mRNA_P-littoralis_Contig1464.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1464.2.1
Unique NamemRNA_P-littoralis_Contig1464.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1464.2.1 vs. uniprot
Match: A0A6H5JHD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD0_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 5.320e-8
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   28 EYTAAGSNSEKNNELASARRMGARTESRVCSACVFARVGREFLAERKHARKGKTIC 195
            EY A GSN++ N++LA+  RMG      VCS+C+ A VGR+FL + +HARKG  IC
Sbjct:  182 EYNAGGSNTDNNDKLAADVRMGGTKTGGVCSSCLEAGVGRQFLVDAQHARKGAKIC 237
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1464.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHD0_9PHAE5.320e-851.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1464contigP-littoralis_Contig1464:1458..1658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size202
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_000190.1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789690.6072612-CDS-P-littoralis_Contig1464:1457..16581680789690.6072612-CDS-P-littoralis_Contig1464:1457..1658Pylaiella littoralis U1_48CDSP-littoralis_Contig1464 1458..1658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1464.2.1prot_P-littoralis_Contig1464.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1464 1458..1658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1464.2.1

>prot_P-littoralis_Contig1464.2.1 ID=prot_P-littoralis_Contig1464.2.1|Name=mRNA_P-littoralis_Contig1464.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
GRATSEETTEYTAAGSNSEKNNELASARRMGARTESRVCSACVFARVGRE
FLAERKHARKGKTICPE
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mRNA from alignment at P-littoralis_Contig1464:1458..1658-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1464.2.1 ID=mRNA_P-littoralis_Contig1464.2.1|Name=mRNA_P-littoralis_Contig1464.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig1464:1458..1658- (Pylaiella littoralis U1_48)
GGGAGGGCTACGAGTGAGGAAACCACGGAATACACGGCTGCAGGGAGCAA
CTCGGAGAAGAACAACGAGCTCGCATCTGCACGTCGAATGGGAGCCCGAA
CCGAGAGCAGGGTGTGTTCGGCTTGCGTCTTCGCTCGTGTGGGCCGTGAA
TTCCTTGCGGAGAGGAAACACGCGCGGAAGGGGAAGACGATTTGTCCCGA
A
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Coding sequence (CDS) from alignment at P-littoralis_Contig1464:1458..1658-

>mRNA_P-littoralis_Contig1464.2.1 ID=mRNA_P-littoralis_Contig1464.2.1|Name=mRNA_P-littoralis_Contig1464.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig1464:1458..1658- (Pylaiella littoralis U1_48)
GGGAGGGCTACGAGTGAGGAAACCACGGAATACACGGCTGCAGGGAGCAA
CTCGGAGAAGAACAACGAGCTCGCATCTGCACGTCGAATGGGAGCCCGAA
CCGAGAGCAGGGTGTGTTCGGCTTGCGTCTTCGCTCGTGTGGGCCGTGAA
TTCCTTGCGGAGAGGAAACACGCGCGGAAGGGGAAGACGATTTGTCCCGA
A
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