-littoralis_Contig1468 6642..6662 -
1680789690.9279296-CDS-P-littoralis_Contig1468:6928..69981680789690.9279296-CDS-P-littoralis_Contig1468:6928..6998Pylaiella littoralis U1_48CDSP-littoralis_Contig1468 6929..6998 -
1680789690.9364052-CDS-P-littoralis_Contig1468:7193..72971680789690.9364052-CDS-P-littoralis_Contig1468:7193..7297Pylaiella littoralis U1_48CDSP-littoralis_Contig1468 7194..7297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1468.7.1prot_P-littoralis_Contig1468.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1468 6642..7297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1468.7.1

>prot_P-littoralis_Contig1468.7.1 ID=prot_P-littoralis_Contig1468.7.1|Name=mRNA_P-littoralis_Contig1468.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
VEQGVAWTRILCAMWSPDRRRGPDHRQSSRETCSWEWIHPQRIATTARME
VILQRQSKVTRMNWT
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mRNA from alignment at P-littoralis_Contig1468:6640..7297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1468.7.1 ID=mRNA_P-littoralis_Contig1468.7.1|Name=mRNA_P-littoralis_Contig1468.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=658bp|location=Sequence derived from alignment at P-littoralis_Contig1468:6640..7297- (Pylaiella littoralis U1_48)
GTTGAACAGGGTGTGGCATGGACCCGAATACTCTGCGCGATGTGGTCTCC
GGATCGAAGGAGGGGTCCGGACCATCGCCAGTCAAGCCGAGAGACGTGTT
CATGGTGAGCTTATGTATACCCTCCTATCGCTGCCTTCCTCATCTCTGGT
GTCAAGAGGTTGACAGGAAAAGCCAATTTTTATTTTTAATCCAAGCGCTT
TCTCCTTCTGGGTGAGAGAAAAGTACTCCTGCATTCAGACCATGTAATCT
ACTAACTCCCCTTCTTTGTTGTCGTTTTCTCTCTCTATTCCTCCCGTAGG
GAGTGGATTCACCCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTGAT
TCTCCAACGCCAATCCAAGGTACCTTTGGCTATTTTGCAAAACACACTAC
GGGTTCTGACCCTTGAACGTCTGCAGTGGTTGCCGTTGTTTGTCACATGC
TAAAACAAAAATATGACTCCCTGTCCCTGCTCGGTACCTTGTTCCATCGC
GGACGTCGTCCATGGCCACAGATTTGTTCAAAGATTCGTGATAATATTGA
AGAACCCATAATCCGGAGTAGGATTCACCATTACAGAAAATCAGGCCTTG
GAGCTCATGCGTTCAACTGTTCGATCTGATTCAAGGTCACCCGGATGAAT
TGGACGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1468:6640..7297-

>mRNA_P-littoralis_Contig1468.7.1 ID=mRNA_P-littoralis_Contig1468.7.1|Name=mRNA_P-littoralis_Contig1468.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig1468:6640..7297- (Pylaiella littoralis U1_48)
GTTGAACAGGGTGTGGCATGGACCCGAATACTCTGCGCGATGTGGTCTCC
GGATCGAAGGAGGGGTCCGGACCATCGCCAGTCAAGCCGAGAGACGTGTT
CATGGGAGTGGATTCACCCGCAGAGGATAGCGACGACCGCGCGCATGGAG
GTGATTCTCCAACGCCAATCCAAGGTCACCCGGATGAATTGGACG
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