mRNA_P-littoralis_Contig1461.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1461.1.1
Unique NamemRNA_P-littoralis_Contig1461.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1461.1.1 vs. uniprot
Match: O78799_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78799_PYLLI)

HSP 1 Score: 220 bits (561), Expect = 2.360e-66
Identity = 109/117 (93.16%), Postives = 115/117 (98.29%), Query Frame = 1 
Query:    1 VLKVVAVEFMTENSANDEPIRFMINFDHILSESELKKYQEFDYSDQDEVSPLLDADDLKELQVYPELRQLFETQIIGPKNGKGNVHANNSVKYIKMIFLDVNNEKCRVDSILPPEKL 351
            VLKVVA+EFMTEN AND+PIRF INFDHILSESELKKYQEFDYSDQDEVSPLLDADDLKE++VYPELRQLFE+QIIGPKNGKGNVHANNSVKYIKMIFLDVNN+KCRVDSILPPEKL
Sbjct:  117 VLKVVAIEFMTENDANDDPIRFTINFDHILSESELKKYQEFDYSDQDEVSPLLDADDLKEIKVYPELRQLFESQIIGPKNGKGNVHANNSVKYIKMIFLDVNNKKCRVDSILPPEKL 233
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BLAST of mRNA_P-littoralis_Contig1461.1.1 vs. uniprot
Match: O78800_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78800_PYLLI)

HSP 1 Score: 214 bits (544), Expect = 2.140e-65
Identity = 111/118 (94.07%), Postives = 114/118 (96.61%), Query Frame = 2 
Query:  356 MNLETKSSPLQLVVNILYYSLISALSCLVVYVIFSGLNELMNSYYANRLSILEMEYKVKSFSTDVLSSVQNTFQNTIKP--TPEKQGWIAWLKPVWVSLATLSVRYLVSLCCHMLPGA 703
            MNLETKSSPLQLVVNILYYS ISALSCLVVYVIFSGLNELMNSYYANRLSILEMEYKVKSFSTDVLSSVQNT Q+T+KP  TPEKQGWIAWLKPVWVSLATLSVRY+VSLCCHMLPGA
Sbjct:    1 MNLETKSSPLQLVVNILYYSFISALSCLVVYVIFSGLNELMNSYYANRLSILEMEYKVKSFSTDVLSSVQNTLQSTLKPSPTPEKQGWIAWLKPVWVSLATLSVRYIVSLCCHMLPGA 118
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BLAST of mRNA_P-littoralis_Contig1461.1.1 vs. uniprot
Match: O78801_PYLLI (Uncharacterized protein n=2 Tax=Pylaiella littoralis TaxID=2885 RepID=O78801_PYLLI)

HSP 1 Score: 169 bits (429), Expect = 1.030e-47
Identity = 91/135 (67.41%), Postives = 103/135 (76.30%), Query Frame = 2 
Query:  701 ALFNMTLLGPCLKLIIHGPEGFFVEPLTPGEIQERFQFLSEAGQSLNNNCVERNQNITAAMNLIGVAMDDMRARIGALESGGSVDAIN-----LNRARTHEESMNEISRMLDGISGSDGGVFRDEENDTTGIFGD 1090
            +LFNMTLLGPCLKLIIHGPEGFFVEPLTPGEIQERFQFLSEAGQSLNNNCVERNQN T +   I  A++ MR +I  LESG S++ IN     L +ART EE  N++S +L GIS S G V  D  ND+TGIF D
Sbjct:   23 SLFNMTLLGPCLKLIIHGPEGFFVEPLTPGEIQERFQFLSEAGQSLNNNCVERNQNTTESFAAIATALELMRDKIRILESGRSINTINNGLGDLPQARTQEELDNQVSDLLSGISRSTGEVVPDAINDSTGIFDD 157
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BLAST of mRNA_P-littoralis_Contig1461.1.1 vs. uniprot
Match: O78802_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78802_PYLLI)

HSP 1 Score: 102 bits (253), Expect = 8.670e-23
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:  163 ADDLKELQVYPELRQLFETQIIGPKNGKGNVHANNSVKYIKMIFLDVNNEKCRVDSILP 339
             ++LK  +  PELRQLFE+QIIGPKNGKGNVHANNSVKYIKMIFLDVNN+KCRVDSILP
Sbjct:   45 VENLKNSKSTPELRQLFESQIIGPKNGKGNVHANNSVKYIKMIFLDVNNKKCRVDSILP 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1461.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
O78799_PYLLI2.360e-6693.16Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
O78800_PYLLI2.140e-6594.07Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
O78801_PYLLI1.030e-4767.41Uncharacterized protein n=2 Tax=Pylaiella littoral... [more]
O78802_PYLLI8.670e-2383.05Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1461contigP-littoralis_Contig1461:371..1634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1264
Hectar predicted targeting categorysignal anchor
Exons1
Cds size738
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789690.1609228-UTR-P-littoralis_Contig1461:370..7251680789690.1609228-UTR-P-littoralis_Contig1461:370..725Pylaiella littoralis U1_48UTRP-littoralis_Contig1461 371..725 +
1680789690.1829836-UTR-P-littoralis_Contig1461:1463..16341680789690.1829836-UTR-P-littoralis_Contig1461:1463..1634Pylaiella littoralis U1_48UTRP-littoralis_Contig1461 1464..1634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789690.1727974-CDS-P-littoralis_Contig1461:725..14631680789690.1727974-CDS-P-littoralis_Contig1461:725..1463Pylaiella littoralis U1_48CDSP-littoralis_Contig1461 726..1463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1461.1.1prot_P-littoralis_Contig1461.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1461 726..1463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1461.1.1

>prot_P-littoralis_Contig1461.1.1 ID=prot_P-littoralis_Contig1461.1.1|Name=mRNA_P-littoralis_Contig1461.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
MNLETKSSPLQLVVNILYYSLISALSCLVVYVIFSGLNELMNSYYANRLS
ILEMEYKVKSFSTDVLSSVQNTFQNTIKPTPEKQGWIAWLKPVWVSLATL
SVRYLVSLCCHMLPGALFNMTLLGPCLKLIIHGPEGFFVEPLTPGEIQER
FQFLSEAGQSLNNNCVERNQNITAAMNLIGVAMDDMRARIGALESGGSVD
AINLNRARTHEESMNEISRMLDGISGSDGGVFRDEENDTTGIFGD*
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mRNA from alignment at P-littoralis_Contig1461:371..1634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1461.1.1 ID=mRNA_P-littoralis_Contig1461.1.1|Name=mRNA_P-littoralis_Contig1461.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1264bp|location=Sequence derived from alignment at P-littoralis_Contig1461:371..1634+ (Pylaiella littoralis U1_48)
GTTTTAAAAGTAGTAGCTGTTGAGTTTATGACGGAAAATTCGGCCAATGA
TGAACCGATTCGATTCATGATTAATTTCGATCATATTTTATCGGAATCGG
AGTTAAAAAAATACCAAGAATTTGATTATTCGGACCAAGATGAAGTATCG
CCCTTACTTGATGCCGATGATTTAAAAGAACTCCAAGTCTACCCGGAGTT
ACGTCAATTATTCGAGACTCAAATAATCGGTCCAAAGAATGGCAAAGGAA
ATGTTCATGCCAACAACAGCGTTAAATATATAAAAATGATATTTCTTGAC
GTGAATAATGAAAAATGCAGAGTAGATTCGATTCTTCCCCCAGAAAAGCT
ATAAAATGAATTTAGAAACAAAATCATCCCCTTTACAACTAGTTGTTAAT
ATTTTGTATTATTCTCTTATTTCGGCTCTTAGTTGCTTGGTTGTTTATGT
GATATTTTCTGGTTTGAATGAGTTGATGAATTCGTATTATGCAAATCGTT
TAAGTATTCTTGAGATGGAATATAAGGTTAAATCCTTTTCGACAGATGTT
TTAAGCAGTGTTCAAAACACTTTTCAGAACACCATTAAGCCCACTCCCGA
GAAACAGGGGTGGATTGCCTGGCTAAAGCCTGTATGGGTCTCACTTGCTA
CTTTAAGCGTAAGATATCTTGTGAGTCTTTGTTGCCATATGTTGCCTGGA
GCCCTTTTTAACATGACTCTTCTGGGACCCTGTTTAAAGCTTATTATACA
TGGACCGGAAGGCTTTTTCGTAGAACCTTTGACCCCTGGTGAGATTCAAG
AGAGATTTCAATTTTTAAGCGAAGCAGGCCAATCCCTAAATAACAATTGT
GTTGAGAGAAATCAAAATATTACGGCTGCCATGAACCTTATTGGTGTTGC
AATGGATGATATGAGAGCAAGAATTGGTGCTTTAGAGTCGGGTGGTTCAG
TAGATGCAATAAATCTAAACAGGGCAAGAACTCATGAAGAAAGCATGAAT
GAAATAAGTAGAATGCTCGACGGTATTTCAGGGAGTGACGGTGGGGTGTT
CAGAGATGAAGAAAATGACACCACCGGAATTTTCGGTGATTAAATAAAAT
GGAAGATTTCTTAGAACTTCTTAACACCATATCTGAGACCCCTACCTCGG
GTAGTGGTCATACTATTATACAACAAAATCTGTTGGATCAGCCTAATGAT
TTCAATACTGAACACAATCTTTTGTCAAATCAGGCTGATAATACTGACTT
AAAGGTCTATGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1461:371..1634+

>mRNA_P-littoralis_Contig1461.1.1 ID=mRNA_P-littoralis_Contig1461.1.1|Name=mRNA_P-littoralis_Contig1461.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=738bp|location=Sequence derived from alignment at P-littoralis_Contig1461:371..1634+ (Pylaiella littoralis U1_48)
ATGAATTTAGAAACAAAATCATCCCCTTTACAACTAGTTGTTAATATTTT
GTATTATTCTCTTATTTCGGCTCTTAGTTGCTTGGTTGTTTATGTGATAT
TTTCTGGTTTGAATGAGTTGATGAATTCGTATTATGCAAATCGTTTAAGT
ATTCTTGAGATGGAATATAAGGTTAAATCCTTTTCGACAGATGTTTTAAG
CAGTGTTCAAAACACTTTTCAGAACACCATTAAGCCCACTCCCGAGAAAC
AGGGGTGGATTGCCTGGCTAAAGCCTGTATGGGTCTCACTTGCTACTTTA
AGCGTAAGATATCTTGTGAGTCTTTGTTGCCATATGTTGCCTGGAGCCCT
TTTTAACATGACTCTTCTGGGACCCTGTTTAAAGCTTATTATACATGGAC
CGGAAGGCTTTTTCGTAGAACCTTTGACCCCTGGTGAGATTCAAGAGAGA
TTTCAATTTTTAAGCGAAGCAGGCCAATCCCTAAATAACAATTGTGTTGA
GAGAAATCAAAATATTACGGCTGCCATGAACCTTATTGGTGTTGCAATGG
ATGATATGAGAGCAAGAATTGGTGCTTTAGAGTCGGGTGGTTCAGTAGAT
GCAATAAATCTAAACAGGGCAAGAACTCATGAAGAAAGCATGAATGAAAT
AAGTAGAATGCTCGACGGTATTTCAGGGAGTGACGGTGGGGTGTTCAGAG
ATGAAGAAAATGACACCACCGGAATTTTCGGTGATTAA
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