mRNA_P-littoralis_Contig1468.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1468.2.1
Unique NamemRNA_P-littoralis_Contig1468.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1468.2.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 9.040e-60
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 1
Query:  139 ILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPVPAATGPATVVNPYAPSK 516
            ILEHRF  +RAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSG+DF  SDYR++IMLAV++AE AENVRARSRNS  AVLCPRYI+VEPL+A PVVEAPVPAA G +T+VNPYA SK
Sbjct:  239 ILEHRFKDVRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPVPAAQGSSTIVNPYASSK 364          
BLAST of mRNA_P-littoralis_Contig1468.2.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 6.990e-53
Identity = 101/120 (84.17%), Postives = 109/120 (90.83%), Query Frame = 1
Query:  157 AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPVPAATGPATVVNPYAPSK 516
            AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYR +IMLAV++A  AENVR+RSRNS  AVLCPRYI+VEPL+A PVVE  VPAA G +T+VNPYA SK
Sbjct:  917 AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVETSVPAAQGSSTIVNPYASSK 1036          
BLAST of mRNA_P-littoralis_Contig1468.2.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 2.150e-37
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 1
Query:   34 TPDRTASAGNQRRHTTPSLSTQAWEESRGAPRQRDILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITV 426
            TP + + A  ++ H TPS S +++E  RGA RQRD +EHRF H R GLG+ RNPTA QAKER+ RGDLNRGL GGSRAN NR +R G+DF  S  R +I+L V++ E +  +RA SRN + AV+ PRY++V
Sbjct:   33 TPGKDSGAPRKQAHPTPSWSHRSFESGRGASRQRDPVEHRFGHTRQGLGSHRNPTATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSV 163          
BLAST of mRNA_P-littoralis_Contig1468.2.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 9.960e-28
Identity = 62/107 (57.94%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  136 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVE 456
            D++EH F H+R GLG+ RNPTAAQAKER  RGD+ RGLHG  RAN+NRNAR G DF  S YRA++ML V E E +  +RAR+++S  AVL P YI+V    A PV +
Sbjct:  660 DVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVAD 766          
BLAST of mRNA_P-littoralis_Contig1468.2.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.970e-24
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1
Query:  163 IRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEA-----PVPAATGPATVV-NPYAP 510
            +R GLG+ RNPTA QAKER+ RGDLNRGL GGSRAN NR +R G DF  S  R +I+L V++ E +  +RA SRN + AV+  RY++V    A P VE        PA+ G   VV N YAP
Sbjct:    1 MRQGLGSHRNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSYAP 122          
BLAST of mRNA_P-littoralis_Contig1468.2.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.230e-23
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 1
Query:  136 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVV 453
            DI EHR+ H+  GLG+  NPT A+AKER+ RGDL R LHG SRA  N+NAR G+DF  S  R +I+L V++AE +  +RA S+N + AV+ PRYI+++   A PVV
Sbjct:  530 DIEEHRYGHMHQGLGSHSNPTCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVV 635          
BLAST of mRNA_P-littoralis_Contig1468.2.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.480e-22
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1
Query:  163 IRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVE 429
            +R  LG+  NP AAQAKER+ RGDL R LHG SRAN N+NAR G+DF  S  R +IML V++AE +  +RA SRN   AV+ PRYI+++
Sbjct:    1 MRQSLGSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISID 89          
BLAST of mRNA_P-littoralis_Contig1468.2.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.850e-19
Identity = 55/101 (54.46%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  136 DILEHRFAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRN--ARSGDDFNVSDYRAK--IMLAVSEAETAENVRARSRNSSVAVLCPRYITV 426
            DI EHRF+HIRA LGT RNPTA +AK+RS  GDL R  +G  R N +RN  ARSG DF       K  I+LAV++ ET + VRA  RN+   VLCPRY+ +
Sbjct:  180 DICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRAWCRNTPAEVLCPRYMDI 280          
BLAST of mRNA_P-littoralis_Contig1468.2.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 8.650e-17
Identity = 66/178 (37.08%), Postives = 92/178 (51.69%), Query Frame = 1
Query:   34 TPDRTASAGNQRRHTTPSLSTQAW-------EESRGAPRQRDILEHRFAHIRAGL---GTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPV-----PAATGPATVV-NPYAPSKV 519
            TP + + A  +R H TPS S +++         SRG P            +RA        + P   +++      DLNRGLHGGSRAN NR +R G+DF  S  R +I+L V++ E +  +RA SRN + AV+ PRY++V    A P VE        PA+ G   VV NPYAP ++
Sbjct:   25 TPGKDSGAPRKRAHPTPSWSHRSFASSXSFESRSRGTP------------VRAHAPRPSVAQKPDGYESEGTGSTRDLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPYAPREI 190          
BLAST of mRNA_P-littoralis_Contig1468.2.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.720e-11
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 GAGLPMQGSTRTPDRTASAGNQRRHTTPSLSTQAWEESRGAPRQRDILEHRF 156
            GAGLPMQ ST TPDR   AGNQRRHTTPS STQAWEESRGA RQR+ L   F
Sbjct:   37 GAGLPMQRSTHTPDRPTIAGNQRRHTTPSPSTQAWEESRGARRQRENLADIF 88          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1468.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K6I9_9PHAE9.040e-6083.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI6.990e-5384.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2C2_9PHAE2.150e-3754.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE9.960e-2857.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K630_9PHAE4.970e-2451.64Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE2.230e-2352.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE4.480e-2256.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE1.850e-1954.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZP5_9PHAE8.650e-1737.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE1.720e-1176.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1468contigP-littoralis_Contig1468:3527..4795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size759
Hectar predicted targeting categoryother localisation
Exons3
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789690.8269312-UTR-P-littoralis_Contig1468:3526..35411680789690.8269312-UTR-P-littoralis_Contig1468:3526..3541Pylaiella littoralis U1_48UTRP-littoralis_Contig1468 3527..3541 +
1680789690.8664339-UTR-P-littoralis_Contig1468:4593..46831680789690.8664339-UTR-P-littoralis_Contig1468:4593..4683Pylaiella littoralis U1_48UTRP-littoralis_Contig1468 4594..4683 +
1680789690.8767447-UTR-P-littoralis_Contig1468:4714..47951680789690.8767447-UTR-P-littoralis_Contig1468:4714..4795Pylaiella littoralis U1_48UTRP-littoralis_Contig1468 4715..4795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789690.8439245-CDS-P-littoralis_Contig1468:3541..36611680789690.8439245-CDS-P-littoralis_Contig1468:3541..3661Pylaiella littoralis U1_48CDSP-littoralis_Contig1468 3542..3661 +
1680789690.8569577-CDS-P-littoralis_Contig1468:4140..45931680789690.8569577-CDS-P-littoralis_Contig1468:4140..4593Pylaiella littoralis U1_48CDSP-littoralis_Contig1468 4141..4593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1468.2.1prot_P-littoralis_Contig1468.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1468 3542..4593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1468.2.1

>prot_P-littoralis_Contig1468.2.1 ID=prot_P-littoralis_Contig1468.2.1|Name=mRNA_P-littoralis_Contig1468.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=191bp
MQGSTRTPDRTASAGNQRRHTTPSLSTQAWEESRGAPRQRDILEHRFAHI
RAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSD
YRAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPV
PAATGPATVVNPYAPSKVEVCMPPKQRLLEGLCGSIHNRR*
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mRNA from alignment at P-littoralis_Contig1468:3527..4795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1468.2.1 ID=mRNA_P-littoralis_Contig1468.2.1|Name=mRNA_P-littoralis_Contig1468.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1269bp|location=Sequence derived from alignment at P-littoralis_Contig1468:3527..4795+ (Pylaiella littoralis U1_48)
GGGGCAGGACTACCGATGCAGGGATCTACCCGCACGCCAGACAGGACCGC AAGCGCGGGGAATCAACGACGGCACACAACGCCATCGCTGAGCACGCAGG CTTGGGAGGAAAGCAGGGGGGCTCCGCGCCAACGTGTGAGTGGAATTTCT CGTGTCACCGAGACAATGTTGCGTCTATACGCCCTTTGGGTCAGCTGTTC TTGCTGTTGTTTGACTTGGCGCGGAACGGTAAACCCAGACACCGACGATG AGCTCCGGCCCTCCTAACCCCCCCCCCCCCCCCCCCACACACACACACTT TGCGGACCACATGTTGCACAAGGTGGAGGACTCCGACAGCGCCGCAACCC CTGCGTCCATCGCCTTCGAACACTTCGGGTTTTTGGGATGGACCTGGAGG GATAAGCATATGGGCTCGAAGCTGCCTCTTTGTCTTGAATATATATGTTT TTTTTTGTAATATTGTGCCTCCGCGTGACACAGCCTGGGACGTTTGCTAG CGGAAGGCGCCCAATCGTCCCTTCTTGGACACGATATGTAGTATCTAATC TATGCCGTATTGTTGCCGCCTGCACACTAAACCCACCGCCATCCCCCCAC CCATACCGCCACAGGACATTCTCGAACACCGGTTTGCCCACATCCGTGCG GGGTTGGGGACATTGAGGAACCCCACGGCGGCACAGGCGAAGGAGAGGTC CGTACGCGGCGACCTCAACCGAGGTCTACATGGAGGTTCACGGGCGAACT TCAACCGCAACGCGCGGTCCGGCGATGACTTCAACGTCTCCGATTACAGG GCCAAAATCATGTTGGCAGTATCAGAGGCGGAGACCGCCGAGAATGTTCG CGCGCGATCCAGGAATTCATCTGTCGCTGTTTTGTGTCCGCGTTACATTA CCGTCGAACCCCTTTCGGCGCCCCCGGTAGTAGAGGCCCCCGTCCCGGCC GCCACGGGCCCGGCGACAGTTGTGAACCCATACGCGCCGTCCAAAGTAGA AGTATGTATGCCGCCCAAGCAGAGGCTCTTGGAGGGTCTATGTGGAAGTA TTCATAATCGGAGGTGAGGACGTCCCCACGTACCCCCACGTACTTCCGAG ATGATAGTGACAAGTTCACGGCGTGGGGTTTGTAAGGACACACACGCATA TGCCAAAGTTGCACATTGAGTATCACGAAAGGTTGTAGGGAGGAGCATGG TGGGGGAAAGCAAGGACCCCTATGCGAATGTGTCGTTTTTGTATTGATTA GCGATGGACATATGGATTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1468:3527..4795+

>mRNA_P-littoralis_Contig1468.2.1 ID=mRNA_P-littoralis_Contig1468.2.1|Name=mRNA_P-littoralis_Contig1468.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig1468:3527..4795+ (Pylaiella littoralis U1_48)
ATGCAGGGATCTACCCGCACGCCAGACAGGACCGCAAGCGCGGGGAATCA
ACGACGGCACACAACGCCATCGCTGAGCACGCAGGCTTGGGAGGAAAGCA
GGGGGGCTCCGCGCCAACGTGACATTCTCGAACACCGGTTTGCCCACATC
CGTGCGGGGTTGGGGACATTGAGGAACCCCACGGCGGCACAGGCGAAGGA
GAGGTCCGTACGCGGCGACCTCAACCGAGGTCTACATGGAGGTTCACGGG
CGAACTTCAACCGCAACGCGCGGTCCGGCGATGACTTCAACGTCTCCGAT
TACAGGGCCAAAATCATGTTGGCAGTATCAGAGGCGGAGACCGCCGAGAA
TGTTCGCGCGCGATCCAGGAATTCATCTGTCGCTGTTTTGTGTCCGCGTT
ACATTACCGTCGAACCCCTTTCGGCGCCCCCGGTAGTAGAGGCCCCCGTC
CCGGCCGCCACGGGCCCGGCGACAGTTGTGAACCCATACGCGCCGTCCAA
AGTAGAAGTATGTATGCCGCCCAAGCAGAGGCTCTTGGAGGGTCTATGTG
GAAGTATTCATAATCGGAGGTGA
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