mRNA_P-littoralis_Contig1462.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1462.2.1
Unique NamemRNA_P-littoralis_Contig1462.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1462.2.1 vs. uniprot
Match: A0A6H5KHU9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU9_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 3.980e-5
Identity = 36/99 (36.36%), Postives = 46/99 (46.46%), Query Frame = 1 
Query:   28 PEQEPLTRRAIRELAPGRATEGMADPRRMGRTRSSTGHQAPSPLPQLAEAPPESDDDDDLSGQMGLVSMMDKECLLAMLSTHAAVDSRR------GVGE 306
            P   PL+  A+R+L PG+ TEGM  PR  GRTRS T H                          GL+SM+DK  L++ML    AV+  R      G+GE
Sbjct:  524 PALPPLSAHAMRQLRPGKKTEGMKYPRLPGRTRSGTKHST------------------------GLISMLDKNTLVSMLEAQRAVEEERREPGGAGIGE 598
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1462.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHU9_9PHAE3.980e-536.36Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1462contigP-littoralis_Contig1462:781..1107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789690.4653945-CDS-P-littoralis_Contig1462:780..11071680789690.4653945-CDS-P-littoralis_Contig1462:780..1107Pylaiella littoralis U1_48CDSP-littoralis_Contig1462 781..1107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1462.2.1prot_P-littoralis_Contig1462.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1462 781..1107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1462.2.1

>prot_P-littoralis_Contig1462.2.1 ID=prot_P-littoralis_Contig1462.2.1|Name=mRNA_P-littoralis_Contig1462.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
SAAPAAAANPEQEPLTRRAIRELAPGRATEGMADPRRMGRTRSSTGHQAP
SPLPQLAEAPPESDDDDDLSGQMGLVSMMDKECLLAMLSTHAAVDSRRGV
GEFGGNKES
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mRNA from alignment at P-littoralis_Contig1462:781..1107-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1462.2.1 ID=mRNA_P-littoralis_Contig1462.2.1|Name=mRNA_P-littoralis_Contig1462.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig1462:781..1107- (Pylaiella littoralis U1_48)
TCTGCCGCTCCTGCTGCTGCTGCCAATCCGGAGCAGGAACCTTTGACTCG
GAGGGCGATACGAGAACTCGCACCCGGGAGGGCAACGGAGGGCATGGCCG
ACCCTCGGCGGATGGGCAGGACGAGATCTTCAACGGGACACCAGGCTCCC
TCTCCTCTGCCGCAGCTGGCGGAAGCACCGCCGGAAAGTGATGACGACGA
TGACCTTTCAGGGCAGATGGGCCTTGTCTCCATGATGGACAAAGAGTGCC
TGCTCGCGATGCTCTCCACGCACGCGGCGGTCGACAGCCGCAGGGGTGTT
GGGGAGTTTGGGGGGAACAAAGAGTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1462:781..1107-

>mRNA_P-littoralis_Contig1462.2.1 ID=mRNA_P-littoralis_Contig1462.2.1|Name=mRNA_P-littoralis_Contig1462.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig1462:781..1107- (Pylaiella littoralis U1_48)
TCTGCCGCTCCTGCTGCTGCTGCCAATCCGGAGCAGGAACCTTTGACTCG
GAGGGCGATACGAGAACTCGCACCCGGGAGGGCAACGGAGGGCATGGCCG
ACCCTCGGCGGATGGGCAGGACGAGATCTTCAACGGGACACCAGGCTCCC
TCTCCTCTGCCGCAGCTGGCGGAAGCACCGCCGGAAAGTGATGACGACGA
TGACCTTTCAGGGCAGATGGGCCTTGTCTCCATGATGGACAAAGAGTGCC
TGCTCGCGATGCTCTCCACGCACGCGGCGGTCGACAGCCGCAGGGGTGTT
GGGGAGTTTGGGGGGAACAAAGAGTCT
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